Wall clock time and date at job start Sat Apr 11 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99828 * 2 1 4 4 C 1.50704 * 109.46763 * 179.97438 * 3 2 1 5 5 C 1.37468 * 123.35588 * 359.97438 * 4 3 2 6 6 C 1.33814 * 115.10561 * 180.02562 * 5 4 3 7 7 S 1.70619 * 110.95156 * 359.72521 * 6 5 4 8 8 C 1.36649 * 123.35012 * 180.02562 * 4 3 2 9 9 C 1.46579 * 125.45811 * 359.97438 * 8 4 3 10 10 O 1.21703 * 120.00115 * 0.02562 * 9 8 4 11 11 N 1.34783 * 120.00204 * 179.97438 * 9 8 4 12 12 C 1.46498 * 120.00054 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47137 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.68067 * 300.06264 * 13 12 11 15 15 C 1.53299 * 109.71613 * 179.52573 * 13 12 11 16 16 O 1.42959 * 109.22557 * 187.95440 * 15 13 12 17 17 C 1.42960 * 114.16560 * 62.57945 * 16 15 13 18 18 C 1.53719 * 109.14900 * 297.28835 * 17 16 15 19 19 N 1.47150 * 109.68422 * 60.58017 * 13 12 11 20 20 C 1.36943 * 120.98055 * 350.27108 * 19 13 12 21 21 H 1.08000 * 119.99539 * 31.37949 * 20 19 13 22 22 C 1.38809 * 119.99883 * 211.38223 * 20 19 13 23 23 N 1.31622 * 119.99614 * 196.04382 * 22 20 19 24 24 Si 1.86800 * 120.00428 * 16.04028 * 22 20 19 25 25 H 1.48497 * 109.47147 * 273.97212 * 24 22 20 26 26 H 1.48504 * 109.46817 * 33.97412 * 24 22 20 27 27 H 1.48498 * 109.47222 * 153.96807 * 24 22 20 28 28 H 1.09000 * 109.47106 * 299.99640 * 1 2 3 29 29 H 1.08995 * 109.46999 * 60.00048 * 1 2 3 30 30 H 1.08997 * 109.46738 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47144 * 60.00428 * 3 2 1 32 32 H 1.08995 * 109.47429 * 299.99594 * 3 2 1 33 33 H 1.07999 * 122.44465 * 359.97438 * 5 4 3 34 34 H 1.08001 * 124.52676 * 180.02562 * 6 5 4 35 35 H 0.96999 * 119.99897 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.47451 * 59.99798 * 12 11 9 37 37 H 1.08999 * 109.47086 * 299.99944 * 12 11 9 38 38 H 1.09003 * 109.50823 * 307.88376 * 15 13 12 39 39 H 1.08999 * 109.51280 * 67.97769 * 15 13 12 40 40 H 1.09005 * 109.51468 * 57.34196 * 17 16 15 41 41 H 1.09002 * 109.51728 * 177.49685 * 17 16 15 42 42 H 1.09000 * 109.83727 * 292.85519 * 18 17 16 43 43 H 1.08996 * 109.74651 * 172.16306 * 18 17 16 44 44 H 0.96995 * 120.00127 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1753 -0.0179 0.0016 6 6 5.5106 0.0689 0.0026 7 16 6.0161 1.6985 -0.0053 8 6 4.3516 2.2650 0.0013 9 6 3.9313 3.6692 0.0009 10 8 2.7471 3.9500 0.0005 11 7 4.8563 4.6495 0.0022 12 6 4.4363 6.0530 0.0024 13 6 5.6719 6.9552 0.0033 14 1 6.2712 6.7561 0.8918 15 6 5.2387 8.4256 -0.0085 16 8 6.3890 9.2538 -0.1944 17 6 7.0607 9.0515 -1.4400 18 6 7.5908 7.6098 -1.4986 19 7 6.4741 6.6982 -1.2033 20 6 6.1933 5.6384 -2.0239 21 1 5.1756 5.2933 -2.1311 22 6 7.2168 5.0078 -2.7179 23 7 6.9346 4.2153 -3.7302 24 14 8.9946 5.2839 -2.2153 25 1 9.5144 6.5036 -2.8841 26 1 9.0715 5.4562 -0.7423 27 1 9.8112 4.1114 -2.6197 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.6562 -0.9650 0.0024 34 1 6.1792 -0.7793 0.0031 35 1 5.8001 4.4258 0.0029 36 1 3.8390 6.2534 0.8919 37 1 3.8406 6.2541 -0.8880 38 1 4.5349 8.5913 -0.8242 39 1 4.7611 8.6721 0.9399 40 1 6.3636 9.2194 -2.2611 41 1 7.8949 9.7483 -1.5214 42 1 8.3800 7.4755 -0.7588 43 1 7.9814 7.4012 -2.4946 44 1 7.6498 3.7749 -4.2154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051210574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:25 Heat of formation + Delta-G solvation = -52.336034 kcal Electronic energy + Delta-G solvation = -28376.411645 eV Core-core repulsion = 24422.266607 eV Total energy + Delta-G solvation = -3954.145037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.63277 -38.84394 -38.03213 -36.68707 -35.45555 -33.70106 -31.84084 -31.13650 -30.25874 -28.18275 -27.46984 -26.01939 -24.93236 -23.48269 -23.25076 -22.32034 -20.74222 -19.99837 -18.55831 -18.05796 -16.83049 -16.28217 -16.06316 -15.94165 -15.79805 -15.41883 -15.23689 -15.02966 -14.73096 -14.41185 -14.21395 -14.00793 -13.95325 -13.49649 -13.05194 -12.94314 -12.58852 -12.27243 -12.16721 -12.01105 -11.91425 -11.84651 -11.60536 -11.24781 -11.17397 -10.81768 -10.64335 -10.54447 -10.39201 -9.86161 -9.74586 -9.67575 -9.61629 -9.30553 -8.75301 -8.61788 -8.26648 -8.14172 -7.05599 -6.07172 -3.52181 0.80736 1.78593 2.18975 2.66236 3.18380 3.35890 3.37377 3.56671 3.75814 3.83362 4.26366 4.37687 4.61933 5.03123 5.17283 5.20924 5.32305 5.34059 5.38173 5.47582 5.53038 5.59274 5.63085 5.63876 5.69522 5.75026 5.76226 5.86011 5.87378 5.96913 6.07894 6.17960 6.20573 6.31939 6.43749 6.47986 6.52445 6.67377 6.97259 7.22980 7.56323 7.77549 8.08213 8.21192 8.68744 8.75086 9.54257 9.91324 11.06446 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.004067 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.389106 B = 6883.492927 C = 8180.556433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.394 6.394 3 C 0.129 3.871 4 C -0.037 4.037 5 C -0.130 4.130 6 C -0.248 4.248 7 S 0.235 5.765 8 C -0.253 4.253 9 C 0.588 3.412 10 O -0.552 6.552 11 N -0.689 5.689 12 C 0.138 3.862 13 C 0.127 3.873 14 H 0.046 0.954 15 C 0.055 3.945 16 O -0.388 6.388 17 C 0.046 3.954 18 C 0.090 3.910 19 N -0.607 5.607 20 C -0.273 4.273 21 H 0.096 0.904 22 C 0.035 3.965 23 N -0.896 5.896 24 Si 0.876 3.124 25 H -0.285 1.285 26 H -0.271 1.271 27 H -0.301 1.301 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.165 0.835 35 H 0.410 0.590 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.034 0.966 43 H 0.083 0.917 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 -3.528 8.765 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.313 6.313 3 C 0.051 3.949 4 C -0.053 4.053 5 C -0.161 4.161 6 C -0.386 4.386 7 S 0.504 5.496 8 C -0.374 4.374 9 C 0.374 3.626 10 O -0.434 6.434 11 N -0.339 5.339 12 C 0.014 3.986 13 C 0.020 3.980 14 H 0.064 0.936 15 C -0.024 4.024 16 O -0.306 6.306 17 C -0.032 4.032 18 C -0.035 4.035 19 N -0.334 5.334 20 C -0.401 4.401 21 H 0.114 0.886 22 C -0.166 4.166 23 N -0.537 5.537 24 Si 0.706 3.294 25 H -0.213 1.213 26 H -0.196 1.196 27 H -0.229 1.229 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.164 0.836 34 H 0.183 0.817 35 H 0.248 0.752 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.101 0.899 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.668 -2.756 8.748 9.878 hybrid contribution 0.095 -0.860 -0.302 0.916 sum -3.574 -3.615 8.446 9.858 Atomic orbital electron populations 1.22690 0.80965 1.02360 1.00202 1.87788 1.19644 1.28299 1.95618 1.20958 0.88101 0.83663 1.02169 1.19074 0.95281 0.91432 0.99539 1.19699 0.92673 0.99113 1.04609 1.25300 1.00109 1.02891 1.10301 1.83411 1.04133 0.96201 1.65814 1.24386 0.97556 0.97250 1.18190 1.16824 0.85723 0.83253 0.76812 1.90733 1.16702 1.83526 1.52458 1.45805 1.10089 1.05557 1.72460 1.21169 0.96008 0.79900 1.01551 1.21470 0.92316 0.93363 0.90864 0.93611 1.22895 0.87744 0.90578 1.01165 1.87825 1.42867 1.61425 1.38513 1.23145 0.96354 0.97751 0.85952 1.22169 0.91117 0.89603 1.00613 1.44448 1.34543 1.30148 1.24274 1.18999 0.94904 1.06391 1.19761 0.88634 1.25329 0.97390 0.96562 0.97309 1.69786 1.32464 1.32234 1.19266 0.87121 0.86718 0.76150 0.79375 1.21287 1.19597 1.22924 0.94090 0.93954 0.89827 0.91067 0.90805 0.83580 0.81701 0.75226 0.91764 0.90844 0.92871 0.89341 0.92947 0.89790 0.94847 0.89877 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.58 9.62 -35.23 -0.34 -5.92 16 3 C 0.13 2.03 4.91 36.01 0.18 2.20 16 4 C -0.04 -0.63 5.90 -105.47 -0.62 -1.25 16 5 C -0.13 -1.94 9.48 -41.42 -0.39 -2.33 16 6 C -0.25 -3.49 10.92 29.18 0.32 -3.17 16 7 S 0.23 3.81 22.16 -107.50 -2.38 1.42 16 8 C -0.25 -4.59 6.45 -36.79 -0.24 -4.82 16 9 C 0.59 11.58 7.78 -12.89 -0.10 11.48 16 10 O -0.55 -11.60 14.87 5.19 0.08 -11.52 16 11 N -0.69 -13.23 3.77 -61.65 -0.23 -13.46 16 12 C 0.14 2.46 4.45 -4.05 -0.02 2.44 16 13 C 0.13 2.28 3.20 -67.42 -0.22 2.07 16 14 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 15 C 0.06 0.88 6.29 37.31 0.23 1.11 16 16 O -0.39 -6.78 10.74 -35.23 -0.38 -7.16 16 17 C 0.05 0.80 7.00 37.53 0.26 1.06 16 18 C 0.09 1.83 4.40 -3.31 -0.01 1.82 16 19 N -0.61 -13.05 2.77 -164.04 -0.45 -13.51 16 20 C -0.27 -6.75 7.50 -15.06 -0.11 -6.86 16 21 H 0.10 2.61 6.03 -52.49 -0.32 2.29 16 22 C 0.03 0.91 5.29 -17.43 -0.09 0.82 16 23 N -0.90 -25.31 13.97 55.49 0.78 -24.54 16 24 Si 0.88 20.52 24.27 -169.99 -4.13 16.39 16 25 H -0.29 -6.51 6.42 56.52 0.36 -6.15 16 26 H -0.27 -6.21 6.79 56.52 0.38 -5.83 16 27 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.11 7.83 -51.93 -0.41 0.70 16 32 H 0.07 1.24 7.84 -51.93 -0.41 0.84 16 33 H 0.15 1.97 7.47 -52.49 -0.39 1.58 16 34 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.41 8.12 6.43 -40.82 -0.26 7.86 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.45 7.57 -51.93 -0.39 1.06 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.03 0.69 6.89 -51.93 -0.36 0.33 16 43 H 0.08 1.82 4.84 -51.93 -0.25 1.57 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -29.95 361.61 -7.52 -37.47 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.21 Total: 9.33 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 0.30 Total: 6.04 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.09 Total: -51.50 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.64 Total: -24.60 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.13 Total: 16.39 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -2.38 Total: 1.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.95 -7.52 -37.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051210574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.867 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds