Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99979 * 2 1 4 4 C 1.50697 * 109.47293 * 180.02562 * 3 2 1 5 5 C 1.33821 * 122.44555 * 269.71157 * 4 3 2 6 6 S 1.70617 * 110.95101 * 180.26848 * 5 4 3 7 7 C 1.75829 * 91.56348 * 0.02562 * 6 5 4 8 8 C 1.46587 * 125.45707 * 179.97438 * 7 6 5 9 9 O 1.21698 * 120.00171 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00051 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00117 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47235 * 179.97438 * 11 10 8 13 13 H 1.09010 * 109.67877 * 59.14726 * 12 11 10 14 14 C 1.53291 * 109.68264 * 179.66317 * 12 11 10 15 15 O 1.42964 * 109.22311 * 172.02759 * 14 12 11 16 16 C 1.42961 * 114.16859 * 297.41791 * 15 14 12 17 17 C 1.53302 * 109.21940 * 62.57986 * 16 15 14 18 18 N 1.47151 * 109.68463 * 298.62965 * 12 11 10 19 19 C 1.36942 * 120.97764 * 9.71081 * 18 12 11 20 20 H 1.07999 * 120.00113 * 328.60856 * 19 18 12 21 21 C 1.38814 * 119.99518 * 148.61746 * 19 18 12 22 22 N 1.31618 * 120.00158 * 348.78971 * 21 19 18 23 23 Si 1.86802 * 119.99720 * 168.79379 * 21 19 18 24 24 H 1.48502 * 109.46930 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47065 * 119.99739 * 23 21 19 26 26 H 1.48496 * 109.46839 * 239.99763 * 23 21 19 27 27 C 1.36640 * 109.08379 * 0.02562 * 7 6 5 28 28 H 1.09001 * 109.47363 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46855 * 299.99726 * 1 2 3 30 30 H 1.08998 * 109.47149 * 59.99838 * 1 2 3 31 31 H 1.09008 * 109.47194 * 59.99530 * 3 2 1 32 32 H 1.09001 * 109.47394 * 300.00527 * 3 2 1 33 33 H 1.07995 * 124.52384 * 0.26664 * 5 4 3 34 34 H 0.96999 * 119.99859 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.46599 * 299.99895 * 11 10 8 36 36 H 1.08994 * 109.47161 * 59.99807 * 11 10 8 37 37 H 1.09004 * 109.51083 * 291.95212 * 14 12 11 38 38 H 1.09001 * 109.51220 * 52.05166 * 14 12 11 39 39 H 1.08991 * 109.51432 * 182.50228 * 16 15 14 40 40 H 1.08997 * 109.51391 * 302.66303 * 16 15 14 41 41 H 1.08994 * 109.67945 * 67.42400 * 17 16 15 42 42 H 1.08999 * 109.67898 * 187.97525 * 17 16 15 43 43 H 0.96997 * 119.99609 * 180.02562 * 22 21 19 44 44 H 1.07998 * 123.35186 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2291 1.1353 1.1284 6 16 5.8962 1.0092 0.7876 7 6 5.5928 1.0286 -0.9442 8 6 6.6188 0.9499 -1.9881 9 8 6.2961 0.9723 -3.1614 10 7 7.9195 0.8527 -1.6487 11 6 8.9449 0.7746 -2.6920 12 6 10.3265 0.6722 -2.0427 13 1 10.3696 -0.2137 -1.4090 14 6 11.4028 0.5817 -3.1304 15 8 12.6941 0.6739 -2.5237 16 6 12.9399 1.9139 -1.8559 17 6 11.9422 2.0726 -0.7029 18 7 10.5838 1.8737 -1.2329 19 6 9.5889 2.7805 -0.9814 20 1 8.8074 2.9405 -1.7094 21 6 9.5851 3.4940 0.2093 22 7 10.3983 3.1499 1.1854 23 14 8.4258 4.9426 0.4264 24 1 7.6219 5.1226 -0.8092 25 1 7.5195 4.6837 1.5739 26 1 9.2149 6.1733 0.6866 27 6 4.2475 1.1301 -1.1609 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8084 1.1693 2.1224 34 1 8.1767 0.8344 -0.7136 35 1 8.7676 -0.1054 -3.3105 36 1 8.9009 1.6696 -3.3125 37 1 11.3132 -0.3707 -3.6529 38 1 11.2736 1.3995 -3.8393 39 1 13.9559 1.9198 -1.4616 40 1 12.8168 2.7370 -2.5597 41 1 12.1483 1.3280 0.0660 42 1 12.0279 3.0728 -0.2784 43 1 10.3953 3.6483 2.0175 44 1 3.8055 1.1620 -2.1458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051010740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = -59.671442 kcal Electronic energy + Delta-G solvation = -27848.846227 eV Core-core repulsion = 23894.383103 eV Total energy + Delta-G solvation = -3954.463125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.50363 -38.76552 -38.21557 -36.83850 -35.31081 -33.61385 -31.72325 -30.66435 -30.17292 -27.90283 -27.24277 -26.03183 -25.77556 -23.58309 -23.43596 -21.67494 -20.25985 -19.71145 -18.92684 -18.18642 -16.78325 -16.57618 -16.24230 -15.91659 -15.77448 -15.46806 -15.15997 -14.92434 -14.68741 -14.41709 -13.90196 -13.87509 -13.68141 -13.21007 -13.00925 -12.94943 -12.80173 -12.57817 -12.16876 -12.01707 -11.86591 -11.60017 -11.47210 -11.08044 -10.92149 -10.79139 -10.65910 -10.43223 -10.26232 -10.08195 -9.88763 -9.71254 -9.62452 -9.01376 -8.79405 -8.67431 -8.41990 -8.28714 -6.75852 -5.94143 -3.43849 0.70401 1.66065 2.05304 2.33566 3.24723 3.34780 3.38681 3.57244 3.67176 3.93963 4.31905 4.51417 4.86144 4.87030 5.07403 5.10669 5.14134 5.21741 5.23906 5.24846 5.38153 5.43166 5.55623 5.60074 5.70187 5.82320 5.95416 6.01429 6.07461 6.13765 6.19894 6.30916 6.35506 6.41021 6.50049 6.72182 6.94298 6.99333 7.04434 7.45949 7.68257 7.84540 8.08912 8.25948 8.68225 9.02729 9.62692 10.22123 11.12283 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003521 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.011115 B = 7950.764839 C = 9083.457825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.125 3.875 4 C -0.126 4.126 5 C -0.228 4.228 6 S 0.247 5.753 7 C -0.256 4.256 8 C 0.583 3.417 9 O -0.551 6.551 10 N -0.690 5.690 11 C 0.136 3.864 12 C 0.124 3.876 13 H 0.042 0.958 14 C 0.057 3.943 15 O -0.392 6.392 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.258 4.258 20 H 0.073 0.927 21 C 0.015 3.985 22 N -0.896 5.896 23 Si 0.885 3.115 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.287 1.287 27 C -0.053 4.053 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.167 0.833 34 H 0.413 0.587 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.030 0.970 42 H 0.092 0.908 43 H 0.255 0.745 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -4.461 -0.117 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.047 3.953 4 C -0.140 4.140 5 C -0.366 4.366 6 S 0.516 5.484 7 C -0.376 4.376 8 C 0.369 3.631 9 O -0.432 6.432 10 N -0.340 5.340 11 C 0.012 3.988 12 C 0.017 3.983 13 H 0.060 0.940 14 C -0.022 4.022 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.317 5.317 19 C -0.387 4.387 20 H 0.091 0.909 21 C -0.185 4.185 22 N -0.540 5.540 23 Si 0.714 3.286 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.213 1.213 27 C -0.086 4.086 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.184 0.816 34 H 0.251 0.749 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.695 -4.774 0.149 10.807 hybrid contribution -2.213 1.524 0.029 2.687 sum -11.907 -3.250 0.178 12.344 Atomic orbital electron populations 1.22745 0.81207 1.02752 0.99915 1.87992 1.19362 1.27685 1.95381 1.20993 0.88642 0.84832 1.00854 1.18315 0.95455 1.08121 0.92063 1.25280 0.99828 1.08328 1.03188 1.83672 1.01891 1.64699 0.98116 1.24718 0.98071 1.17190 0.97669 1.16881 0.81973 0.77168 0.87104 1.90763 1.81893 1.52350 1.18195 1.45884 1.04582 1.71914 1.11662 1.21218 0.86353 1.01265 0.89948 1.21445 0.91722 0.91972 0.93185 0.94031 1.22852 0.84110 1.00806 0.94478 1.87804 1.32852 1.37932 1.72469 1.23350 0.99687 0.85304 0.95969 1.21411 0.82437 1.02462 0.91804 1.44093 1.06813 1.20530 1.60265 1.19266 1.05239 1.15007 0.99207 0.90950 1.25086 0.98419 0.99916 0.95060 1.69984 1.39532 1.40130 1.04336 0.86471 0.80894 0.83030 0.78230 1.19990 1.21000 1.21334 1.20473 0.90999 0.97546 0.99536 0.89637 0.94167 0.94016 0.92440 0.92181 0.81574 0.74905 0.91959 0.91144 0.89851 0.93437 0.90230 0.94102 0.95190 0.89034 0.93440 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.67 10.69 -35.23 -0.38 -5.04 16 3 C 0.13 1.41 6.18 36.00 0.22 1.63 16 4 C -0.13 -1.74 5.41 -106.46 -0.58 -2.32 16 5 C -0.23 -3.06 10.67 29.18 0.31 -2.75 16 6 S 0.25 3.86 22.16 -107.50 -2.38 1.47 16 7 C -0.26 -4.48 6.45 -36.79 -0.24 -4.72 16 8 C 0.58 11.54 7.78 -12.89 -0.10 11.44 16 9 O -0.55 -12.06 16.84 5.19 0.09 -11.97 16 10 N -0.69 -13.43 3.81 -61.65 -0.23 -13.67 16 11 C 0.14 2.54 4.44 -4.04 -0.02 2.52 16 12 C 0.12 2.40 3.20 -67.43 -0.22 2.19 16 13 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 14 C 0.06 0.99 6.29 37.31 0.23 1.22 16 15 O -0.39 -7.52 10.74 -35.23 -0.38 -7.90 16 16 C 0.03 0.66 6.99 37.31 0.26 0.92 16 17 C 0.14 3.22 5.38 -3.52 -0.02 3.20 16 18 N -0.59 -13.42 3.03 -164.29 -0.50 -13.91 16 19 C -0.26 -6.31 7.10 -15.06 -0.11 -6.42 16 20 H 0.07 1.83 5.83 -52.49 -0.31 1.53 16 21 C 0.02 0.38 5.05 -17.43 -0.09 0.30 16 22 N -0.90 -23.52 11.18 55.49 0.62 -22.90 16 23 Si 0.88 20.51 29.57 -169.99 -5.03 15.48 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 C -0.05 -0.84 9.79 -40.44 -0.40 -1.23 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.54 8.12 -51.92 -0.42 0.12 16 32 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.41 8.32 6.50 -40.82 -0.27 8.05 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.41 7.52 -51.93 -0.39 1.02 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 2.24 6.37 -51.93 -0.33 1.91 16 43 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 44 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -29.57 373.37 -8.52 -38.09 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.34 Total: 7.39 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 0.38 Total: 7.33 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.11 Total: -50.48 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.67 Total: -24.91 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -2.38 Total: 1.47 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.57 -8.52 -38.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051010740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.577 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds