Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00055 * 2 1 4 4 C 1.50704 * 109.46784 * 179.97438 * 3 2 1 5 5 S 1.70449 * 124.59330 * 270.12582 * 4 3 2 6 6 C 1.75504 * 92.44303 * 180.21080 * 5 4 3 7 7 C 1.32764 * 110.57656 * 359.81968 * 6 5 4 8 8 C 1.36004 * 124.58718 * 90.00274 * 4 3 2 9 9 C 1.47190 * 123.46480 * 0.02562 * 8 4 3 10 10 O 1.21635 * 119.99800 * 359.72840 * 9 8 4 11 11 N 1.34774 * 119.99977 * 179.73014 * 9 8 4 12 12 C 1.46502 * 120.00034 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47405 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.68211 * 300.68632 * 13 12 11 15 15 C 1.53293 * 109.68428 * 180.16595 * 13 12 11 16 16 O 1.42963 * 109.22601 * 187.94040 * 15 13 12 17 17 C 1.42959 * 114.16385 * 62.57893 * 16 15 13 18 18 C 1.53289 * 109.22551 * 297.41942 * 17 16 15 19 19 N 1.47155 * 109.70844 * 61.22210 * 13 12 11 20 20 C 1.36933 * 120.98374 * 350.25509 * 19 13 12 21 21 H 1.08001 * 119.99976 * 31.04165 * 20 19 13 22 22 C 1.38809 * 119.99893 * 211.04139 * 20 19 13 23 23 N 1.31621 * 120.00083 * 10.87020 * 22 20 19 24 24 Si 1.86803 * 120.00187 * 190.86866 * 22 20 19 25 25 H 1.48498 * 109.46825 * 60.00026 * 24 22 20 26 26 H 1.48499 * 109.47468 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47134 * 300.00281 * 24 22 20 28 28 H 1.08998 * 109.46647 * 300.00427 * 1 2 3 29 29 H 1.08998 * 109.46704 * 59.99880 * 1 2 3 30 30 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46995 * 60.00317 * 3 2 1 32 32 H 1.09000 * 109.47356 * 299.99765 * 3 2 1 33 33 H 1.08008 * 124.70856 * 179.78541 * 6 5 4 34 34 H 1.07999 * 123.46069 * 179.97438 * 7 6 5 35 35 H 0.97004 * 120.00497 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.46724 * 59.99977 * 12 11 9 37 37 H 1.09003 * 109.47280 * 300.00290 * 12 11 9 38 38 H 1.09007 * 109.51027 * 307.86683 * 15 13 12 39 39 H 1.08997 * 109.51398 * 67.96385 * 15 13 12 40 40 H 1.08999 * 109.51374 * 57.34809 * 17 16 15 41 41 H 1.09008 * 109.51140 * 177.49361 * 17 16 15 42 42 H 1.09001 * 109.68571 * 172.02808 * 18 17 16 43 43 H 1.08996 * 109.68497 * 292.58167 * 18 17 16 44 44 H 0.97005 * 119.99603 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 16 4.4765 1.1070 1.4042 6 6 5.9588 0.9979 0.4709 7 6 5.6939 1.0196 -0.8299 8 6 4.2827 1.1252 -1.1187 9 6 3.7349 1.1690 -2.4842 10 8 2.5340 1.2597 -2.6550 11 7 4.5639 1.1087 -3.5451 12 6 4.0186 1.1517 -4.9042 13 6 5.1632 1.0683 -5.9159 14 1 5.8488 1.9020 -5.7641 15 6 4.5982 1.1171 -7.3400 16 8 5.6491 0.8535 -8.2727 17 6 6.2322 -0.4455 -8.1456 18 6 6.8810 -0.5744 -6.7628 19 7 5.8841 -0.2033 -5.7459 20 6 5.6348 -1.0170 -4.6731 21 1 4.6488 -1.0438 -4.2333 22 6 6.6495 -1.8074 -4.1510 23 7 7.8934 -1.6229 -4.5395 24 14 6.2495 -3.1328 -2.8970 25 1 5.3046 -4.1104 -3.4943 26 1 7.4984 -3.8306 -2.4987 27 1 5.6276 -2.5108 -1.7005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 6.9491 0.9240 0.8958 34 1 6.4554 0.9643 -1.5937 35 1 5.5216 1.0367 -3.4089 36 1 3.4745 2.0852 -5.0478 37 1 3.3415 0.3102 -5.0508 38 1 3.8179 0.3637 -7.4481 39 1 4.1794 2.1050 -7.5319 40 1 5.4579 -1.2046 -8.2567 41 1 6.9899 -0.5816 -8.9174 42 1 7.2030 -1.6034 -6.6027 43 1 7.7395 0.0939 -6.6962 44 1 8.6025 -2.1750 -4.1743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050980697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -57.578772 kcal Electronic energy + Delta-G solvation = -28661.761255 eV Core-core repulsion = 24707.388875 eV Total energy + Delta-G solvation = -3954.372380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.66857 -38.50894 -37.63231 -36.47428 -35.30184 -33.60160 -31.59531 -30.97158 -30.44813 -27.56774 -27.09520 -26.15438 -24.86068 -23.45788 -23.03419 -21.67294 -21.09158 -19.71398 -18.93005 -17.46929 -16.95462 -16.39077 -16.11443 -15.84626 -15.69832 -15.33274 -15.06753 -14.63978 -14.44927 -14.34250 -14.07989 -13.81733 -13.74053 -13.17419 -12.92341 -12.87607 -12.69364 -12.49799 -12.11582 -11.80394 -11.66837 -11.55095 -11.30413 -11.02186 -10.92063 -10.85364 -10.75240 -10.42373 -10.25464 -10.04576 -9.79904 -9.65939 -9.20981 -8.95629 -8.81373 -8.66187 -8.41629 -8.12623 -6.73966 -5.91091 -3.40793 0.87160 1.61963 2.01842 2.26031 3.33553 3.37366 3.43777 3.72357 3.86023 4.11212 4.36342 4.52855 4.83200 5.04586 5.09823 5.15422 5.26884 5.35616 5.44297 5.49659 5.58906 5.66406 5.71027 5.71516 5.78665 5.83823 5.99046 6.04615 6.15014 6.17934 6.18565 6.26595 6.32736 6.43875 6.51561 6.74834 7.06440 7.09475 7.21144 7.47889 7.71336 7.85795 8.20881 8.28815 8.80855 9.05724 9.65774 10.24463 11.15101 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011991 B = 0.004282 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.521867 B = 6537.060325 C = 7501.401625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.128 3.872 4 C -0.161 4.161 5 S 0.170 5.830 6 C -0.229 4.229 7 C -0.099 4.099 8 C -0.131 4.131 9 C 0.572 3.428 10 O -0.555 6.555 11 N -0.686 5.686 12 C 0.137 3.863 13 C 0.125 3.875 14 H 0.041 0.959 15 C 0.056 3.944 16 O -0.392 6.392 17 C 0.035 3.965 18 C 0.144 3.856 19 N -0.591 5.591 20 C -0.256 4.256 21 H 0.073 0.927 22 C 0.013 3.987 23 N -0.900 5.900 24 Si 0.891 3.109 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.157 0.843 35 H 0.415 0.585 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.029 0.971 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 6.936 7.449 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C 0.050 3.950 4 C -0.281 4.281 5 S 0.437 5.563 6 C -0.364 4.364 7 C -0.128 4.128 8 C -0.149 4.149 9 C 0.357 3.643 10 O -0.437 6.437 11 N -0.337 5.337 12 C 0.012 3.988 13 C 0.018 3.982 14 H 0.059 0.941 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.043 4.043 18 C 0.019 3.981 19 N -0.317 5.317 20 C -0.385 4.385 21 H 0.091 0.909 22 C -0.187 4.187 23 N -0.544 5.544 24 Si 0.720 3.280 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.201 1.201 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.186 0.814 34 H 0.174 0.826 35 H 0.253 0.747 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.047 0.953 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.258 6.885 8.782 13.312 hybrid contribution 0.589 -1.042 -0.624 1.350 sum -6.669 5.843 8.158 12.049 Atomic orbital electron populations 1.22695 0.80996 1.02615 0.99820 1.87956 1.19540 1.26771 1.95409 1.20938 0.86074 0.86027 1.01965 1.24033 0.99723 1.07136 0.97187 1.82760 0.95732 1.70116 1.07735 1.25417 1.02043 1.11721 0.97234 1.21417 0.94933 0.99786 0.96656 1.20334 0.92833 1.07629 0.94124 1.17469 0.86043 0.77009 0.83775 1.90659 1.14724 1.52108 1.86191 1.45867 1.11443 1.71423 1.04930 1.21177 0.95915 1.00765 0.80903 1.21431 0.93090 0.91033 0.92690 0.94119 1.22857 0.89483 1.00124 0.89818 1.87799 1.52325 1.34759 1.56226 1.23357 0.96900 0.83791 1.00291 1.21414 0.90332 1.02105 0.84271 1.44087 1.45377 1.17320 1.24878 1.19191 0.94518 1.18029 1.06752 0.90924 1.25090 0.94893 1.00458 0.98233 1.69976 0.98660 1.40288 1.45481 0.86525 0.77128 0.82309 0.82000 1.20955 1.21569 1.20145 0.94536 0.93612 0.89754 0.93204 0.88506 0.81367 0.82572 0.74679 0.92225 0.91347 0.93498 0.89920 0.94120 0.90254 0.88942 0.95276 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.29 10.69 -35.23 -0.38 -6.66 16 3 C 0.13 1.95 5.65 36.01 0.20 2.15 16 4 C -0.16 -2.60 5.97 -35.11 -0.21 -2.81 16 5 S 0.17 2.22 22.97 -107.50 -2.47 -0.25 16 6 C -0.23 -3.13 11.12 28.86 0.32 -2.81 16 7 C -0.10 -1.60 9.91 -39.02 -0.39 -1.98 16 8 C -0.13 -2.33 5.98 -104.63 -0.63 -2.96 16 9 C 0.57 11.20 7.79 -12.63 -0.10 11.10 16 10 O -0.56 -11.70 14.06 5.25 0.07 -11.63 16 11 N -0.69 -13.16 3.78 -61.46 -0.23 -13.39 16 12 C 0.14 2.53 4.44 -4.04 -0.02 2.51 16 13 C 0.12 2.41 3.20 -67.42 -0.22 2.20 16 14 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 15 C 0.06 0.99 6.29 37.31 0.23 1.22 16 16 O -0.39 -7.58 10.74 -35.23 -0.38 -7.96 16 17 C 0.03 0.66 6.98 37.31 0.26 0.92 16 18 C 0.14 3.24 5.38 -3.53 -0.02 3.22 16 19 N -0.59 -13.47 3.03 -164.31 -0.50 -13.96 16 20 C -0.26 -6.31 7.11 -15.06 -0.11 -6.42 16 21 H 0.07 1.86 5.81 -52.49 -0.30 1.56 16 22 C 0.01 0.33 5.06 -17.43 -0.09 0.24 16 23 N -0.90 -23.92 11.13 55.49 0.62 -23.30 16 24 Si 0.89 21.18 29.57 -169.99 -5.03 16.16 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.59 5.94 -51.93 -0.31 1.28 16 33 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.16 2.53 7.10 -52.49 -0.37 2.16 16 35 H 0.41 8.21 5.91 -40.82 -0.24 7.97 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.38 7.54 -51.93 -0.39 0.99 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 42 H 0.09 2.29 6.32 -51.93 -0.33 1.97 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -29.90 367.71 -8.54 -38.44 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.15 Total: 8.90 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.36 Total: 8.13 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.11 Total: -50.66 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.68 Total: -26.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.47 Total: -0.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.90 -8.54 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050980697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.141 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds