Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00073 * 2 1 4 4 C 1.50700 * 109.47550 * 179.97438 * 3 2 1 5 5 C 1.33820 * 122.44719 * 90.01881 * 4 3 2 6 6 S 1.70616 * 110.95561 * 179.97438 * 5 4 3 7 7 C 1.75832 * 91.56189 * 0.02562 * 6 5 4 8 8 C 1.46583 * 125.46026 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00467 * 187.15009 * 8 7 6 10 10 N 1.34781 * 119.99465 * 7.15047 * 8 7 6 11 11 C 1.46497 * 120.00245 * 6.06607 * 10 8 7 12 12 C 1.46507 * 119.99722 * 186.06904 * 10 8 7 13 13 H 1.08999 * 110.88451 * 0.69905 * 12 10 8 14 14 C 1.54907 * 111.00362 * 124.58096 * 12 10 8 15 15 N 1.47423 * 104.82984 * 155.08619 * 14 12 10 16 16 C 1.36934 * 125.64990 * 155.83689 * 15 14 12 17 17 H 1.08003 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00238 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00313 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00197 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47002 * 59.99967 * 20 18 16 22 22 H 1.48501 * 109.47260 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46924 * 299.99999 * 20 18 16 24 24 C 1.47022 * 108.70297 * 335.86952 * 15 14 12 25 25 C 1.54371 * 107.29006 * 1.09479 * 24 15 14 26 26 H 1.08999 * 110.70130 * 263.79726 * 25 24 15 27 27 O 1.42897 * 110.75638 * 140.50721 * 25 24 15 28 28 C 1.36644 * 109.08450 * 0.24297 * 7 6 5 29 29 H 1.08999 * 109.46692 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47106 * 300.00199 * 1 2 3 31 31 H 1.09000 * 109.47299 * 60.00306 * 1 2 3 32 32 H 1.08997 * 109.47539 * 59.99632 * 3 2 1 33 33 H 1.09007 * 109.46801 * 299.99813 * 3 2 1 34 34 H 1.08003 * 124.52166 * 359.96319 * 5 4 3 35 35 H 1.08993 * 109.47380 * 275.93959 * 11 10 8 36 36 H 1.09000 * 109.46779 * 155.94191 * 11 10 8 37 37 H 1.08999 * 109.47173 * 35.94654 * 11 10 8 38 38 H 1.08999 * 110.36436 * 273.92082 * 14 12 10 39 39 H 1.08991 * 110.36776 * 36.24679 * 14 12 10 40 40 H 0.97000 * 120.00384 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.88236 * 120.48214 * 24 15 14 42 42 H 1.09001 * 109.88343 * 241.64248 * 24 15 14 43 43 H 0.96701 * 114.00140 * 66.48165 * 27 25 24 44 44 H 1.08001 * 123.35504 * 179.75904 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2287 1.1301 -1.1283 6 16 5.8954 0.9988 -0.7877 7 6 5.5923 1.0220 0.9441 8 6 6.6181 0.9404 1.9881 9 8 6.2912 0.8341 3.1555 10 7 7.9234 0.9830 1.6550 11 6 8.3174 1.2439 0.2683 12 6 8.9482 0.7684 2.6797 13 1 8.4923 0.5760 3.6509 14 6 9.9037 -0.3825 2.2769 15 7 11.1575 -0.1026 3.0001 16 6 12.1069 -1.0291 3.3396 17 1 11.9673 -2.0670 3.0755 18 6 13.2487 -0.6344 4.0231 19 7 13.4191 0.6305 4.3446 20 14 14.5435 -1.8985 4.4869 21 1 15.0672 -2.5448 3.2568 22 1 15.6559 -1.2268 5.2057 23 1 13.9365 -2.9288 5.3674 24 6 11.2193 1.3360 3.2972 25 6 9.9232 1.9731 2.7520 26 1 10.0888 2.3953 1.7608 27 8 9.4311 2.9686 3.6513 28 6 4.2470 1.1223 1.1610 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8079 1.1630 -2.1225 35 1 8.2961 0.3122 -0.2969 36 1 9.3256 1.6577 0.2488 37 1 7.6237 1.9560 -0.1787 38 1 9.4927 -1.3430 2.5879 39 1 10.0762 -0.3732 1.2008 40 1 14.2169 0.9062 4.8226 41 1 11.2825 1.4896 4.3744 42 1 12.0857 1.7790 2.8061 43 1 10.0044 3.7432 3.7326 44 1 3.8048 1.1518 2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047446914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -47.064124 kcal Electronic energy + Delta-G solvation = -27328.211193 eV Core-core repulsion = 23374.294762 eV Total energy + Delta-G solvation = -3953.916430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.04074 -38.99765 -37.87281 -36.96017 -35.24605 -34.81873 -32.04444 -30.72038 -28.73387 -27.99810 -27.44632 -26.85485 -26.04054 -24.87783 -23.68773 -20.85349 -20.42952 -19.44316 -19.14267 -18.12779 -17.10130 -16.90632 -16.73750 -16.42629 -16.03030 -15.63912 -15.32477 -15.30886 -14.78398 -14.20531 -14.03661 -13.63286 -13.31326 -13.22350 -13.13967 -12.98170 -12.69097 -12.57856 -12.33507 -12.31885 -12.12109 -12.00666 -11.67624 -11.44928 -11.23402 -10.89225 -10.80015 -10.75730 -10.19808 -10.04216 -9.97645 -9.86813 -9.82430 -9.29449 -9.02390 -8.74275 -8.65860 -8.35888 -6.94218 -5.77744 -3.13258 0.40086 1.33948 1.74853 2.07579 2.99676 3.23092 3.38781 3.43143 3.44193 3.74906 4.41793 4.47042 4.66288 4.67734 4.79223 4.90743 4.95289 5.02136 5.05359 5.08129 5.16564 5.31263 5.32862 5.36975 5.44376 5.50291 5.58486 5.69602 5.70597 5.84904 5.99356 6.08574 6.10357 6.16837 6.45540 6.55554 6.79271 6.83136 7.33019 7.44354 7.48520 7.71782 8.14812 8.19287 8.24901 9.12547 9.72658 10.35443 11.33529 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.002374 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.820887 B =11792.107334 C =11933.586576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.122 3.878 4 C -0.123 4.123 5 C -0.241 4.241 6 S 0.238 5.762 7 C -0.261 4.261 8 C 0.589 3.411 9 O -0.523 6.523 10 N -0.596 5.596 11 C 0.059 3.941 12 C 0.135 3.865 13 H 0.117 0.883 14 C 0.132 3.868 15 N -0.599 5.599 16 C -0.231 4.231 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.153 3.847 25 C 0.064 3.936 26 H 0.056 0.944 27 O -0.559 6.559 28 C -0.042 4.042 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.164 0.836 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.026 0.974 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.374 0.626 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.251 5.170 -14.435 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.044 3.956 4 C -0.136 4.136 5 C -0.378 4.378 6 S 0.508 5.492 7 C -0.381 4.381 8 C 0.376 3.624 9 O -0.401 6.401 10 N -0.328 5.328 11 C -0.086 4.086 12 C 0.032 3.968 13 H 0.135 0.865 14 C 0.005 3.995 15 N -0.326 5.326 16 C -0.359 4.359 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.746 3.254 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.028 3.972 25 C 0.004 3.996 26 H 0.074 0.926 27 O -0.363 6.363 28 C -0.075 4.075 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.182 0.818 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.220 0.780 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.274 4.411 -14.558 24.554 hybrid contribution -0.404 0.157 0.807 0.916 sum -19.678 4.568 -13.752 24.437 Atomic orbital electron populations 1.22760 0.80976 1.02916 0.99966 1.87992 1.19563 1.27506 1.95388 1.21015 0.88665 0.85019 1.00904 1.18360 0.95588 1.07644 0.92050 1.25726 1.02039 1.07017 1.03028 1.83595 1.00923 1.66396 0.98288 1.24621 0.98044 1.18352 0.97117 1.16927 0.81368 0.76859 0.87219 1.90836 1.80960 1.49807 1.18491 1.47548 1.05370 1.70486 1.09391 1.21979 1.02687 1.01659 0.82266 1.22466 0.87077 0.95010 0.92289 0.86470 1.21779 0.86830 0.95345 0.95587 1.44229 1.18214 1.04130 1.66061 1.19021 0.96725 0.89137 1.31027 0.90157 1.24827 0.98460 0.96580 1.00408 1.69919 1.28344 1.14071 1.44625 0.86141 0.80915 0.80147 0.78196 1.21082 1.21554 1.21025 1.21853 0.91245 0.83862 1.00284 1.23578 0.95699 0.88507 0.91835 0.92612 1.86516 1.50935 1.32030 1.66856 1.20551 0.91045 0.96112 0.99777 0.89518 0.93919 0.94115 0.92149 0.92426 0.81795 0.91393 0.88633 0.90826 0.93215 0.95599 0.93546 0.92100 0.93333 0.77988 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.01 10.69 -35.23 -0.38 -4.39 16 3 C 0.12 1.08 6.18 36.01 0.22 1.31 16 4 C -0.12 -1.32 5.41 -106.45 -0.58 -1.90 16 5 C -0.24 -2.24 10.67 29.18 0.31 -1.93 16 6 S 0.24 2.30 17.90 -107.50 -1.92 0.38 16 7 C -0.26 -3.57 6.20 -36.79 -0.23 -3.80 16 8 C 0.59 10.16 7.63 -12.89 -0.10 10.06 16 9 O -0.52 -11.02 16.25 5.19 0.08 -10.93 16 10 N -0.60 -9.66 2.91 -173.06 -0.50 -10.16 16 11 C 0.06 0.70 7.50 59.85 0.45 1.15 16 12 C 0.14 2.63 3.17 -65.78 -0.21 2.42 16 13 H 0.12 2.65 7.03 -51.93 -0.36 2.29 16 14 C 0.13 2.73 6.81 -2.53 -0.02 2.71 16 15 N -0.60 -15.10 3.39 -170.05 -0.58 -15.68 16 16 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 17 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -26.61 10.31 55.49 0.57 -26.04 16 20 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.15 3.64 5.15 -3.04 -0.02 3.62 16 25 C 0.06 1.23 3.87 -24.87 -0.10 1.13 16 26 H 0.06 0.94 6.26 -51.93 -0.33 0.62 16 27 O -0.56 -10.48 13.39 -35.23 -0.47 -10.95 16 28 C -0.04 -0.54 9.80 -40.44 -0.40 -0.94 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.06 0.40 8.12 -51.92 -0.42 -0.03 16 34 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 36 H 0.10 1.11 6.27 -51.93 -0.33 0.79 16 37 H 0.07 0.74 5.14 -27.78 -0.14 0.60 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.50 7.14 -51.93 -0.37 0.13 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 42 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 43 H 0.37 5.34 9.12 45.56 0.42 5.76 16 44 H 0.15 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -34.80 369.19 -7.65 -42.44 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.20 Total: 4.51 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 0.21 Total: 8.38 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.51 Total: -51.88 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.76 Total: -26.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.92 Total: 0.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.80 -7.65 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047446914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.620 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds