Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00055 * 2 1 4 4 C 1.50704 * 109.46784 * 179.97438 * 3 2 1 5 5 S 1.70449 * 124.59330 * 270.12582 * 4 3 2 6 6 C 1.75504 * 92.44303 * 180.21080 * 5 4 3 7 7 C 1.32764 * 110.57656 * 359.81968 * 6 5 4 8 8 C 1.36004 * 124.58718 * 90.00274 * 4 3 2 9 9 C 1.47190 * 123.46480 * 0.02562 * 8 4 3 10 10 O 1.21635 * 119.99800 * 359.72840 * 9 8 4 11 11 N 1.34774 * 119.99977 * 179.73014 * 9 8 4 12 12 C 1.46502 * 120.00034 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47405 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.68211 * 300.68632 * 13 12 11 15 15 C 1.53293 * 109.68428 * 180.16595 * 13 12 11 16 16 O 1.42963 * 109.22601 * 187.94040 * 15 13 12 17 17 C 1.42959 * 114.16385 * 62.57893 * 16 15 13 18 18 C 1.53289 * 109.22551 * 297.41942 * 17 16 15 19 19 N 1.47155 * 109.70844 * 61.22210 * 13 12 11 20 20 C 1.36933 * 120.98374 * 350.25509 * 19 13 12 21 21 H 1.08001 * 119.99976 * 31.04165 * 20 19 13 22 22 C 1.38809 * 119.99893 * 211.04139 * 20 19 13 23 23 N 1.31621 * 120.00083 * 10.87020 * 22 20 19 24 24 Si 1.86803 * 120.00187 * 190.86866 * 22 20 19 25 25 H 1.48498 * 109.46825 * 60.00026 * 24 22 20 26 26 H 1.48499 * 109.47468 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47134 * 300.00281 * 24 22 20 28 28 H 1.08998 * 109.46647 * 300.00427 * 1 2 3 29 29 H 1.08998 * 109.46704 * 59.99880 * 1 2 3 30 30 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46995 * 60.00317 * 3 2 1 32 32 H 1.09000 * 109.47356 * 299.99765 * 3 2 1 33 33 H 1.08008 * 124.70856 * 179.78541 * 6 5 4 34 34 H 1.07999 * 123.46069 * 179.97438 * 7 6 5 35 35 H 0.97004 * 120.00497 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.46724 * 59.99977 * 12 11 9 37 37 H 1.09003 * 109.47280 * 300.00290 * 12 11 9 38 38 H 1.09007 * 109.51027 * 307.86683 * 15 13 12 39 39 H 1.08997 * 109.51398 * 67.96385 * 15 13 12 40 40 H 1.08999 * 109.51374 * 57.34809 * 17 16 15 41 41 H 1.09008 * 109.51140 * 177.49361 * 17 16 15 42 42 H 1.09001 * 109.68571 * 172.02808 * 18 17 16 43 43 H 1.08996 * 109.68497 * 292.58167 * 18 17 16 44 44 H 0.97005 * 119.99603 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 16 4.4765 1.1070 1.4042 6 6 5.9588 0.9979 0.4709 7 6 5.6939 1.0196 -0.8299 8 6 4.2827 1.1252 -1.1187 9 6 3.7349 1.1690 -2.4842 10 8 2.5340 1.2597 -2.6550 11 7 4.5639 1.1087 -3.5451 12 6 4.0186 1.1517 -4.9042 13 6 5.1632 1.0683 -5.9159 14 1 5.8488 1.9020 -5.7641 15 6 4.5982 1.1171 -7.3400 16 8 5.6491 0.8535 -8.2727 17 6 6.2322 -0.4455 -8.1456 18 6 6.8810 -0.5744 -6.7628 19 7 5.8841 -0.2033 -5.7459 20 6 5.6348 -1.0170 -4.6731 21 1 4.6488 -1.0438 -4.2333 22 6 6.6495 -1.8074 -4.1510 23 7 7.8934 -1.6229 -4.5395 24 14 6.2495 -3.1328 -2.8970 25 1 5.3046 -4.1104 -3.4943 26 1 7.4984 -3.8306 -2.4987 27 1 5.6276 -2.5108 -1.7005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 6.9491 0.9240 0.8958 34 1 6.4554 0.9643 -1.5937 35 1 5.5216 1.0367 -3.4089 36 1 3.4745 2.0852 -5.0478 37 1 3.3415 0.3102 -5.0508 38 1 3.8179 0.3637 -7.4481 39 1 4.1794 2.1050 -7.5319 40 1 5.4579 -1.2046 -8.2567 41 1 6.9899 -0.5816 -8.9174 42 1 7.2030 -1.6034 -6.6027 43 1 7.7395 0.0939 -6.6962 44 1 8.6025 -2.1750 -4.1743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050980697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = -77.480210 kcal Electronic energy + Delta-G solvation = -28662.624246 eV Core-core repulsion = 24707.388875 eV Total energy + Delta-G solvation = -3955.235371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11742 -40.04695 -38.85246 -37.72096 -36.91441 -35.32612 -33.29527 -32.19990 -32.09331 -29.12211 -28.53286 -27.38378 -26.16794 -25.23630 -24.33071 -23.18004 -22.45962 -21.39524 -20.35355 -18.73971 -18.52641 -17.72922 -17.46146 -17.43109 -17.18608 -16.53489 -16.42316 -16.26922 -16.11380 -15.64900 -15.47996 -15.42500 -15.23034 -14.80744 -14.48893 -14.21992 -13.98104 -13.87523 -13.43171 -13.19500 -13.11077 -12.88280 -12.76751 -12.74389 -12.50452 -12.34978 -12.16814 -12.06234 -12.00263 -11.85352 -11.31212 -11.07715 -10.70049 -10.56742 -10.41008 -10.03283 -9.85682 -9.33931 -8.61799 -7.87847 -5.37781 -0.34312 0.51264 0.87339 0.99764 1.40083 1.43080 1.49215 2.29562 2.42147 2.48135 2.97853 3.04161 3.28520 3.44308 3.69958 3.87773 3.95885 4.02361 4.20777 4.27898 4.34791 4.44624 4.48010 4.49534 4.51549 4.59250 4.63223 4.64166 4.66266 4.73486 4.79886 4.95831 5.02195 5.04036 5.12114 5.23336 5.30630 5.56517 5.64476 5.69428 6.14620 6.29587 6.37374 6.67818 7.11477 7.29546 7.76386 8.32108 9.16159 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011991 B = 0.004282 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.521867 B = 6537.060325 C = 7501.401625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.410 6.410 3 C 0.127 3.873 4 C -0.181 4.181 5 S 0.249 5.751 6 C -0.225 4.225 7 C -0.123 4.123 8 C -0.164 4.164 9 C 0.567 3.433 10 O -0.577 6.577 11 N -0.689 5.689 12 C 0.143 3.857 13 C 0.126 3.874 14 H 0.039 0.961 15 C 0.058 3.942 16 O -0.397 6.397 17 C 0.046 3.954 18 C 0.149 3.851 19 N -0.604 5.604 20 C -0.240 4.240 21 H 0.063 0.937 22 C -0.022 4.022 23 N -0.922 5.922 24 Si 0.934 3.066 25 H -0.291 1.291 26 H -0.290 1.290 27 H -0.281 1.281 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.199 0.801 34 H 0.146 0.854 35 H 0.410 0.590 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.008 0.992 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 7.703 8.633 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.330 6.330 3 C 0.050 3.950 4 C -0.301 4.301 5 S 0.516 5.484 6 C -0.360 4.360 7 C -0.152 4.152 8 C -0.182 4.182 9 C 0.354 3.646 10 O -0.461 6.461 11 N -0.339 5.339 12 C 0.019 3.981 13 C 0.020 3.980 14 H 0.056 0.944 15 C -0.020 4.020 16 O -0.315 6.315 17 C -0.032 4.032 18 C 0.024 3.976 19 N -0.330 5.330 20 C -0.370 4.370 21 H 0.080 0.920 22 C -0.220 4.220 23 N -0.568 5.568 24 Si 0.764 3.236 25 H -0.218 1.218 26 H -0.216 1.216 27 H -0.207 1.207 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.216 0.784 34 H 0.163 0.837 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.137 0.863 40 H 0.061 0.939 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.027 0.973 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.991 7.666 9.958 14.893 hybrid contribution 0.739 -1.231 -0.906 1.698 sum -7.252 6.435 9.053 13.264 Atomic orbital electron populations 1.22896 0.79062 1.03722 1.00922 1.87896 1.21818 1.27632 1.95635 1.20970 0.85674 0.85756 1.02623 1.24446 1.00791 1.06374 0.98504 1.82443 0.93552 1.67608 1.04765 1.25856 1.04099 1.09380 0.96650 1.21330 0.94105 1.02085 0.97655 1.20336 0.93928 1.10408 0.93569 1.17839 0.85803 0.76329 0.84668 1.90633 1.15482 1.53242 1.86720 1.45892 1.11162 1.71541 1.05269 1.21138 0.95305 1.01063 0.80615 1.21560 0.92890 0.89180 0.94394 0.94379 1.22975 0.88899 1.02222 0.87927 1.87804 1.52709 1.34555 1.56440 1.23222 0.97335 0.84029 0.98618 1.21247 0.90097 0.99937 0.86326 1.44272 1.45554 1.18574 1.24618 1.19145 0.93745 1.17588 1.06523 0.91970 1.25446 0.94952 1.01941 0.99615 1.70070 0.98995 1.41073 1.46612 0.85855 0.76428 0.80700 0.80582 1.21796 1.21590 1.20684 0.91718 0.94165 0.88734 0.89943 0.90438 0.78439 0.83687 0.75200 0.89934 0.93265 0.93348 0.86343 0.93942 0.87697 0.91564 0.97348 0.93973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -13.30 10.69 -148.98 -1.59 -14.89 16 3 C 0.13 3.75 5.65 71.24 0.40 4.16 16 4 C -0.18 -5.65 5.97 25.17 0.15 -5.50 16 5 S 0.25 5.80 22.97 -56.49 -1.30 4.50 16 6 C -0.22 -5.69 11.12 66.64 0.74 -4.95 16 7 C -0.12 -3.96 9.91 22.67 0.22 -3.74 16 8 C -0.16 -5.87 5.98 -19.87 -0.12 -5.98 16 9 C 0.57 22.72 7.79 86.60 0.67 23.39 16 10 O -0.58 -24.88 14.06 -4.14 -0.06 -24.94 16 11 N -0.69 -27.02 3.78 -466.60 -1.76 -28.78 16 12 C 0.14 5.29 4.44 86.38 0.38 5.67 16 13 C 0.13 4.81 3.20 44.96 0.14 4.96 16 14 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 15 C 0.06 1.93 6.29 72.08 0.45 2.38 16 16 O -0.40 -14.51 10.74 -148.98 -1.60 -16.11 16 17 C 0.05 1.70 6.98 72.08 0.50 2.20 16 18 C 0.15 6.78 5.38 86.35 0.46 7.25 16 19 N -0.60 -27.78 3.03 -673.75 -2.04 -29.82 16 20 C -0.24 -12.06 7.11 84.03 0.60 -11.46 16 21 H 0.06 3.27 5.81 -2.91 -0.02 3.25 16 22 C -0.02 -1.17 5.06 84.86 0.43 -0.74 16 23 N -0.92 -50.06 11.13 21.65 0.24 -49.82 16 24 Si 0.93 44.29 29.57 68.60 2.03 46.32 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 27 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 2.56 5.94 -2.39 -0.01 2.55 16 33 H 0.20 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.15 4.86 7.10 -2.91 -0.02 4.84 16 35 H 0.41 16.79 5.91 -92.71 -0.55 16.24 16 36 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.05 2.01 7.54 -2.39 -0.02 1.99 16 38 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 42 H 0.07 3.36 6.32 -2.39 -0.02 3.34 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.25 13.45 8.31 -92.70 -0.77 12.68 16 Total: -1.00 -65.28 367.71 0.69 -64.58 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.48 Total: 29.38 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 6.30 Total: 19.57 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -3.57 Total: -108.42 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -3.25 Total: -55.94 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.30 Total: 4.50 kcal Total: -65.28 0.69 -64.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050980697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.895 kcal (2) G-P(sol) polarization free energy of solvation -65.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds