Wall clock time and date at job start Sat Apr 11 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99979 * 2 1 4 4 C 1.50697 * 109.47293 * 180.02562 * 3 2 1 5 5 C 1.33821 * 122.44555 * 269.71157 * 4 3 2 6 6 S 1.70617 * 110.95101 * 180.26848 * 5 4 3 7 7 C 1.75829 * 91.56348 * 0.02562 * 6 5 4 8 8 C 1.46587 * 125.45707 * 179.97438 * 7 6 5 9 9 O 1.21698 * 120.00171 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00051 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00117 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47235 * 179.97438 * 11 10 8 13 13 H 1.09010 * 109.67877 * 59.14726 * 12 11 10 14 14 C 1.53291 * 109.68264 * 179.66317 * 12 11 10 15 15 O 1.42964 * 109.22311 * 172.02759 * 14 12 11 16 16 C 1.42961 * 114.16859 * 297.41791 * 15 14 12 17 17 C 1.53302 * 109.21940 * 62.57986 * 16 15 14 18 18 N 1.47151 * 109.68463 * 298.62965 * 12 11 10 19 19 C 1.36942 * 120.97764 * 9.71081 * 18 12 11 20 20 H 1.07999 * 120.00113 * 328.60856 * 19 18 12 21 21 C 1.38814 * 119.99518 * 148.61746 * 19 18 12 22 22 N 1.31618 * 120.00158 * 348.78971 * 21 19 18 23 23 Si 1.86802 * 119.99720 * 168.79379 * 21 19 18 24 24 H 1.48502 * 109.46930 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47065 * 119.99739 * 23 21 19 26 26 H 1.48496 * 109.46839 * 239.99763 * 23 21 19 27 27 C 1.36640 * 109.08379 * 0.02562 * 7 6 5 28 28 H 1.09001 * 109.47363 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46855 * 299.99726 * 1 2 3 30 30 H 1.08998 * 109.47149 * 59.99838 * 1 2 3 31 31 H 1.09008 * 109.47194 * 59.99530 * 3 2 1 32 32 H 1.09001 * 109.47394 * 300.00527 * 3 2 1 33 33 H 1.07995 * 124.52384 * 0.26664 * 5 4 3 34 34 H 0.96999 * 119.99859 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.46599 * 299.99895 * 11 10 8 36 36 H 1.08994 * 109.47161 * 59.99807 * 11 10 8 37 37 H 1.09004 * 109.51083 * 291.95212 * 14 12 11 38 38 H 1.09001 * 109.51220 * 52.05166 * 14 12 11 39 39 H 1.08991 * 109.51432 * 182.50228 * 16 15 14 40 40 H 1.08997 * 109.51391 * 302.66303 * 16 15 14 41 41 H 1.08994 * 109.67945 * 67.42400 * 17 16 15 42 42 H 1.08999 * 109.67898 * 187.97525 * 17 16 15 43 43 H 0.96997 * 119.99609 * 180.02562 * 22 21 19 44 44 H 1.07998 * 123.35186 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2291 1.1353 1.1284 6 16 5.8962 1.0092 0.7876 7 6 5.5928 1.0286 -0.9442 8 6 6.6188 0.9499 -1.9881 9 8 6.2961 0.9723 -3.1614 10 7 7.9195 0.8527 -1.6487 11 6 8.9449 0.7746 -2.6920 12 6 10.3265 0.6722 -2.0427 13 1 10.3696 -0.2137 -1.4090 14 6 11.4028 0.5817 -3.1304 15 8 12.6941 0.6739 -2.5237 16 6 12.9399 1.9139 -1.8559 17 6 11.9422 2.0726 -0.7029 18 7 10.5838 1.8737 -1.2329 19 6 9.5889 2.7805 -0.9814 20 1 8.8074 2.9405 -1.7094 21 6 9.5851 3.4940 0.2093 22 7 10.3983 3.1499 1.1854 23 14 8.4258 4.9426 0.4264 24 1 7.6219 5.1226 -0.8092 25 1 7.5195 4.6837 1.5739 26 1 9.2149 6.1733 0.6866 27 6 4.2475 1.1301 -1.1609 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8084 1.1693 2.1224 34 1 8.1767 0.8344 -0.7136 35 1 8.7676 -0.1054 -3.3105 36 1 8.9009 1.6696 -3.3125 37 1 11.3132 -0.3707 -3.6529 38 1 11.2736 1.3995 -3.8393 39 1 13.9559 1.9198 -1.4616 40 1 12.8168 2.7370 -2.5597 41 1 12.1483 1.3280 0.0660 42 1 12.0279 3.0728 -0.2784 43 1 10.3953 3.6483 2.0175 44 1 3.8055 1.1620 -2.1458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051010740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:20 Heat of formation + Delta-G solvation = -79.193664 kcal Electronic energy + Delta-G solvation = -27849.692775 eV Core-core repulsion = 23894.383103 eV Total energy + Delta-G solvation = -3955.309672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.98811 -40.06626 -39.51547 -37.84450 -36.92205 -35.34042 -33.39367 -32.29457 -31.44003 -29.03691 -28.72997 -27.41152 -26.64794 -25.26775 -24.82806 -23.23344 -21.69314 -21.34443 -20.10024 -19.58742 -18.43561 -17.65358 -17.45591 -17.32062 -17.21569 -16.62425 -16.29586 -16.27315 -16.17112 -16.12482 -15.53016 -15.38326 -15.10372 -14.71669 -14.40242 -14.30540 -13.98990 -13.94325 -13.49184 -13.14032 -13.05072 -12.91831 -12.90751 -12.74300 -12.50877 -12.26322 -12.13389 -12.01373 -11.87160 -11.82539 -11.32775 -11.19109 -10.67206 -10.63300 -10.56145 -10.13523 -9.79843 -9.57192 -8.61402 -7.87247 -5.37905 -0.52615 0.44162 0.87904 1.17714 1.38037 1.44645 1.50799 2.10456 2.23590 2.44906 3.03711 3.11500 3.29114 3.43578 3.78103 3.93421 3.99889 4.08256 4.21110 4.21552 4.32017 4.40160 4.48418 4.50826 4.57021 4.58443 4.60781 4.63072 4.66632 4.72610 4.82518 4.88891 5.00739 5.10802 5.21742 5.27232 5.29625 5.44589 5.63509 5.69712 6.21780 6.30296 6.37577 6.53252 7.11262 7.13945 7.76241 8.32896 9.17316 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003521 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.011115 B = 7950.764839 C = 9083.457825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.126 3.874 4 C -0.134 4.134 5 C -0.206 4.206 6 S 0.226 5.774 7 C -0.291 4.291 8 C 0.582 3.418 9 O -0.580 6.580 10 N -0.692 5.692 11 C 0.140 3.860 12 C 0.125 3.875 13 H 0.038 0.962 14 C 0.059 3.941 15 O -0.397 6.397 16 C 0.046 3.954 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.246 4.246 20 H 0.063 0.937 21 C -0.019 4.019 22 N -0.920 5.920 23 Si 0.925 3.075 24 H -0.282 1.282 25 H -0.278 1.278 26 H -0.291 1.291 27 C -0.044 4.044 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.199 0.801 34 H 0.409 0.591 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.118 0.882 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.043 0.957 41 H 0.008 0.992 42 H 0.066 0.934 43 H 0.252 0.748 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 -4.834 -0.116 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.048 3.952 4 C -0.147 4.147 5 C -0.344 4.344 6 S 0.495 5.505 7 C -0.411 4.411 8 C 0.369 3.631 9 O -0.464 6.464 10 N -0.342 5.342 11 C 0.017 3.983 12 C 0.018 3.982 13 H 0.055 0.945 14 C -0.020 4.020 15 O -0.315 6.315 16 C -0.032 4.032 17 C 0.024 3.976 18 N -0.331 5.331 19 C -0.376 4.376 20 H 0.081 0.919 21 C -0.217 4.217 22 N -0.565 5.565 23 Si 0.755 3.245 24 H -0.208 1.208 25 H -0.204 1.204 26 H -0.218 1.218 27 C -0.078 4.078 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.216 0.784 34 H 0.246 0.754 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.055 -5.159 0.142 12.200 hybrid contribution -1.889 1.588 0.020 2.468 sum -12.944 -3.571 0.162 13.428 Atomic orbital electron populations 1.22948 0.79217 1.03828 1.01142 1.87938 1.21565 1.28120 1.95650 1.21064 0.86609 0.84999 1.02554 1.18587 0.97192 1.07642 0.91245 1.25647 0.98168 1.05945 1.04626 1.83726 1.04151 1.65477 0.97137 1.24566 0.98165 1.20344 0.98066 1.17184 0.82291 0.76321 0.87304 1.90726 1.82321 1.53909 1.19429 1.45917 1.04875 1.71871 1.11503 1.21214 0.85892 1.01488 0.89747 1.21571 0.92969 0.90308 0.93311 0.94463 1.22968 0.82541 1.02868 0.93595 1.87808 1.33544 1.37816 1.72347 1.23219 0.99829 0.85534 0.94591 1.21246 0.83387 1.00240 0.92715 1.44279 1.06742 1.21505 1.60548 1.19237 1.04948 1.14868 0.98533 0.91910 1.25461 0.99555 1.01524 0.95142 1.70080 1.40852 1.40990 1.04557 0.85841 0.79706 0.81158 0.77831 1.20751 1.20367 1.21827 1.20718 0.90607 0.95960 1.00539 0.88757 0.92618 0.93068 0.90125 0.91140 0.78367 0.75383 0.89710 0.92726 0.86367 0.93146 0.87729 0.93824 0.97357 0.91567 0.93875 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.01 10.69 -148.98 -1.59 -10.61 16 3 C 0.13 2.48 6.18 71.23 0.44 2.92 16 4 C -0.13 -3.45 5.41 -21.05 -0.11 -3.56 16 5 C -0.21 -5.07 10.67 66.82 0.71 -4.36 16 6 S 0.23 6.96 22.16 -56.49 -1.25 5.70 16 7 C -0.29 -10.24 6.45 24.08 0.16 -10.08 16 8 C 0.58 23.36 7.78 86.42 0.67 24.04 16 9 O -0.58 -25.77 16.84 -4.34 -0.07 -25.84 16 10 N -0.69 -27.31 3.81 -467.18 -1.78 -29.08 16 11 C 0.14 5.20 4.44 86.38 0.38 5.58 16 12 C 0.12 4.76 3.20 44.96 0.14 4.90 16 13 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 14 C 0.06 1.93 6.29 72.08 0.45 2.39 16 15 O -0.40 -14.41 10.74 -148.98 -1.60 -16.01 16 16 C 0.05 1.69 6.99 72.08 0.50 2.19 16 17 C 0.15 6.72 5.38 86.35 0.46 7.18 16 18 N -0.60 -27.58 3.03 -673.69 -2.04 -29.62 16 19 C -0.25 -12.17 7.10 84.03 0.60 -11.58 16 20 H 0.06 3.23 5.83 -2.91 -0.02 3.22 16 21 C -0.02 -0.99 5.05 84.86 0.43 -0.56 16 22 N -0.92 -49.14 11.18 21.65 0.24 -48.90 16 23 Si 0.93 42.46 29.57 68.60 2.03 44.49 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 C -0.04 -1.38 9.79 21.71 0.21 -1.16 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 1.21 8.12 -2.38 -0.02 1.20 16 32 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 33 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.41 16.82 6.50 -92.71 -0.60 16.22 16 35 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 36 H 0.05 2.20 7.52 -2.39 -0.02 2.18 16 37 H 0.12 3.08 8.14 -2.38 -0.02 3.07 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 42 H 0.07 3.31 6.37 -2.39 -0.02 3.29 16 43 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 44 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -63.88 373.37 0.65 -63.23 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.42 Total: 27.16 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.30 Total: 19.48 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -3.58 Total: -107.61 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -3.27 Total: -52.46 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.25 Total: 5.70 kcal Total: -63.88 0.65 -63.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051010740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.963 kcal (2) G-P(sol) polarization free energy of solvation -63.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds