Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99588 * 2 1 4 4 C 1.50701 * 109.46987 * 180.02562 * 3 2 1 5 5 C 1.37474 * 123.34744 * 0.02562 * 4 3 2 6 6 C 1.33821 * 115.10052 * 179.97438 * 5 4 3 7 7 S 1.70619 * 110.95335 * 359.73060 * 6 5 4 8 8 C 1.36647 * 123.35798 * 180.02562 * 4 3 2 9 9 C 1.46585 * 125.45114 * 0.02562 * 8 4 3 10 10 O 1.21704 * 120.00398 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99706 * 180.02562 * 9 8 4 12 12 C 1.46495 * 120.00234 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.91616 * 31.09979 * 12 11 9 14 14 C 1.54918 * 111.00632 * 267.20315 * 12 11 9 15 15 N 1.47425 * 104.82827 * 204.91527 * 14 12 11 16 16 C 1.36938 * 125.64303 * 204.16846 * 15 14 12 17 17 H 1.08000 * 120.00310 * 359.97292 * 16 15 14 18 18 C 1.38811 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00230 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00130 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46965 * 60.00110 * 20 18 16 22 22 H 1.48496 * 109.47162 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47016 * 300.00689 * 20 18 16 24 24 C 1.47015 * 108.70882 * 24.12597 * 15 14 12 25 25 C 1.54325 * 107.27065 * 358.94051 * 24 15 14 26 26 H 1.08993 * 110.72326 * 96.17079 * 25 24 15 27 27 O 1.42901 * 110.72114 * 219.44659 * 25 24 15 28 28 C 1.42901 * 113.99953 * 263.52022 * 27 25 24 29 29 H 1.09010 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46932 * 299.99472 * 1 2 3 31 31 H 1.08997 * 109.47656 * 59.99928 * 1 2 3 32 32 H 1.08995 * 109.47221 * 60.00583 * 3 2 1 33 33 H 1.08998 * 109.47607 * 299.99938 * 3 2 1 34 34 H 1.07998 * 122.45537 * 0.02562 * 5 4 3 35 35 H 1.07998 * 124.52408 * 180.02562 * 6 5 4 36 36 H 0.97000 * 120.00256 * 0.02562 * 11 9 8 37 37 H 1.08999 * 110.35942 * 323.74720 * 14 12 11 38 38 H 1.08996 * 110.36556 * 86.07552 * 14 12 11 39 39 H 0.96995 * 120.00366 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.88350 * 239.52260 * 24 15 14 41 41 H 1.08997 * 110.01690 * 118.42776 * 24 15 14 42 42 H 1.08996 * 109.47227 * 300.00323 * 28 27 25 43 43 H 1.09002 * 109.46957 * 59.99904 * 28 27 25 44 44 H 1.09003 * 109.46811 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1752 -0.0179 -0.0016 6 6 5.5106 0.0689 -0.0026 7 16 6.0160 1.6985 -0.0098 8 6 4.3516 2.2650 -0.0003 9 6 3.9312 3.6693 0.0013 10 8 2.7470 3.9501 0.0029 11 7 4.8562 4.6496 0.0010 12 6 4.4362 6.0530 0.0031 13 1 3.4902 6.1753 0.5306 14 6 4.3424 6.6069 -1.4406 15 7 4.5273 8.0626 -1.2991 16 6 4.0801 9.0130 -2.1778 17 1 3.5409 8.7167 -3.0654 18 6 4.3200 10.3571 -1.9276 19 7 4.9776 10.7182 -0.8462 20 14 3.7095 11.6536 -3.1259 21 1 2.2311 11.5677 -3.2373 22 1 4.0917 13.0016 -2.6339 23 1 4.3206 11.4221 -4.4594 24 6 5.2701 8.3251 -0.0579 25 6 5.5353 6.9616 0.6145 26 1 6.5280 6.5917 0.3582 27 8 5.3806 7.0582 2.0319 28 6 6.6070 7.2563 2.7382 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.6562 -0.9650 -0.0024 35 1 6.1791 -0.7792 -0.0039 36 1 5.8000 4.4258 -0.0006 37 1 5.1317 6.1829 -2.0614 38 1 3.3638 6.3884 -1.8679 39 1 5.1455 11.6574 -0.6716 40 1 4.6758 8.9554 0.6037 41 1 6.2162 8.8161 -0.2860 42 1 7.2774 6.4191 2.5441 43 1 7.0746 8.1817 2.4018 44 1 6.4043 7.3197 3.8073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082325826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = -78.025166 kcal Electronic energy + Delta-G solvation = -27474.034963 eV Core-core repulsion = 23518.775961 eV Total energy + Delta-G solvation = -3955.259002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28167 -40.07090 -39.19474 -37.86048 -37.49905 -35.69031 -33.75992 -31.67657 -30.66242 -29.52448 -28.47317 -27.52381 -26.69837 -25.92180 -24.53295 -22.94930 -22.22509 -21.81987 -20.12102 -19.43178 -18.95989 -17.93087 -17.54685 -17.20069 -16.99671 -16.75624 -16.51217 -16.28386 -16.04816 -15.82665 -15.66022 -15.13447 -15.02901 -14.88192 -14.56575 -14.23657 -14.04118 -13.62994 -13.39412 -13.24266 -13.17512 -13.06329 -13.00931 -12.72771 -12.58984 -12.33623 -12.29266 -12.12413 -11.96527 -11.86999 -11.67464 -11.19005 -10.84576 -10.77156 -10.65940 -10.24450 -9.78656 -9.40314 -8.97820 -7.87697 -5.26120 -0.56015 0.44761 0.88987 1.36412 1.45847 1.49672 1.55699 1.89541 2.04860 2.46414 2.73067 2.75173 3.31635 3.48711 3.64453 3.85657 3.86925 3.89434 4.07549 4.22094 4.33808 4.35796 4.36802 4.41354 4.48417 4.55826 4.57645 4.58637 4.64359 4.80184 4.82444 4.87144 4.91487 5.01668 5.22336 5.26889 5.30245 5.35638 5.41303 5.65218 6.10764 6.12671 6.29634 6.35864 7.02372 7.04946 7.68837 8.31382 9.21609 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.002920 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.031733 B = 9585.454203 C =10648.541182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.127 3.873 4 C -0.030 4.030 5 C -0.145 4.145 6 C -0.211 4.211 7 S 0.259 5.741 8 C -0.302 4.302 9 C 0.589 3.411 10 O -0.566 6.566 11 N -0.698 5.698 12 C 0.151 3.849 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.620 5.620 16 C -0.249 4.249 17 H 0.083 0.917 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.982 3.018 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.273 1.273 24 C 0.176 3.824 25 C 0.076 3.924 26 H 0.097 0.903 27 O -0.398 6.398 28 C 0.025 3.975 29 H 0.110 0.890 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.160 0.840 35 H 0.207 0.793 36 H 0.410 0.590 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.249 0.751 40 H 0.018 0.982 41 H 0.024 0.976 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 -24.442 4.708 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.049 3.951 4 C -0.047 4.047 5 C -0.175 4.175 6 C -0.349 4.349 7 S 0.528 5.472 8 C -0.422 4.422 9 C 0.377 3.623 10 O -0.447 6.447 11 N -0.349 5.349 12 C 0.045 3.955 13 H 0.099 0.901 14 C 0.005 3.995 15 N -0.348 5.348 16 C -0.378 4.378 17 H 0.101 0.899 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.199 1.199 24 C 0.050 3.950 25 C 0.016 3.984 26 H 0.115 0.885 27 O -0.316 6.316 28 C -0.071 4.071 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.178 0.822 35 H 0.223 0.777 36 H 0.247 0.753 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.963 -23.484 4.786 24.475 hybrid contribution -1.484 0.705 -0.570 1.739 sum 3.479 -22.779 4.216 23.426 Atomic orbital electron populations 1.22950 0.79166 1.04243 1.00657 1.87753 1.21545 1.27045 1.95645 1.20834 0.88663 0.84445 1.01137 1.19388 0.95470 0.92338 0.97484 1.19862 0.93505 0.98806 1.05354 1.25762 0.99865 1.03189 1.06053 1.82765 1.00919 0.97127 1.66411 1.24187 1.00305 0.95372 1.22320 1.17285 0.85379 0.84187 0.75454 1.90801 1.18119 1.84021 1.51743 1.45512 1.09742 1.04757 1.74893 1.21905 0.98277 0.79227 0.96136 0.90141 1.21923 0.99032 0.84225 0.94358 1.44494 1.65460 1.00929 1.23942 1.19418 1.29985 0.86737 1.01659 0.89887 1.25673 1.01006 0.98959 0.99768 1.70144 1.46061 1.15592 1.27869 0.85114 0.78009 0.77726 0.78227 1.20570 1.21776 1.19918 1.21283 0.94991 0.92039 0.86717 1.23512 0.98172 0.95313 0.81363 0.88521 1.87898 1.32833 1.93411 1.17472 1.23010 0.85973 1.00478 0.97601 0.87215 0.93629 0.93693 0.92087 0.92162 0.82243 0.77650 0.75342 0.93913 0.94422 0.94153 0.96329 0.95743 0.91652 0.94457 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -9.08 9.62 -148.98 -1.43 -10.51 16 3 C 0.13 3.33 4.91 71.24 0.35 3.68 16 4 C -0.03 -0.73 5.90 -20.42 -0.12 -0.85 16 5 C -0.15 -2.69 9.48 21.08 0.20 -2.49 16 6 C -0.21 -2.82 10.92 66.82 0.73 -2.09 16 7 S 0.26 4.01 22.16 -56.49 -1.25 2.76 16 8 C -0.30 -7.54 6.45 24.08 0.16 -7.38 16 9 C 0.59 18.79 7.78 86.42 0.67 19.46 16 10 O -0.57 -22.32 14.51 -4.36 -0.06 -22.38 16 11 N -0.70 -20.81 5.19 -439.99 -2.28 -23.09 16 12 C 0.15 5.76 3.15 46.39 0.15 5.91 16 13 H 0.08 3.59 7.54 -2.39 -0.02 3.58 16 14 C 0.13 5.69 6.93 86.86 0.60 6.30 16 15 N -0.62 -32.81 3.39 -691.99 -2.35 -35.16 16 16 C -0.25 -14.31 10.28 84.03 0.86 -13.45 16 17 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 18 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 19 N -0.95 -57.20 10.31 21.65 0.22 -56.98 16 20 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 C 0.18 8.80 5.15 86.73 0.45 9.24 16 25 C 0.08 2.84 3.09 31.78 0.10 2.94 16 26 H 0.10 2.98 7.69 -2.39 -0.02 2.96 16 27 O -0.40 -14.49 10.43 -148.98 -1.55 -16.05 16 28 C 0.03 0.66 10.85 113.37 1.23 1.89 16 29 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.06 1.74 7.83 -2.39 -0.02 1.72 16 33 H 0.06 1.73 7.84 -2.39 -0.02 1.72 16 34 H 0.16 2.65 7.47 -2.91 -0.02 2.63 16 35 H 0.21 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.41 9.39 7.68 -92.71 -0.71 8.68 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 39 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.02 1.08 7.29 -2.39 -0.02 1.06 16 41 H 0.02 1.32 7.51 -2.39 -0.02 1.30 16 42 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 43 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -74.99 378.03 0.71 -74.28 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.31 Total: 17.08 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 7.09 Total: 21.82 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -4.41 Total: -115.24 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -3.05 Total: -48.94 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.25 Total: 2.76 kcal Total: -74.99 0.71 -74.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082325826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.740 kcal (2) G-P(sol) polarization free energy of solvation -74.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds