Wall clock time and date at job start Sat Apr 11 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00086 * 2 1 4 4 C 1.53005 * 109.46879 * 90.00006 * 3 2 1 5 5 C 1.52994 * 109.46983 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47049 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00020 * 269.99542 * 6 5 4 8 8 C 1.34781 * 120.00034 * 90.00231 * 6 5 4 9 9 O 1.21689 * 119.99982 * 3.37461 * 8 6 5 10 10 C 1.46658 * 119.99778 * 183.38173 * 8 6 5 11 11 C 1.36544 * 125.98830 * 173.21582 * 10 8 6 12 12 C 1.40364 * 106.71224 * 180.02562 * 11 10 8 13 13 C 1.35130 * 107.11074 * 0.02562 * 12 11 10 14 14 O 1.33931 * 108.77225 * 359.97438 * 13 12 11 15 15 C 1.34780 * 120.00261 * 180.02562 * 2 1 3 16 16 O 1.21278 * 120.00370 * 179.97438 * 15 2 1 17 17 C 1.50707 * 119.99704 * 359.97438 * 15 2 1 18 18 S 1.81002 * 109.46869 * 179.97438 * 17 15 2 19 19 C 1.76201 * 99.99710 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00298 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99548 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99536 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00504 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47242 * 89.99963 * 23 21 19 25 25 H 1.48498 * 109.47551 * 210.00563 * 23 21 19 26 26 H 1.48506 * 109.46919 * 330.00598 * 23 21 19 27 27 H 1.09001 * 109.46882 * 90.00305 * 1 2 3 28 28 H 1.09003 * 109.47088 * 209.99666 * 1 2 3 29 29 H 1.08990 * 109.47094 * 329.99581 * 1 2 3 30 30 H 1.09002 * 109.46746 * 330.00290 * 3 2 1 31 31 H 1.08997 * 109.47007 * 209.99834 * 3 2 1 32 32 H 1.09005 * 109.47023 * 60.00057 * 4 3 2 33 33 H 1.09002 * 109.46940 * 300.00158 * 4 3 2 34 34 H 1.08998 * 109.47480 * 59.99615 * 5 4 3 35 35 H 1.09002 * 109.47163 * 299.99717 * 5 4 3 36 36 H 1.08999 * 109.47473 * 264.01060 * 7 6 5 37 37 H 1.08997 * 109.47230 * 24.01467 * 7 6 5 38 38 H 1.09000 * 109.46878 * 144.01278 * 7 6 5 39 39 H 1.08004 * 126.64448 * 359.97438 * 11 10 8 40 40 H 1.07995 * 126.44219 * 180.02562 * 12 11 10 41 41 H 1.08004 * 125.61662 * 180.25855 * 13 12 11 42 42 H 1.08993 * 109.46994 * 299.99604 * 17 15 2 43 43 H 1.09004 * 109.46982 * 60.00157 * 17 15 2 44 44 H 0.96997 * 119.99936 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 6 3.2169 3.0356 1.4426 6 7 3.4616 3.4582 2.8238 7 6 2.4850 4.3035 3.5151 8 6 4.5853 3.0694 3.4584 9 8 5.4252 2.4189 2.8650 10 6 4.7955 3.4301 4.8643 11 6 5.8168 2.9960 5.6600 12 6 5.6263 3.5863 6.9192 13 6 4.5109 4.3448 6.8381 14 8 4.0133 4.2483 5.5984 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4724 -0.0005 18 16 2.5617 -3.8481 -0.0020 19 6 1.4415 -5.2082 -0.0026 20 1 0.3762 -5.0305 -0.0016 21 6 1.9284 -6.5081 -0.0032 22 7 1.0916 -7.5242 -0.0041 23 14 3.7709 -6.8155 -0.0042 24 1 4.2598 -6.8974 1.3956 25 1 4.0593 -8.0926 -0.7049 26 1 4.4583 -5.7006 -0.7042 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6084 2.0283 -0.5138 31 1 3.1499 1.1383 -0.5138 32 1 3.0416 0.9506 1.9564 33 1 1.5000 1.8406 1.9564 34 1 2.6276 3.7951 0.9289 35 1 4.1694 2.9057 0.9287 36 1 2.7860 5.3479 3.4335 37 1 1.5035 4.1716 3.0598 38 1 2.4388 4.0198 4.5666 39 1 6.6158 2.3273 5.3758 40 1 6.2533 3.4583 7.7891 41 1 4.0924 4.9356 7.6395 42 1 0.7592 -2.5303 0.8897 43 1 0.7584 -2.5299 -0.8903 44 1 1.4317 -8.4326 -0.0049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001066657486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:31 Heat of formation + Delta-G solvation = -42.416433 kcal Electronic energy + Delta-G solvation = -26437.685422 eV Core-core repulsion = 22483.970531 eV Total energy + Delta-G solvation = -3953.714891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.08038 -40.01147 -39.45506 -36.53216 -35.48432 -33.48434 -32.78171 -32.41343 -30.39568 -29.29087 -27.53928 -26.86160 -25.71472 -25.42487 -23.17297 -22.20289 -21.74253 -20.18477 -19.26483 -18.12825 -17.65136 -17.02052 -16.85828 -16.65069 -16.45282 -15.84293 -15.53219 -15.11438 -14.93908 -14.68679 -14.16681 -13.76867 -13.68327 -13.52541 -13.35738 -13.34578 -13.13310 -13.05803 -12.77399 -12.73254 -12.42007 -12.34766 -12.10617 -11.88366 -11.81597 -11.22820 -10.97985 -10.85139 -10.55729 -10.53207 -10.42818 -9.82863 -9.46536 -9.22380 -8.98292 -8.97407 -8.55729 -8.45314 -6.88917 -6.26742 -3.98052 0.71816 1.98998 2.23577 2.65239 2.79343 2.89070 2.99294 3.24670 3.36406 3.54253 3.62858 4.10381 4.35990 4.53271 4.54166 4.61894 4.70785 4.75198 4.84072 4.97398 5.05624 5.08488 5.12378 5.14296 5.20005 5.27173 5.33000 5.35471 5.40997 5.43049 5.58485 5.60143 5.65378 5.80696 5.92594 5.95735 6.00401 6.03189 6.19632 6.45090 6.60302 6.92218 7.46114 7.72266 7.96380 8.43311 8.48473 9.19745 10.82436 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.002312 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.118762 B =12108.148417 C =13350.162613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.624 5.624 3 C 0.122 3.878 4 C -0.152 4.152 5 C 0.119 3.881 6 N -0.609 5.609 7 C 0.075 3.925 8 C 0.598 3.402 9 O -0.508 6.508 10 C -0.077 4.077 11 C -0.119 4.119 12 C -0.222 4.222 13 C -0.016 4.016 14 O -0.160 6.160 15 C 0.529 3.471 16 O -0.512 6.512 17 C -0.120 4.120 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.209 0.791 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 30.433 10.507 32.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.360 5.360 3 C -0.002 4.002 4 C -0.192 4.192 5 C -0.004 4.004 6 N -0.342 5.342 7 C -0.068 4.068 8 C 0.386 3.614 9 O -0.385 6.385 10 C -0.129 4.129 11 C -0.139 4.139 12 C -0.241 4.241 13 C -0.086 4.086 14 O -0.056 6.056 15 C 0.317 3.683 16 O -0.386 6.386 17 C -0.271 4.271 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.518 5.518 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.226 0.774 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.619 30.027 10.020 31.696 hybrid contribution -0.893 -0.419 0.426 1.074 sum 0.726 29.607 10.447 31.405 Atomic orbital electron populations 1.21784 0.79525 1.03170 1.01882 1.47818 1.06870 1.05615 1.75705 1.21260 0.98226 0.84842 0.95828 1.22343 1.00757 0.97622 0.98429 1.21488 1.01929 0.95809 0.81131 1.47714 1.20610 1.51084 1.14755 1.22017 0.92155 0.94289 0.98335 1.16705 0.82045 0.79652 0.83007 1.90944 1.43617 1.39104 1.64797 1.22067 0.95720 1.01487 0.93614 1.22045 0.98741 1.00614 0.92546 1.21887 1.00384 1.02527 0.99343 1.24489 0.96080 1.02016 0.85995 1.84280 1.46268 1.53691 1.21362 1.20339 0.87988 0.84676 0.75330 1.90715 1.13644 1.86768 1.47507 1.23310 1.03047 0.95234 1.05498 1.84837 1.11952 0.97525 1.97395 1.22311 0.94860 0.90913 1.58678 0.89424 1.24713 0.98556 0.94876 0.93181 1.69941 1.34784 0.98860 1.48186 0.86736 0.85357 0.79816 0.79971 1.19207 1.19954 1.15869 0.92536 0.90609 0.91410 0.90679 0.89512 0.90615 0.91729 0.89979 0.89058 0.92226 0.90469 0.89909 0.82135 0.82593 0.77418 0.88641 0.88536 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.24 59.85 0.61 1.39 16 2 N -0.62 -8.50 2.87 -181.57 -0.52 -9.02 16 3 C 0.12 1.37 5.41 -4.04 -0.02 1.35 16 4 C -0.15 -1.66 5.86 -26.73 -0.16 -1.81 16 5 C 0.12 1.10 5.41 -4.05 -0.02 1.08 16 6 N -0.61 -6.01 2.87 -183.14 -0.53 -6.54 16 7 C 0.07 0.47 9.63 59.85 0.58 1.05 16 8 C 0.60 7.64 7.64 -12.86 -0.10 7.55 16 9 O -0.51 -8.43 16.43 5.20 0.09 -8.35 16 10 C -0.08 -0.84 6.77 -36.80 -0.25 -1.09 16 11 C -0.12 -1.20 10.63 -39.39 -0.42 -1.62 16 12 C -0.22 -1.60 10.88 -39.89 -0.43 -2.04 16 13 C -0.02 -0.10 12.08 29.63 0.36 0.26 16 14 O -0.16 -1.31 7.29 4.99 0.04 -1.27 16 15 C 0.53 9.94 7.69 -10.98 -0.08 9.85 16 16 O -0.51 -11.65 15.44 5.56 0.09 -11.56 16 17 C -0.12 -2.42 4.71 36.01 0.17 -2.25 16 18 S -0.14 -3.75 18.55 -107.50 -1.99 -5.75 16 19 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 20 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 21 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 22 N -0.88 -26.88 13.97 55.49 0.78 -26.10 16 23 Si 0.86 22.26 27.74 -169.99 -4.71 17.55 16 24 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.23 -6.12 6.74 56.52 0.38 -5.74 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 29 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 31 H 0.09 1.16 7.42 -51.93 -0.39 0.77 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 35 H 0.09 1.01 7.37 -51.93 -0.38 0.63 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.35 8.03 -51.93 -0.42 -0.07 16 38 H 0.08 0.55 5.40 -51.93 -0.28 0.27 16 39 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.21 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.10 1.79 7.40 -51.92 -0.38 1.40 16 43 H 0.10 1.80 8.11 -51.91 -0.42 1.38 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -38.39 386.06 -6.91 -45.30 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.40 Total: -1.64 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 0.45 Total: 1.56 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.27 Total: -41.66 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.21 Total: -21.18 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.39 -6.91 -45.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001066657486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.884 kcal (2) G-P(sol) polarization free energy of solvation -38.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds