Wall clock time and date at job start Sat Apr 11 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35784 * 116.99505 * 2 1 4 4 C 1.38021 * 123.47796 * 0.20034 * 3 2 1 5 5 C 1.33607 * 115.08310 * 180.26788 * 4 3 2 6 6 S 1.70573 * 111.15088 * 359.75154 * 5 4 3 7 7 C 1.37276 * 123.46474 * 179.97438 * 3 2 1 8 8 C 1.41719 * 125.47584 * 0.02678 * 7 3 2 9 9 O 1.21770 * 120.00272 * 359.71464 * 8 7 3 10 10 N 1.34781 * 119.99931 * 179.71553 * 8 7 3 11 11 C 1.46503 * 120.00049 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46941 * 179.97438 * 11 10 8 13 13 H 1.09002 * 108.45330 * 57.87787 * 12 11 10 14 14 C 1.47486 * 108.54728 * 175.84817 * 12 11 10 15 15 N 1.50125 * 106.48513 * 178.01130 * 14 12 11 16 16 C 1.36929 * 120.63754 * 111.36996 * 15 14 12 17 17 H 1.08003 * 119.99796 * 155.82519 * 16 15 14 18 18 C 1.38811 * 119.99950 * 335.82695 * 16 15 14 19 19 N 1.31617 * 120.00151 * 340.44346 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 160.43967 * 18 16 15 21 21 H 1.48502 * 109.47538 * 270.00151 * 20 18 16 22 22 H 1.48502 * 109.47236 * 30.00308 * 20 18 16 23 23 H 1.48503 * 109.47187 * 150.00303 * 20 18 16 24 24 C 1.43425 * 118.72616 * 291.09709 * 15 14 12 25 25 C 1.55336 * 116.23732 * 89.62503 * 24 15 14 26 26 C 1.55181 * 108.87527 * 319.46297 * 25 24 15 27 27 O 1.39639 * 110.56783 * 322.14149 * 26 25 24 28 28 H 1.09003 * 109.47295 * 299.99940 * 1 2 3 29 29 H 1.08999 * 109.46943 * 59.99749 * 1 2 3 30 30 H 1.09003 * 109.46761 * 179.97438 * 1 2 3 31 31 H 1.08000 * 122.45576 * 0.02562 * 4 3 2 32 32 H 1.08008 * 124.42403 * 179.74556 * 5 4 3 33 33 H 0.97000 * 119.99838 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.47027 * 59.99740 * 11 10 8 35 35 H 1.09002 * 109.46850 * 299.99673 * 11 10 8 36 36 H 1.08995 * 110.11648 * 58.80095 * 14 12 11 37 37 H 1.08997 * 110.15233 * 297.23722 * 14 12 11 38 38 H 0.97003 * 120.00213 * 179.97438 * 19 18 16 39 39 H 1.08997 * 108.12625 * 211.38277 * 24 15 14 40 40 H 1.08999 * 108.12979 * 328.08579 * 24 15 14 41 41 H 1.08998 * 109.56591 * 79.28523 * 25 24 15 42 42 H 1.09002 * 109.56988 * 199.64262 * 25 24 15 43 43 H 1.09004 * 109.25672 * 82.42923 * 26 25 24 44 44 H 1.09006 * 109.25717 * 201.89719 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3652 2.4109 0.0040 5 6 2.1389 3.5001 -0.0023 6 16 3.7922 3.0805 -0.0070 7 6 3.4094 1.3646 0.0005 8 6 4.3567 0.3105 0.0006 9 8 3.9794 -0.8472 0.0054 10 7 5.6753 0.5895 -0.0047 11 6 6.6546 -0.5002 -0.0041 12 6 8.0683 0.0848 -0.0114 13 1 8.1801 0.7280 0.8615 14 6 9.0353 -1.0241 0.0906 15 7 10.4016 -0.4049 0.0296 16 6 11.2168 -0.4036 1.1298 17 1 12.2875 -0.3308 1.0083 18 6 10.6672 -0.4960 2.4011 19 7 9.3987 -0.2018 2.5926 20 14 11.7279 -1.0380 3.8401 21 1 11.6623 -2.5154 3.9746 22 1 13.1341 -0.6245 3.6018 23 1 11.2304 -0.4048 5.0878 24 6 10.8388 0.1801 -1.2047 25 6 10.5025 1.6827 -1.4097 26 6 9.0669 1.9519 -0.8854 27 8 8.2263 0.8774 -1.1835 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2866 2.4660 0.0079 32 1 1.7662 4.5138 -0.0043 33 1 5.9759 1.5117 -0.0082 34 1 6.5123 -1.1170 -0.8915 35 1 6.5182 -1.1107 0.8886 36 1 8.9021 -1.7154 -0.7415 37 1 8.9062 -1.5491 1.0370 38 1 9.0145 -0.2667 3.4809 39 1 11.9203 0.0625 -1.2714 40 1 10.3879 -0.3800 -2.0240 41 1 11.2143 2.2949 -0.8559 42 1 10.5557 1.9274 -2.4705 43 1 9.0995 2.0941 0.1948 44 1 8.6760 2.8546 -1.3551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073863675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:49 Heat of formation + Delta-G solvation = -64.386788 kcal Electronic energy + Delta-G solvation = -28068.416123 eV Core-core repulsion = 24113.748526 eV Total energy + Delta-G solvation = -3954.667597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39645 -40.73598 -39.83775 -36.96360 -36.78586 -35.91369 -33.86519 -33.02838 -31.38438 -30.16218 -28.20123 -27.06120 -26.97233 -25.58913 -24.22468 -22.44243 -22.28348 -21.29775 -20.63017 -19.77257 -18.90636 -18.02148 -17.64835 -17.21834 -16.93933 -16.69481 -16.50441 -16.26370 -15.94996 -15.86875 -15.52971 -15.22253 -14.82683 -14.72458 -14.43368 -14.23551 -14.03503 -13.66366 -13.53686 -13.40487 -13.27669 -12.94718 -12.63586 -12.54909 -12.47737 -12.25860 -12.02355 -11.92505 -11.91393 -11.76085 -11.39160 -11.19176 -11.07902 -10.55562 -10.27604 -10.20006 -9.76432 -9.08467 -8.71819 -7.88262 -5.29108 -0.50919 0.43651 0.84544 1.34269 1.48217 1.52336 1.58224 2.26595 2.27747 2.52191 2.53267 3.11397 3.28584 3.51166 3.71623 4.04177 4.14716 4.25395 4.29949 4.31454 4.38755 4.38993 4.41522 4.56800 4.63316 4.70848 4.73864 4.76799 4.80215 4.86495 4.95481 5.07660 5.12399 5.19157 5.19802 5.34821 5.39071 5.42762 5.50710 5.69073 6.27801 6.36864 6.51601 6.55087 7.11088 7.22657 7.83793 8.37206 9.17686 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.003048 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.859988 B = 9185.131882 C = 9773.226734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.310 6.310 3 C 0.184 3.816 4 C -0.222 4.222 5 C -0.170 4.170 6 S 0.252 5.748 7 C -0.378 4.378 8 C 0.586 3.414 9 O -0.580 6.580 10 N -0.711 5.711 11 C 0.135 3.865 12 C 0.083 3.917 13 H 0.085 0.915 14 C 0.146 3.854 15 N -0.602 5.602 16 C -0.262 4.262 17 H 0.065 0.935 18 C -0.037 4.037 19 N -0.918 5.918 20 Si 0.959 3.041 21 H -0.292 1.292 22 H -0.274 1.274 23 H -0.295 1.295 24 C 0.153 3.847 25 C -0.164 4.164 26 C 0.066 3.934 27 O -0.368 6.368 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.183 0.817 32 H 0.217 0.783 33 H 0.402 0.598 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.078 0.922 38 H 0.250 0.750 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 11.554 -6.267 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.222 6.222 3 C 0.122 3.878 4 C -0.255 4.255 5 C -0.309 4.309 6 S 0.517 5.483 7 C -0.497 4.497 8 C 0.377 3.623 9 O -0.463 6.463 10 N -0.362 5.362 11 C 0.010 3.990 12 C 0.024 3.976 13 H 0.102 0.898 14 C 0.021 3.979 15 N -0.323 5.323 16 C -0.392 4.392 17 H 0.082 0.918 18 C -0.233 4.233 19 N -0.563 5.563 20 Si 0.789 3.211 21 H -0.219 1.219 22 H -0.199 1.199 23 H -0.222 1.222 24 C 0.025 3.975 25 C -0.205 4.205 26 C -0.012 4.012 27 O -0.287 6.287 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.200 0.800 32 H 0.234 0.766 33 H 0.238 0.762 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.485 11.292 -6.314 20.955 hybrid contribution -0.584 -0.902 1.214 1.621 sum -17.069 10.390 -5.100 20.623 Atomic orbital electron populations 1.23500 0.75866 1.05649 1.03075 1.86303 1.23718 1.25408 1.86802 1.18766 0.90184 0.86550 0.92279 1.20244 1.03641 0.89419 1.12170 1.25605 0.97804 1.05370 1.02075 1.83062 1.04836 0.92409 1.68035 1.22777 0.95629 1.00009 1.31304 1.16032 0.82083 0.88076 0.76157 1.90798 1.80314 1.22268 1.52928 1.45694 1.05067 1.10255 1.75206 1.21374 0.87224 0.89513 1.00873 1.21848 0.91869 0.95996 0.87937 0.89767 1.20766 0.83995 0.93606 0.99538 1.44225 1.15289 1.63774 1.09027 1.19416 0.89588 1.45057 0.85166 0.91754 1.25483 0.97461 1.01262 0.99123 1.70011 1.13465 1.51244 1.21612 0.85394 0.78762 0.77651 0.79296 1.21886 1.19945 1.22211 1.20501 0.96903 0.92363 0.87705 1.23488 0.96829 0.99322 1.00814 1.22440 0.90415 0.89190 0.99152 1.87518 1.66913 1.39612 1.34614 0.90707 0.90563 0.87181 0.80025 0.76583 0.76218 0.92462 0.92145 0.95740 0.90363 0.94026 0.94928 0.94786 0.92584 0.90251 0.94485 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.94 113.37 1.13 1.33 16 2 O -0.31 -8.97 9.36 -74.38 -0.70 -9.67 16 3 C 0.18 4.91 6.70 21.99 0.15 5.06 16 4 C -0.22 -3.63 9.17 21.17 0.19 -3.43 16 5 C -0.17 -2.24 10.90 66.77 0.73 -1.51 16 6 S 0.25 4.97 22.00 -56.49 -1.24 3.72 16 7 C -0.38 -11.53 6.28 22.90 0.14 -11.38 16 8 C 0.59 22.82 7.59 85.10 0.65 23.46 16 9 O -0.58 -27.11 15.84 12.18 0.19 -26.91 16 10 N -0.71 -26.44 5.42 -472.02 -2.56 -28.99 16 11 C 0.14 5.59 5.24 86.38 0.45 6.04 16 12 C 0.08 3.55 1.95 28.87 0.06 3.60 16 13 H 0.08 4.06 5.27 -2.39 -0.01 4.05 16 14 C 0.15 6.94 4.75 83.95 0.40 7.34 16 15 N -0.60 -29.51 2.60 -705.04 -1.84 -31.35 16 16 C -0.26 -13.92 9.62 84.03 0.81 -13.12 16 17 H 0.06 3.41 7.88 -2.91 -0.02 3.38 16 18 C -0.04 -1.96 4.91 84.86 0.42 -1.54 16 19 N -0.92 -49.69 9.59 21.65 0.21 -49.48 16 20 Si 0.96 43.83 29.60 68.60 2.03 45.86 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 24 C 0.15 6.44 5.33 87.75 0.47 6.91 16 25 C -0.16 -5.84 6.75 32.15 0.22 -5.63 16 26 C 0.07 2.38 6.38 72.73 0.46 2.85 16 27 O -0.37 -14.56 9.54 -137.18 -1.31 -15.87 16 28 H 0.07 0.83 7.87 -2.39 -0.02 0.81 16 29 H 0.08 0.82 7.89 -2.39 -0.02 0.80 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.18 1.65 6.99 -2.91 -0.02 1.63 16 32 H 0.22 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.40 13.34 7.30 -92.71 -0.68 12.66 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 4.14 6.02 -2.39 -0.01 4.12 16 38 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 39 H 0.03 1.35 7.96 -2.39 -0.02 1.33 16 40 H 0.03 1.39 7.97 -2.39 -0.02 1.37 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.04 1.55 6.66 -2.38 -0.02 1.54 16 44 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -71.40 365.95 1.41 -69.99 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.35 Total: 22.73 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 6.27 Total: 19.98 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.19 Total: -109.82 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -1.81 Total: -52.46 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -1.24 Total: 3.72 kcal Total: -71.40 1.41 -69.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073863675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.608 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds