Wall clock time and date at job start Sat Apr 11 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99892 * 2 1 4 4 C 1.50702 * 109.46896 * 180.02562 * 3 2 1 5 5 S 1.70451 * 124.58663 * 269.99308 * 4 3 2 6 6 C 1.75505 * 92.44164 * 180.02562 * 5 4 3 7 7 C 1.32767 * 110.57748 * 359.73564 * 6 5 4 8 8 C 1.36005 * 124.59311 * 90.00006 * 4 3 2 9 9 C 1.47193 * 123.46314 * 359.96866 * 8 4 3 10 10 O 1.21633 * 119.99459 * 0.02562 * 9 8 4 11 11 N 1.34769 * 119.99930 * 180.02562 * 9 8 4 12 12 C 1.46500 * 120.00129 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47624 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.67967 * 59.97558 * 13 12 11 15 15 C 1.53303 * 109.71522 * 180.51189 * 13 12 11 16 16 O 1.42967 * 109.21905 * 172.04496 * 15 13 12 17 17 C 1.42961 * 114.16734 * 297.41670 * 16 15 13 18 18 C 1.53293 * 109.22214 * 62.58572 * 17 16 15 19 19 N 1.47151 * 109.68460 * 299.45937 * 13 12 11 20 20 C 1.36942 * 120.97753 * 9.42662 * 19 13 12 21 21 H 1.07996 * 119.99876 * 330.10215 * 20 19 13 22 22 C 1.38813 * 119.99699 * 150.09898 * 20 19 13 23 23 N 1.31620 * 120.00180 * 346.77147 * 22 20 19 24 24 Si 1.86798 * 119.99898 * 166.76706 * 22 20 19 25 25 H 1.48497 * 109.47063 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47119 * 120.00091 * 24 22 20 27 27 H 1.48493 * 109.47477 * 240.00276 * 24 22 20 28 28 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46817 * 300.00410 * 1 2 3 30 30 H 1.09002 * 109.46908 * 60.00627 * 1 2 3 31 31 H 1.08994 * 109.47313 * 59.99230 * 3 2 1 32 32 H 1.09003 * 109.46651 * 299.99678 * 3 2 1 33 33 H 1.08001 * 124.70835 * 180.02562 * 6 5 4 34 34 H 1.08005 * 123.45971 * 180.23387 * 7 6 5 35 35 H 0.97000 * 120.00370 * 359.97438 * 11 9 8 36 36 H 1.09006 * 109.46920 * 59.99565 * 12 11 9 37 37 H 1.09002 * 109.46810 * 299.99939 * 12 11 9 38 38 H 1.08995 * 109.50943 * 291.96519 * 15 13 12 39 39 H 1.08997 * 109.50881 * 52.07286 * 15 13 12 40 40 H 1.08993 * 109.51269 * 182.50767 * 17 16 15 41 41 H 1.08999 * 109.51352 * 302.66156 * 17 16 15 42 42 H 1.08992 * 109.68488 * 187.97376 * 18 17 16 43 43 H 1.09003 * 109.68212 * 67.41886 * 18 17 16 44 44 H 0.96998 * 119.99957 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 16 4.4777 1.1100 1.4022 6 6 5.9587 0.9935 0.4678 7 6 5.6924 1.0091 -0.8328 8 6 4.2819 1.1257 -1.1206 9 6 3.7329 1.1687 -2.4856 10 8 2.5323 1.2638 -2.6555 11 7 4.5606 1.1028 -3.5471 12 6 4.0144 1.1462 -4.9058 13 6 5.1577 1.0559 -5.9184 14 1 5.7007 0.1215 -5.7765 15 6 4.5930 1.1136 -7.3425 16 8 5.6733 1.2156 -8.2733 17 6 6.4569 2.4030 -8.1328 18 6 7.1170 2.4113 -6.7493 19 7 6.0728 2.1936 -5.7355 20 6 5.9526 3.0285 -4.6567 21 1 4.9844 3.1957 -4.2086 22 6 7.0754 3.6599 -4.1393 23 7 8.2777 3.2677 -4.5040 24 14 6.8798 5.0663 -2.9256 25 1 5.4359 5.3118 -2.6809 26 1 7.5450 4.7120 -1.6460 27 1 7.5031 6.2928 -3.4844 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8465 0.8898 32 1 1.6886 1.8463 -0.8901 33 1 6.9489 0.9149 0.8919 34 1 6.4527 0.9445 -1.5972 35 1 5.5182 1.0274 -3.4117 36 1 3.4743 2.0820 -5.0505 37 1 3.3333 0.3076 -5.0505 38 1 4.0224 0.2073 -7.5448 39 1 3.9430 1.9830 -7.4413 40 1 7.2271 2.4244 -8.9037 41 1 5.8143 3.2775 -8.2348 42 1 7.5995 3.3735 -6.5784 43 1 7.8573 1.6133 -6.6909 44 1 9.0622 3.7092 -4.1427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050980698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:13 Heat of formation + Delta-G solvation = -76.778141 kcal Electronic energy + Delta-G solvation = -28584.891709 eV Core-core repulsion = 24629.686782 eV Total energy + Delta-G solvation = -3955.204927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12303 -40.05105 -38.84134 -37.71775 -36.92185 -35.31933 -33.29677 -32.20143 -32.09370 -29.12386 -28.53262 -27.37333 -26.15995 -25.24150 -24.33340 -23.18536 -22.45830 -21.39427 -20.35791 -18.73893 -18.52269 -17.69979 -17.55654 -17.34922 -17.18931 -16.53753 -16.41906 -16.26490 -16.10984 -15.64007 -15.48897 -15.41682 -15.22906 -14.81316 -14.47633 -14.23963 -13.98307 -13.86975 -13.44293 -13.20308 -13.08998 -12.91586 -12.76552 -12.73635 -12.48578 -12.34512 -12.14204 -12.05931 -12.00848 -11.84601 -11.30385 -11.07659 -10.70479 -10.56112 -10.41435 -10.03418 -9.85134 -9.34069 -8.63159 -7.87296 -5.35958 -0.33803 0.50555 0.87600 0.99836 1.38199 1.44871 1.51179 2.30288 2.42130 2.48592 2.94918 3.03686 3.28839 3.44153 3.70498 3.87617 3.95157 4.01875 4.20199 4.27815 4.34452 4.45131 4.47571 4.51460 4.53057 4.59354 4.63200 4.63751 4.65907 4.73141 4.81773 4.95618 5.01934 5.04542 5.11360 5.23405 5.29712 5.56104 5.63267 5.70592 6.13051 6.29399 6.36903 6.67994 7.11261 7.29720 7.76716 8.32506 9.17390 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.004323 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.840468 B = 6475.310212 C = 8032.275139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.128 3.872 4 C -0.180 4.180 5 S 0.251 5.749 6 C -0.224 4.224 7 C -0.123 4.123 8 C -0.164 4.164 9 C 0.567 3.433 10 O -0.578 6.578 11 N -0.689 5.689 12 C 0.143 3.857 13 C 0.126 3.874 14 H 0.037 0.963 15 C 0.058 3.942 16 O -0.397 6.397 17 C 0.046 3.954 18 C 0.149 3.851 19 N -0.604 5.604 20 C -0.240 4.240 21 H 0.066 0.934 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 0.936 3.064 25 H -0.283 1.283 26 H -0.284 1.284 27 H -0.293 1.293 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.198 0.802 34 H 0.145 0.855 35 H 0.411 0.589 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.008 0.992 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 -5.205 8.567 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C 0.050 3.950 4 C -0.300 4.300 5 S 0.518 5.482 6 C -0.359 4.359 7 C -0.151 4.151 8 C -0.182 4.182 9 C 0.353 3.647 10 O -0.461 6.461 11 N -0.339 5.339 12 C 0.019 3.981 13 C 0.020 3.980 14 H 0.054 0.946 15 C -0.020 4.020 16 O -0.315 6.315 17 C -0.032 4.032 18 C 0.024 3.976 19 N -0.330 5.330 20 C -0.370 4.370 21 H 0.084 0.916 22 C -0.222 4.222 23 N -0.568 5.568 24 Si 0.766 3.234 25 H -0.209 1.209 26 H -0.211 1.211 27 H -0.220 1.220 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.215 0.785 34 H 0.163 0.837 35 H 0.249 0.751 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.068 0.932 40 H 0.123 0.877 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.061 -5.364 9.892 14.448 hybrid contribution 0.967 1.391 -0.951 1.943 sum -8.094 -3.973 8.941 12.698 Atomic orbital electron populations 1.22910 0.79115 1.03927 1.00729 1.87867 1.21687 1.27056 1.95608 1.20917 0.85799 0.85969 1.02323 1.24419 1.00698 1.06367 0.98550 1.82456 0.93470 1.67584 1.04699 1.25853 1.04078 1.09353 0.96654 1.21327 0.94011 1.02165 0.97646 1.20322 0.93907 1.10484 0.93511 1.17844 0.85776 0.76358 0.84686 1.90634 1.15599 1.53158 1.86728 1.45910 1.11111 1.71622 1.05257 1.21131 0.95185 1.01157 0.80648 1.21550 0.91026 0.91067 0.94392 0.94561 1.22972 0.88465 1.02620 0.87951 1.87808 1.44616 1.42964 1.56151 1.23219 0.94734 0.86696 0.98549 1.21240 0.89925 1.00024 0.86434 1.44298 1.35396 1.29048 1.24295 1.19279 0.92312 1.19302 1.06141 0.91613 1.25456 0.95280 1.01726 0.99770 1.70106 0.97105 1.42249 1.47350 0.85685 0.77081 0.80771 0.79890 1.20876 1.21081 1.22012 0.88123 0.92106 0.94390 0.90314 0.90932 0.78505 0.83693 0.75132 0.92996 0.90233 0.86472 0.93200 0.87719 0.93822 0.91569 0.97422 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -12.08 10.69 -148.98 -1.59 -13.67 16 3 C 0.13 3.78 5.65 71.24 0.40 4.18 16 4 C -0.18 -5.60 5.97 25.17 0.15 -5.45 16 5 S 0.25 5.79 22.97 -56.49 -1.30 4.49 16 6 C -0.22 -5.65 11.12 66.64 0.74 -4.91 16 7 C -0.12 -3.93 9.91 22.67 0.22 -3.70 16 8 C -0.16 -5.83 5.98 -19.87 -0.12 -5.95 16 9 C 0.57 22.71 7.79 86.60 0.67 23.38 16 10 O -0.58 -24.97 14.06 -4.13 -0.06 -25.03 16 11 N -0.69 -27.07 3.73 -466.61 -1.74 -28.82 16 12 C 0.14 5.30 4.45 86.38 0.38 5.69 16 13 C 0.13 4.82 3.21 44.97 0.14 4.97 16 14 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 15 C 0.06 1.94 6.29 72.08 0.45 2.39 16 16 O -0.40 -14.52 10.74 -148.98 -1.60 -16.12 16 17 C 0.05 1.69 6.98 72.08 0.50 2.19 16 18 C 0.15 6.74 5.40 86.35 0.47 7.20 16 19 N -0.60 -27.58 3.03 -673.74 -2.04 -29.62 16 20 C -0.24 -11.88 7.10 84.03 0.60 -11.28 16 21 H 0.07 3.37 5.76 -2.91 -0.02 3.35 16 22 C -0.03 -1.30 5.01 84.86 0.42 -0.87 16 23 N -0.92 -49.58 11.20 21.65 0.24 -49.34 16 24 Si 0.94 43.04 29.57 68.60 2.03 45.07 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.50 5.94 -2.39 -0.01 2.49 16 33 H 0.20 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.15 4.86 7.10 -2.91 -0.02 4.84 16 35 H 0.41 16.85 5.86 -92.71 -0.54 16.31 16 36 H 0.05 2.09 7.56 -2.38 -0.02 2.07 16 37 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 3.33 6.32 -2.39 -0.02 3.31 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 Total: -1.00 -63.79 367.64 0.72 -63.07 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.48 Total: 30.28 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 6.30 Total: 19.69 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -3.54 Total: -107.78 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -3.25 Total: -54.82 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.30 Total: 4.49 kcal Total: -63.79 0.72 -63.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050980698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.707 kcal (2) G-P(sol) polarization free energy of solvation -63.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds