Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00073 * 2 1 4 4 C 1.50700 * 109.47550 * 179.97438 * 3 2 1 5 5 C 1.33820 * 122.44719 * 90.01881 * 4 3 2 6 6 S 1.70616 * 110.95561 * 179.97438 * 5 4 3 7 7 C 1.75832 * 91.56189 * 0.02562 * 6 5 4 8 8 C 1.46583 * 125.46026 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00467 * 187.15009 * 8 7 6 10 10 N 1.34781 * 119.99465 * 7.15047 * 8 7 6 11 11 C 1.46497 * 120.00245 * 6.06607 * 10 8 7 12 12 C 1.46507 * 119.99722 * 186.06904 * 10 8 7 13 13 H 1.08999 * 110.88451 * 0.69905 * 12 10 8 14 14 C 1.54907 * 111.00362 * 124.58096 * 12 10 8 15 15 N 1.47423 * 104.82984 * 155.08619 * 14 12 10 16 16 C 1.36934 * 125.64990 * 155.83689 * 15 14 12 17 17 H 1.08003 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00238 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00313 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00197 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47002 * 59.99967 * 20 18 16 22 22 H 1.48501 * 109.47260 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46924 * 299.99999 * 20 18 16 24 24 C 1.47022 * 108.70297 * 335.86952 * 15 14 12 25 25 C 1.54371 * 107.29006 * 1.09479 * 24 15 14 26 26 H 1.08999 * 110.70130 * 263.79726 * 25 24 15 27 27 O 1.42897 * 110.75638 * 140.50721 * 25 24 15 28 28 C 1.36644 * 109.08450 * 0.24297 * 7 6 5 29 29 H 1.08999 * 109.46692 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47106 * 300.00199 * 1 2 3 31 31 H 1.09000 * 109.47299 * 60.00306 * 1 2 3 32 32 H 1.08997 * 109.47539 * 59.99632 * 3 2 1 33 33 H 1.09007 * 109.46801 * 299.99813 * 3 2 1 34 34 H 1.08003 * 124.52166 * 359.96319 * 5 4 3 35 35 H 1.08993 * 109.47380 * 275.93959 * 11 10 8 36 36 H 1.09000 * 109.46779 * 155.94191 * 11 10 8 37 37 H 1.08999 * 109.47173 * 35.94654 * 11 10 8 38 38 H 1.08999 * 110.36436 * 273.92082 * 14 12 10 39 39 H 1.08991 * 110.36776 * 36.24679 * 14 12 10 40 40 H 0.97000 * 120.00384 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.88236 * 120.48214 * 24 15 14 42 42 H 1.09001 * 109.88343 * 241.64248 * 24 15 14 43 43 H 0.96701 * 114.00140 * 66.48165 * 27 25 24 44 44 H 1.08001 * 123.35504 * 179.75904 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2287 1.1301 -1.1283 6 16 5.8954 0.9988 -0.7877 7 6 5.5923 1.0220 0.9441 8 6 6.6181 0.9404 1.9881 9 8 6.2912 0.8341 3.1555 10 7 7.9234 0.9830 1.6550 11 6 8.3174 1.2439 0.2683 12 6 8.9482 0.7684 2.6797 13 1 8.4923 0.5760 3.6509 14 6 9.9037 -0.3825 2.2769 15 7 11.1575 -0.1026 3.0001 16 6 12.1069 -1.0291 3.3396 17 1 11.9673 -2.0670 3.0755 18 6 13.2487 -0.6344 4.0231 19 7 13.4191 0.6305 4.3446 20 14 14.5435 -1.8985 4.4869 21 1 15.0672 -2.5448 3.2568 22 1 15.6559 -1.2268 5.2057 23 1 13.9365 -2.9288 5.3674 24 6 11.2193 1.3360 3.2972 25 6 9.9232 1.9731 2.7520 26 1 10.0888 2.3953 1.7608 27 8 9.4311 2.9686 3.6513 28 6 4.2470 1.1223 1.1610 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8079 1.1630 -2.1225 35 1 8.2961 0.3122 -0.2969 36 1 9.3256 1.6577 0.2488 37 1 7.6237 1.9560 -0.1787 38 1 9.4927 -1.3430 2.5879 39 1 10.0762 -0.3732 1.2008 40 1 14.2169 0.9062 4.8226 41 1 11.2825 1.4896 4.3744 42 1 12.0857 1.7790 2.8061 43 1 10.0044 3.7432 3.7326 44 1 3.8048 1.1518 2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047446914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -74.092782 kcal Electronic energy + Delta-G solvation = -27329.383243 eV Core-core repulsion = 23374.294762 eV Total energy + Delta-G solvation = -3955.088481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37595 -39.92357 -39.25568 -37.78891 -36.75361 -36.43674 -33.92452 -31.79912 -30.31957 -29.18541 -28.58737 -28.08903 -26.75085 -26.47730 -24.99436 -22.33814 -22.05221 -20.73438 -20.10322 -19.23650 -19.02404 -18.30859 -17.55094 -17.34438 -17.26255 -16.75367 -16.54385 -16.34266 -16.17316 -15.74359 -15.53478 -14.78267 -14.52763 -14.50824 -14.37013 -14.15302 -13.97521 -13.94562 -13.71717 -13.35722 -13.17242 -13.04113 -13.02848 -12.89524 -12.70458 -12.67119 -12.25314 -12.11649 -11.88576 -11.64984 -11.53380 -11.23494 -10.91988 -10.76529 -10.63270 -10.05359 -9.70636 -9.37598 -8.96817 -7.87972 -5.26019 -0.51692 0.47232 0.93757 1.17756 1.46537 1.50337 1.56050 1.72844 2.03849 2.48177 3.09805 3.14155 3.32907 3.45526 3.57693 3.81418 3.93702 3.99007 4.00836 4.07809 4.16164 4.27565 4.40346 4.42209 4.43100 4.45543 4.52749 4.57600 4.61948 4.72205 4.78175 4.83007 4.88628 4.99071 5.22711 5.32374 5.36514 5.40650 5.44008 5.65594 6.12388 6.21300 6.22943 6.84713 6.95836 7.03826 7.68676 8.31215 9.21519 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.002374 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.820887 B =11792.107334 C =11933.586576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.121 3.879 4 C -0.142 4.142 5 C -0.224 4.224 6 S 0.306 5.694 7 C -0.304 4.304 8 C 0.584 3.416 9 O -0.579 6.579 10 N -0.594 5.594 11 C 0.048 3.952 12 C 0.146 3.854 13 H 0.077 0.923 14 C 0.135 3.865 15 N -0.620 5.620 16 C -0.246 4.246 17 H 0.086 0.914 18 C -0.063 4.063 19 N -0.950 5.950 20 Si 0.982 3.018 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.281 1.281 24 C 0.165 3.835 25 C 0.083 3.917 26 H 0.092 0.908 27 O -0.572 6.572 28 C -0.044 4.044 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.198 0.802 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.249 0.751 41 H 0.017 0.983 42 H 0.029 0.971 43 H 0.393 0.607 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.335 5.200 -18.061 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.043 3.957 4 C -0.154 4.154 5 C -0.362 4.362 6 S 0.576 5.424 7 C -0.424 4.424 8 C 0.374 3.626 9 O -0.461 6.461 10 N -0.324 5.324 11 C -0.095 4.095 12 C 0.041 3.959 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.348 5.348 16 C -0.374 4.374 17 H 0.104 0.896 18 C -0.257 4.257 19 N -0.598 5.598 20 Si 0.810 3.190 21 H -0.197 1.197 22 H -0.220 1.220 23 H -0.207 1.207 24 C 0.039 3.961 25 C 0.022 3.978 26 H 0.110 0.890 27 O -0.379 6.379 28 C -0.079 4.079 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.215 0.785 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.047 0.953 43 H 0.242 0.758 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.373 4.450 -18.244 27.707 hybrid contribution -0.175 0.151 1.862 1.877 sum -20.548 4.601 -16.382 26.679 Atomic orbital electron populations 1.22931 0.79329 1.03730 1.01116 1.87935 1.21492 1.28501 1.95640 1.21110 0.87499 0.84789 1.02292 1.18477 0.96765 1.08602 0.91557 1.26177 1.01925 1.04022 1.04060 1.83168 1.00722 1.64716 0.93789 1.24363 0.97256 1.21576 0.99226 1.17464 0.82069 0.75695 0.87402 1.90793 1.81839 1.52395 1.21066 1.47519 1.04426 1.70118 1.10387 1.22342 1.03735 1.03520 0.79864 1.21966 0.87396 0.94759 0.91801 0.90492 1.21882 0.85269 0.95450 0.96526 1.44493 1.19310 1.04464 1.66557 1.19420 0.97305 0.89979 1.30740 0.89590 1.25684 1.00651 0.98485 1.00843 1.70132 1.28555 1.15737 1.45365 0.85108 0.78077 0.77774 0.78081 1.19714 1.22009 1.20708 1.21594 0.93100 0.83842 0.97583 1.23374 0.92917 0.88456 0.93023 0.89041 1.86489 1.51565 1.32783 1.67075 1.20651 0.91262 0.95717 1.00235 0.88979 0.93354 0.92350 0.91913 0.89892 0.78498 0.89247 0.87817 0.88607 0.93960 0.92532 0.94190 0.96512 0.95335 0.75752 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.96 10.69 -148.98 -1.59 -9.55 16 3 C 0.12 1.89 6.18 71.24 0.44 2.33 16 4 C -0.14 -2.73 5.41 -21.05 -0.11 -2.84 16 5 C -0.22 -3.27 10.67 66.82 0.71 -2.56 16 6 S 0.31 4.79 17.90 -56.49 -1.01 3.78 16 7 C -0.30 -8.06 6.20 24.08 0.15 -7.91 16 8 C 0.58 20.41 7.63 86.42 0.66 21.07 16 9 O -0.58 -25.84 16.25 -4.33 -0.07 -25.91 16 10 N -0.59 -18.78 2.91 -819.65 -2.38 -21.17 16 11 C 0.05 1.00 7.50 127.77 0.96 1.95 16 12 C 0.15 5.76 3.17 46.38 0.15 5.90 16 13 H 0.08 3.69 7.03 -2.39 -0.02 3.67 16 14 C 0.14 5.57 6.81 86.85 0.59 6.16 16 15 N -0.62 -31.86 3.39 -691.92 -2.35 -34.21 16 16 C -0.25 -13.71 10.28 84.03 0.86 -12.85 16 17 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 18 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 19 N -0.95 -56.44 10.31 21.65 0.22 -56.22 16 20 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 C 0.16 8.07 5.15 86.75 0.45 8.52 16 25 C 0.08 3.16 3.87 31.80 0.12 3.29 16 26 H 0.09 2.88 6.26 -2.39 -0.01 2.86 16 27 O -0.57 -21.61 13.39 -148.98 -1.99 -23.61 16 28 C -0.04 -1.13 9.80 21.72 0.21 -0.92 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 33 H 0.08 0.85 8.12 -2.38 -0.02 0.83 16 34 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.09 1.50 7.48 -2.39 -0.02 1.48 16 36 H 0.10 2.02 6.27 -2.39 -0.01 2.00 16 37 H 0.10 1.55 5.14 -17.75 -0.09 1.46 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 2.03 7.14 -2.39 -0.02 2.01 16 40 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.02 0.95 7.30 -2.39 -0.02 0.94 16 42 H 0.03 1.49 7.50 -2.39 -0.02 1.47 16 43 H 0.39 11.16 9.12 -74.06 -0.68 10.48 16 44 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -80.00 369.19 0.03 -79.96 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.28 Total: 18.82 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 6.90 Total: 20.56 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -4.51 Total: -111.59 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -3.66 Total: -59.06 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.01 Total: 3.78 kcal Total: -80.00 0.03 -79.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047446914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.872 kcal (2) G-P(sol) polarization free energy of solvation -79.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds