Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36201 * 117.00042 * 2 1 4 4 C 1.34084 * 122.50414 * 359.97438 * 3 2 1 5 5 S 1.70600 * 110.98027 * 179.97438 * 4 3 2 6 6 C 1.75819 * 91.61765 * 0.02562 * 5 4 3 7 7 C 1.46549 * 125.42631 * 179.97438 * 6 5 4 8 8 O 1.21708 * 119.99913 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99626 * 0.02562 * 7 6 5 10 10 C 1.46507 * 119.99731 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47202 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46650 * 304.99807 * 11 10 9 13 13 C 1.54796 * 109.46909 * 185.00044 * 11 10 9 14 14 N 1.45126 * 109.52992 * 172.10535 * 13 11 10 15 15 C 1.36932 * 118.75419 * 269.29048 * 14 13 11 16 16 H 1.07999 * 119.99965 * 26.66452 * 15 14 13 17 17 C 1.38814 * 119.99858 * 206.66111 * 15 14 13 18 18 N 1.31622 * 119.99793 * 16.65807 * 17 15 14 19 19 Si 1.86798 * 120.00027 * 196.65245 * 17 15 14 20 20 H 1.48496 * 109.47263 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47245 * 300.00294 * 19 17 15 22 22 H 1.48505 * 109.47012 * 60.00303 * 19 17 15 23 23 C 1.47499 * 122.48329 * 89.57046 * 14 13 11 24 24 C 1.53949 * 110.82317 * 317.97222 * 23 14 13 25 25 C 1.51537 * 109.72755 * 320.31040 * 24 23 14 26 26 O 1.38016 * 109.46599 * 64.98326 * 11 10 9 27 27 C 1.36741 * 109.14602 * 0.22417 * 6 5 4 28 28 H 1.09004 * 109.47005 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46995 * 299.99926 * 1 2 3 30 30 H 1.08995 * 109.47062 * 59.99880 * 1 2 3 31 31 H 1.08008 * 124.50772 * 0.02562 * 4 3 2 32 32 H 0.96992 * 120.00346 * 359.97438 * 9 7 6 33 33 H 1.09005 * 109.46771 * 59.99778 * 10 9 7 34 34 H 1.09004 * 109.46896 * 299.99937 * 10 9 7 35 35 H 1.09005 * 109.46492 * 52.08648 * 13 11 10 36 36 H 1.08999 * 109.46009 * 292.12417 * 13 11 10 37 37 H 0.97002 * 119.99641 * 179.97438 * 18 17 15 38 38 H 1.08995 * 109.17529 * 78.49713 * 23 14 13 39 39 H 1.09007 * 109.16444 * 197.69407 * 23 14 13 40 40 H 1.08996 * 109.46056 * 200.18150 * 24 23 14 41 41 H 1.09000 * 109.29615 * 80.33895 * 24 23 14 42 42 H 1.09003 * 109.58550 * 331.50860 * 25 24 23 43 43 H 1.09000 * 109.58890 * 211.07311 * 25 24 23 44 44 H 1.07998 * 123.36846 * 179.76778 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3670 2.3689 -0.0005 5 16 2.4295 3.7036 0.0004 6 6 3.8354 2.6478 0.0006 7 6 5.2318 3.0925 0.0009 8 8 6.1315 2.2729 0.0006 9 7 5.5196 4.4093 0.0014 10 6 6.9155 4.8539 0.0010 11 6 6.9637 6.3831 0.0010 12 1 6.3857 6.7648 -0.8407 13 6 8.4331 6.8531 -0.1265 14 7 8.4678 8.2917 -0.3142 15 6 8.4443 8.7905 -1.5892 16 1 7.9850 8.2209 -2.3835 17 6 9.0108 10.0283 -1.8608 18 7 9.8447 10.5734 -1.0006 19 14 8.5898 10.9204 -3.4471 20 1 9.3207 12.2121 -3.4976 21 1 8.9866 10.0820 -4.6068 22 1 7.1278 11.1760 -3.4982 23 6 8.5335 9.2367 0.8165 24 6 7.5955 8.7946 1.9544 25 6 6.3011 8.2628 1.3728 26 8 6.4285 6.8601 1.1804 27 6 3.4183 1.3456 -0.0050 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 0.2895 2.4445 -0.0006 32 1 4.8026 5.0624 0.0012 33 1 7.4173 4.4749 -0.8894 34 1 7.4180 4.4741 0.8906 35 1 8.8979 6.3639 -0.9826 36 1 8.9779 6.5919 0.7806 37 1 10.2409 11.4382 -1.1905 38 1 9.5572 9.2797 1.1881 39 1 8.2368 10.2276 0.4724 40 1 7.3806 9.6465 2.5995 41 1 8.0804 8.0115 2.5372 42 1 6.1045 8.7466 0.4160 43 1 5.4809 8.4641 2.0619 44 1 4.0961 0.5047 -0.0096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073723224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -74.727974 kcal Electronic energy + Delta-G solvation = -27097.552908 eV Core-core repulsion = 23142.436883 eV Total energy + Delta-G solvation = -3955.116025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18776 -40.68975 -40.10087 -37.06129 -36.80778 -35.97775 -33.68620 -33.42303 -31.04026 -29.82238 -28.75687 -27.37471 -27.06497 -25.43396 -24.08959 -22.35884 -22.26437 -21.34595 -20.60294 -19.73614 -18.85165 -18.11224 -17.65993 -17.49666 -17.19593 -16.80551 -16.73264 -16.50116 -16.12849 -15.84134 -15.51679 -15.44153 -14.83226 -14.66180 -14.36337 -14.11830 -13.96789 -13.71088 -13.67608 -13.54446 -13.12354 -13.00137 -12.72842 -12.58465 -12.50540 -12.41468 -12.10357 -12.01539 -11.91317 -11.75551 -11.46776 -11.33071 -11.30506 -10.53056 -10.31357 -10.26436 -9.94061 -9.04151 -8.71895 -7.89031 -5.36120 -0.64282 0.37848 0.82848 1.30532 1.47349 1.48329 1.55310 1.90328 2.06128 2.47977 2.52244 2.76121 3.25950 3.56351 3.70442 3.94080 4.05747 4.10974 4.13817 4.22305 4.36324 4.39883 4.42493 4.52166 4.57492 4.58329 4.68563 4.75707 4.76169 4.83285 4.84037 4.91797 5.02524 5.14717 5.19234 5.23580 5.28869 5.47375 5.62343 5.75293 6.24973 6.34967 6.37185 6.74752 7.00653 7.14787 7.87032 8.28576 9.16544 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.002332 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.991695 B =12001.481849 C =12279.277523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.087 3.913 4 C -0.328 4.328 5 S 0.282 5.718 6 C -0.265 4.265 7 C 0.588 3.412 8 O -0.569 6.569 9 N -0.705 5.705 10 C 0.141 3.859 11 C 0.086 3.914 12 H 0.048 0.952 13 C 0.123 3.877 14 N -0.605 5.605 15 C -0.270 4.270 16 H 0.068 0.932 17 C -0.045 4.045 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.296 1.296 21 H -0.278 1.278 22 H -0.275 1.275 23 C 0.185 3.815 24 C -0.164 4.164 25 C 0.091 3.909 26 O -0.392 6.392 27 C -0.078 4.078 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.201 0.799 32 H 0.410 0.590 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.250 0.750 38 H -0.006 1.006 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.110 0.890 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.032 -14.337 4.261 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.030 3.970 4 C -0.466 4.466 5 S 0.549 5.451 6 C -0.386 4.386 7 C 0.375 3.625 8 O -0.450 6.450 9 N -0.356 5.356 10 C 0.018 3.982 11 C 0.024 3.976 12 H 0.066 0.934 13 C -0.005 4.005 14 N -0.327 5.327 15 C -0.400 4.400 16 H 0.086 0.914 17 C -0.241 4.241 18 N -0.579 5.579 19 Si 0.792 3.208 20 H -0.223 1.223 21 H -0.203 1.203 22 H -0.201 1.201 23 C 0.060 3.940 24 C -0.203 4.203 25 C 0.015 3.985 26 O -0.311 6.311 27 C -0.114 4.114 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.218 0.782 32 H 0.246 0.754 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.012 0.988 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.128 0.872 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.480 -13.446 4.402 25.720 hybrid contribution 0.280 -0.267 -1.035 1.105 sum -21.199 -13.713 3.367 25.471 Atomic orbital electron populations 1.23352 0.76096 1.05653 1.02365 1.86100 1.23499 1.24982 1.89596 1.17495 0.91108 0.85683 1.02692 1.25469 1.07246 0.96798 1.17068 1.82841 0.90625 1.04962 1.66659 1.24274 0.97738 0.98557 1.17982 1.17123 0.86939 0.82436 0.75995 1.90815 1.48199 1.53920 1.52106 1.45698 1.09576 1.06215 1.74114 1.21311 0.81989 0.91881 1.03060 1.22298 0.96376 0.91600 0.87354 0.93421 1.21554 0.94590 0.84784 0.99556 1.44030 1.85597 1.00312 1.02717 1.19465 1.30570 1.02577 0.87427 0.91403 1.25775 0.96862 1.00735 1.00744 1.70229 1.30994 1.18158 1.38531 0.85400 0.77880 0.77539 0.79969 1.22264 1.20341 1.20108 1.20841 0.94509 0.92561 0.86058 1.22684 0.97655 1.01395 0.98597 1.22088 0.96640 0.79683 1.00054 1.86106 1.82354 1.24026 1.38656 1.20015 0.93834 0.96710 1.00827 0.86429 0.91547 0.91598 0.78242 0.75424 0.89632 0.90875 0.92960 0.93785 0.94120 0.98833 0.93704 0.89684 0.92117 0.94005 0.87237 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.93 113.37 1.13 1.29 16 2 O -0.33 -5.89 10.56 -95.85 -1.01 -6.90 16 3 C 0.09 1.66 6.61 21.20 0.14 1.80 16 4 C -0.33 -4.70 9.81 66.87 0.66 -4.05 16 5 S 0.28 4.40 22.15 -56.49 -1.25 3.15 16 6 C -0.26 -6.17 6.45 24.09 0.16 -6.02 16 7 C 0.59 16.94 7.78 86.41 0.67 17.61 16 8 O -0.57 -20.51 16.84 -4.37 -0.07 -20.59 16 9 N -0.71 -18.54 5.49 -467.17 -2.56 -21.10 16 10 C 0.14 4.15 5.34 86.38 0.46 4.61 16 11 C 0.09 2.82 2.68 31.21 0.08 2.90 16 12 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 13 C 0.12 4.95 5.12 87.25 0.45 5.39 16 14 N -0.60 -28.97 2.21 -697.45 -1.54 -30.52 16 15 C -0.27 -14.21 9.45 84.03 0.79 -13.41 16 16 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 17 C -0.05 -2.46 4.85 84.86 0.41 -2.04 16 18 N -0.93 -53.99 11.10 21.65 0.24 -53.75 16 19 Si 0.96 43.60 29.59 68.60 2.03 45.63 16 20 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.19 8.66 4.75 86.51 0.41 9.07 16 24 C -0.16 -5.78 5.79 30.44 0.18 -5.60 16 25 C 0.09 2.89 6.38 71.50 0.46 3.34 16 26 O -0.39 -12.61 9.38 -117.87 -1.11 -13.72 16 27 C -0.08 -1.80 10.00 21.80 0.22 -1.59 16 28 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.07 0.40 7.84 -2.39 -0.02 0.38 16 30 H 0.07 0.40 7.84 -2.39 -0.02 0.38 16 31 H 0.20 1.59 6.96 -2.91 -0.02 1.57 16 32 H 0.41 9.17 7.57 -92.71 -0.70 8.47 16 33 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.05 2.12 7.98 -2.38 -0.02 2.10 16 36 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16 37 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 38 H -0.01 -0.34 8.03 -2.39 -0.02 -0.36 16 39 H 0.04 2.33 6.43 -2.38 -0.02 2.32 16 40 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.06 2.12 8.01 -2.39 -0.02 2.10 16 42 H 0.04 1.52 7.41 -2.39 -0.02 1.50 16 43 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -68.66 372.86 1.24 -67.41 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.32 Total: 17.06 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.21 Total: 13.32 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.87 Total: -105.37 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -2.19 Total: -41.21 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.25 Total: 3.15 kcal Total: -68.66 1.24 -67.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073723224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.313 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds