Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99892 * 2 1 4 4 C 1.50702 * 109.46896 * 180.02562 * 3 2 1 5 5 S 1.70451 * 124.58663 * 269.99308 * 4 3 2 6 6 C 1.75505 * 92.44164 * 180.02562 * 5 4 3 7 7 C 1.32767 * 110.57748 * 359.73564 * 6 5 4 8 8 C 1.36005 * 124.59311 * 90.00006 * 4 3 2 9 9 C 1.47193 * 123.46314 * 359.96866 * 8 4 3 10 10 O 1.21633 * 119.99459 * 0.02562 * 9 8 4 11 11 N 1.34769 * 119.99930 * 180.02562 * 9 8 4 12 12 C 1.46500 * 120.00129 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47624 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.67967 * 59.97558 * 13 12 11 15 15 C 1.53303 * 109.71522 * 180.51189 * 13 12 11 16 16 O 1.42967 * 109.21905 * 172.04496 * 15 13 12 17 17 C 1.42961 * 114.16734 * 297.41670 * 16 15 13 18 18 C 1.53293 * 109.22214 * 62.58572 * 17 16 15 19 19 N 1.47151 * 109.68460 * 299.45937 * 13 12 11 20 20 C 1.36942 * 120.97753 * 9.42662 * 19 13 12 21 21 H 1.07996 * 119.99876 * 330.10215 * 20 19 13 22 22 C 1.38813 * 119.99699 * 150.09898 * 20 19 13 23 23 N 1.31620 * 120.00180 * 346.77147 * 22 20 19 24 24 Si 1.86798 * 119.99898 * 166.76706 * 22 20 19 25 25 H 1.48497 * 109.47063 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47119 * 120.00091 * 24 22 20 27 27 H 1.48493 * 109.47477 * 240.00276 * 24 22 20 28 28 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46817 * 300.00410 * 1 2 3 30 30 H 1.09002 * 109.46908 * 60.00627 * 1 2 3 31 31 H 1.08994 * 109.47313 * 59.99230 * 3 2 1 32 32 H 1.09003 * 109.46651 * 299.99678 * 3 2 1 33 33 H 1.08001 * 124.70835 * 180.02562 * 6 5 4 34 34 H 1.08005 * 123.45971 * 180.23387 * 7 6 5 35 35 H 0.97000 * 120.00370 * 359.97438 * 11 9 8 36 36 H 1.09006 * 109.46920 * 59.99565 * 12 11 9 37 37 H 1.09002 * 109.46810 * 299.99939 * 12 11 9 38 38 H 1.08995 * 109.50943 * 291.96519 * 15 13 12 39 39 H 1.08997 * 109.50881 * 52.07286 * 15 13 12 40 40 H 1.08993 * 109.51269 * 182.50767 * 17 16 15 41 41 H 1.08999 * 109.51352 * 302.66156 * 17 16 15 42 42 H 1.08992 * 109.68488 * 187.97376 * 18 17 16 43 43 H 1.09003 * 109.68212 * 67.41886 * 18 17 16 44 44 H 0.96998 * 119.99957 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 16 4.4777 1.1100 1.4022 6 6 5.9587 0.9935 0.4678 7 6 5.6924 1.0091 -0.8328 8 6 4.2819 1.1257 -1.1206 9 6 3.7329 1.1687 -2.4856 10 8 2.5323 1.2638 -2.6555 11 7 4.5606 1.1028 -3.5471 12 6 4.0144 1.1462 -4.9058 13 6 5.1577 1.0559 -5.9184 14 1 5.7007 0.1215 -5.7765 15 6 4.5930 1.1136 -7.3425 16 8 5.6733 1.2156 -8.2733 17 6 6.4569 2.4030 -8.1328 18 6 7.1170 2.4113 -6.7493 19 7 6.0728 2.1936 -5.7355 20 6 5.9526 3.0285 -4.6567 21 1 4.9844 3.1957 -4.2086 22 6 7.0754 3.6599 -4.1393 23 7 8.2777 3.2677 -4.5040 24 14 6.8798 5.0663 -2.9256 25 1 5.4359 5.3118 -2.6809 26 1 7.5450 4.7120 -1.6460 27 1 7.5031 6.2928 -3.4844 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8465 0.8898 32 1 1.6886 1.8463 -0.8901 33 1 6.9489 0.9149 0.8919 34 1 6.4527 0.9445 -1.5972 35 1 5.5182 1.0274 -3.4117 36 1 3.4743 2.0820 -5.0505 37 1 3.3333 0.3076 -5.0505 38 1 4.0224 0.2073 -7.5448 39 1 3.9430 1.9830 -7.4413 40 1 7.2271 2.4244 -8.9037 41 1 5.8143 3.2775 -8.2348 42 1 7.5995 3.3735 -6.5784 43 1 7.8573 1.6133 -6.6909 44 1 9.0622 3.7092 -4.1427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050980698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -57.541194 kcal Electronic energy + Delta-G solvation = -28584.057532 eV Core-core repulsion = 24629.686782 eV Total energy + Delta-G solvation = -3954.370750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.67552 -38.52337 -37.65651 -36.48059 -35.31765 -33.60973 -31.61114 -30.97841 -30.46631 -27.58134 -27.11783 -26.17615 -24.86839 -23.48333 -23.04097 -21.68417 -21.09326 -19.72450 -18.93781 -17.47791 -16.97059 -16.38944 -16.15190 -15.84976 -15.71595 -15.35226 -15.07675 -14.65587 -14.47635 -14.35851 -14.08256 -13.82923 -13.75004 -13.18768 -12.93126 -12.88944 -12.72054 -12.50605 -12.12843 -11.84690 -11.65378 -11.56240 -11.34116 -11.08959 -10.92154 -10.90659 -10.75685 -10.42898 -10.26369 -10.06060 -9.81894 -9.67053 -9.21799 -8.96986 -8.82016 -8.69424 -8.41858 -8.12896 -6.77467 -5.93978 -3.41878 0.87298 1.61063 2.01682 2.25856 3.25481 3.35575 3.39151 3.70638 3.89577 4.04468 4.32806 4.51769 4.83109 5.05117 5.08801 5.14191 5.24116 5.33529 5.42168 5.48691 5.58167 5.66238 5.66613 5.70698 5.79906 5.83104 5.98620 6.04949 6.13618 6.16748 6.18837 6.26069 6.31187 6.43744 6.50442 6.73839 7.04066 7.09036 7.16955 7.44992 7.68716 7.84465 8.20645 8.25771 8.81039 9.02633 9.63455 10.21989 11.12481 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.004323 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.840468 B = 6475.310212 C = 8032.275139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.127 3.873 4 C -0.160 4.160 5 S 0.170 5.830 6 C -0.229 4.229 7 C -0.100 4.100 8 C -0.132 4.132 9 C 0.572 3.428 10 O -0.555 6.555 11 N -0.686 5.686 12 C 0.137 3.863 13 C 0.125 3.875 14 H 0.042 0.958 15 C 0.056 3.944 16 O -0.392 6.392 17 C 0.035 3.965 18 C 0.144 3.856 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.075 0.925 22 C 0.011 3.989 23 N -0.898 5.898 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.288 1.288 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.157 0.843 35 H 0.415 0.585 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.029 0.971 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 -4.681 7.291 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C 0.049 3.951 4 C -0.280 4.280 5 S 0.437 5.563 6 C -0.364 4.364 7 C -0.129 4.129 8 C -0.150 4.150 9 C 0.357 3.643 10 O -0.437 6.437 11 N -0.337 5.337 12 C 0.012 3.988 13 C 0.017 3.983 14 H 0.059 0.941 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.043 4.043 18 C 0.018 3.982 19 N -0.317 5.317 20 C -0.384 4.384 21 H 0.093 0.907 22 C -0.188 4.188 23 N -0.542 5.542 24 Si 0.720 3.280 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.215 1.215 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.186 0.814 34 H 0.175 0.825 35 H 0.254 0.746 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.048 0.952 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.213 -4.830 8.623 12.851 hybrid contribution 0.790 1.284 -0.642 1.638 sum -7.424 -3.546 7.981 11.462 Atomic orbital electron populations 1.22695 0.80999 1.02512 0.99950 1.87912 1.19540 1.26913 1.95457 1.20952 0.86082 0.85878 1.02178 1.24017 0.99679 1.07114 0.97189 1.82775 0.95707 1.70111 1.07738 1.25424 1.02049 1.11653 0.97230 1.21431 0.94869 0.99892 0.96680 1.20337 0.92825 1.07699 0.94117 1.17464 0.86014 0.77052 0.83775 1.90658 1.14810 1.52028 1.86191 1.45884 1.11388 1.71502 1.04916 1.21176 0.95428 1.01241 0.80923 1.21433 0.91512 0.92615 0.92696 0.94053 1.22860 0.88843 1.00748 0.89829 1.87804 1.44287 1.43043 1.55948 1.23346 0.94283 0.86472 1.00209 1.21406 0.90073 1.02300 0.84385 1.44108 1.34965 1.28130 1.24506 1.19299 0.92950 1.19811 1.06356 0.90750 1.25063 0.95331 1.00096 0.98349 1.70008 0.96857 1.41257 1.46076 0.86386 0.77924 0.82653 0.81022 1.20147 1.21332 1.21470 0.89787 0.94501 0.93595 0.93125 0.88409 0.81363 0.82520 0.74606 0.91400 0.92157 0.89885 0.93482 0.90239 0.94108 0.89023 0.95239 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.88 10.69 -35.23 -0.38 -6.26 16 3 C 0.13 1.93 5.65 36.01 0.20 2.13 16 4 C -0.16 -2.57 5.97 -35.11 -0.21 -2.78 16 5 S 0.17 2.20 22.97 -107.50 -2.47 -0.27 16 6 C -0.23 -3.12 11.12 28.86 0.32 -2.80 16 7 C -0.10 -1.60 9.91 -39.02 -0.39 -1.99 16 8 C -0.13 -2.33 5.98 -104.63 -0.63 -2.96 16 9 C 0.57 11.19 7.79 -12.63 -0.10 11.09 16 10 O -0.56 -11.71 14.06 5.25 0.07 -11.63 16 11 N -0.69 -13.16 3.73 -61.46 -0.23 -13.39 16 12 C 0.14 2.53 4.45 -4.05 -0.02 2.51 16 13 C 0.12 2.40 3.21 -67.42 -0.22 2.19 16 14 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.06 0.98 6.29 37.31 0.23 1.22 16 16 O -0.39 -7.54 10.74 -35.23 -0.38 -7.92 16 17 C 0.03 0.66 6.98 37.31 0.26 0.92 16 18 C 0.14 3.21 5.40 -3.53 -0.02 3.19 16 19 N -0.59 -13.35 3.03 -164.30 -0.50 -13.85 16 20 C -0.25 -6.19 7.10 -15.06 -0.11 -6.30 16 21 H 0.07 1.87 5.76 -52.49 -0.30 1.56 16 22 C 0.01 0.28 5.01 -17.43 -0.09 0.20 16 23 N -0.90 -23.61 11.20 55.49 0.62 -22.98 16 24 Si 0.89 20.64 29.57 -169.99 -5.03 15.61 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.66 5.94 -51.93 -0.31 1.35 16 33 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.16 2.54 7.10 -52.48 -0.37 2.17 16 35 H 0.42 8.23 5.86 -40.82 -0.24 7.99 16 36 H 0.07 1.35 7.56 -51.93 -0.39 0.96 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 2.25 6.32 -51.93 -0.33 1.92 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -29.26 367.64 -8.53 -37.79 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.15 Total: 9.23 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.36 Total: 8.13 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.11 Total: -50.22 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.68 Total: -25.81 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.47 Total: -0.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.26 -8.53 -37.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050980698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.750 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds