Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00063 * 2 1 4 4 C 1.50699 * 109.47090 * 179.97438 * 3 2 1 5 5 C 1.37476 * 123.35241 * 0.02562 * 4 3 2 6 6 C 1.33818 * 115.09763 * 180.02562 * 5 4 3 7 7 S 1.70614 * 110.95807 * 0.02562 * 6 5 4 8 8 C 1.36651 * 123.35079 * 180.02562 * 4 3 2 9 9 C 1.46585 * 125.45440 * 0.03329 * 8 4 3 10 10 O 1.21697 * 120.00141 * 359.97438 * 9 8 4 11 11 N 1.34775 * 119.99629 * 179.97438 * 9 8 4 12 12 C 1.46497 * 120.00107 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.45854 * 35.00086 * 12 11 9 14 14 C 1.53038 * 109.46505 * 275.03246 * 12 11 9 15 15 C 1.53189 * 109.31634 * 178.61297 * 14 12 11 16 16 N 1.46927 * 108.77417 * 54.63295 * 15 14 12 17 17 C 1.36942 * 120.63040 * 126.37308 * 16 15 14 18 18 H 1.08001 * 119.99564 * 331.82453 * 17 16 15 19 19 C 1.38807 * 119.99735 * 151.82657 * 17 16 15 20 20 N 1.31611 * 120.00437 * 343.08918 * 19 17 16 21 21 Si 1.86810 * 119.99757 * 163.08968 * 19 17 16 22 22 H 1.48505 * 109.46801 * 59.99570 * 21 19 17 23 23 H 1.48496 * 109.47038 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46818 * 300.00354 * 21 19 17 25 25 C 1.46927 * 118.73796 * 306.38893 * 16 15 14 26 26 C 1.53042 * 109.46193 * 154.97165 * 12 11 9 27 27 H 1.09006 * 109.49468 * 61.43985 * 26 12 11 28 28 O 1.42899 * 109.49856 * 301.34381 * 26 12 11 29 29 H 1.08999 * 109.47442 * 300.00221 * 1 2 3 30 30 H 1.08996 * 109.47409 * 60.00415 * 1 2 3 31 31 H 1.09007 * 109.46803 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46942 * 60.00083 * 3 2 1 33 33 H 1.08997 * 109.46462 * 300.00173 * 3 2 1 34 34 H 1.07999 * 122.44610 * 0.27390 * 5 4 3 35 35 H 1.08001 * 124.51526 * 179.97438 * 6 5 4 36 36 H 0.97000 * 120.00366 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.49321 * 298.56411 * 14 12 11 38 38 H 1.09000 * 109.49795 * 58.62024 * 14 12 11 39 39 H 1.08999 * 109.58883 * 174.42043 * 15 14 12 40 40 H 1.09000 * 109.58645 * 294.84432 * 15 14 12 41 41 H 0.97002 * 120.00161 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.58311 * 173.39850 * 25 16 15 43 43 H 1.08993 * 109.58627 * 293.82118 * 25 16 15 44 44 H 0.96697 * 114.00229 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1753 -0.0180 0.0006 6 6 5.5107 0.0689 0.0018 7 16 6.0161 1.6985 0.0037 8 6 4.3516 2.2650 0.0013 9 6 3.9312 3.6693 0.0022 10 8 2.7471 3.9500 0.0019 11 7 4.8562 4.6495 0.0033 12 6 4.4362 6.0530 0.0036 13 1 3.5251 6.1593 0.5925 14 6 4.1698 6.5059 -1.4338 15 6 3.6976 7.9632 -1.4266 16 7 4.6891 8.7780 -0.7111 17 6 5.2338 9.8889 -1.2981 18 1 5.3208 9.9437 -2.3732 19 6 5.6739 10.9443 -0.5113 20 7 5.2806 11.0403 0.7410 21 14 6.8245 12.2286 -1.2300 22 1 6.1669 12.8916 -2.3847 23 1 7.1437 13.2428 -0.1933 24 1 8.0771 11.5724 -1.6836 25 6 5.0854 8.3780 0.6460 26 6 5.5421 6.9161 0.6153 27 1 6.4463 6.8298 0.0125 28 8 5.8118 6.4728 1.9467 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8463 -0.8900 34 1 3.6562 -0.9650 -0.0042 35 1 6.1791 -0.7793 0.0023 36 1 5.8000 4.4258 0.0031 37 1 5.0869 6.4235 -2.0170 38 1 3.3990 5.8754 -1.8769 39 1 3.6016 8.3213 -2.4516 40 1 2.7343 8.0327 -0.9213 41 1 5.5879 11.7781 1.2907 42 1 5.9049 9.0098 0.9885 43 1 4.2353 8.4814 1.3203 44 1 6.5039 6.9765 2.3965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090724557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = -73.463649 kcal Electronic energy + Delta-G solvation = -27598.589863 eV Core-core repulsion = 23643.528664 eV Total energy + Delta-G solvation = -3955.061200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.04152 -38.82860 -37.76429 -36.94978 -35.29138 -34.38512 -32.26640 -30.78155 -29.65714 -28.93557 -28.03670 -25.96302 -24.97755 -23.67654 -22.60053 -21.99599 -20.89238 -19.78895 -18.77016 -18.39593 -17.00703 -16.64779 -16.50219 -16.08870 -16.02894 -15.58508 -15.40940 -14.88494 -14.74877 -14.29700 -13.94291 -13.77054 -13.57339 -13.47940 -13.19596 -12.76770 -12.53979 -12.36021 -12.24484 -12.22964 -11.98853 -11.70254 -11.50721 -11.23407 -11.12595 -10.83737 -10.82186 -10.44992 -10.24669 -10.05090 -9.99807 -9.96635 -9.59409 -9.38867 -9.05970 -8.73797 -8.60595 -8.54672 -6.80091 -5.89097 -3.33187 0.35766 1.30095 1.69966 2.25866 3.22855 3.27269 3.33016 3.38743 3.39470 3.56618 4.39118 4.54983 4.65596 4.83894 5.04355 5.15504 5.16106 5.22313 5.27860 5.36530 5.42598 5.43096 5.45195 5.45619 5.56703 5.80550 5.88379 5.97306 6.03181 6.07218 6.11362 6.17555 6.40667 6.43601 6.67940 6.77503 6.88390 6.96374 7.09372 7.42601 7.62491 7.70423 8.07433 8.28223 8.34443 9.09171 9.71823 10.28160 11.19387 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.002641 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.344087 B =10599.177685 C =11309.701731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.124 3.876 4 C -0.027 4.027 5 C -0.127 4.127 6 C -0.237 4.237 7 S 0.206 5.794 8 C -0.261 4.261 9 C 0.588 3.412 10 O -0.533 6.533 11 N -0.709 5.709 12 C 0.163 3.837 13 H 0.091 0.909 14 C -0.140 4.140 15 C 0.145 3.855 16 N -0.589 5.589 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.149 3.851 26 C 0.071 3.929 27 H 0.052 0.948 28 O -0.573 6.573 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.394 0.606 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.024 0.976 41 H 0.256 0.744 42 H 0.094 0.906 43 H 0.030 0.970 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -21.828 -0.560 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C 0.047 3.953 4 C -0.043 4.043 5 C -0.158 4.158 6 C -0.374 4.374 7 S 0.474 5.526 8 C -0.382 4.382 9 C 0.373 3.627 10 O -0.412 6.412 11 N -0.357 5.357 12 C 0.060 3.940 13 H 0.109 0.891 14 C -0.180 4.180 15 C 0.019 3.981 16 N -0.313 5.313 17 C -0.387 4.387 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.207 1.207 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.022 3.978 26 C 0.010 3.990 27 H 0.070 0.930 28 O -0.377 6.377 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.187 0.813 36 H 0.228 0.772 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.048 0.952 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.144 -21.335 -0.577 21.344 hybrid contribution 0.027 0.352 -0.145 0.382 sum 0.172 -20.983 -0.723 20.996 Atomic orbital electron populations 1.22723 0.80538 1.02587 1.00429 1.87773 1.20010 1.27985 1.95666 1.21007 0.87784 0.84036 1.02522 1.19197 0.95633 0.91393 0.98075 1.19811 0.92727 0.99373 1.03921 1.25277 1.00067 1.02347 1.09733 1.83043 1.04490 0.97204 1.67882 1.24466 0.97414 0.97311 1.18999 1.16886 0.86017 0.83036 0.76715 1.90798 1.16464 1.83227 1.50734 1.45980 1.08924 1.06680 1.74155 1.21050 0.98438 0.77433 0.97080 0.89132 1.22435 1.01479 0.99317 0.94810 1.20937 0.91851 0.88392 0.96954 1.44003 1.45090 1.28043 1.14152 1.19161 1.34612 0.93221 0.91663 0.91405 1.25088 1.00824 0.97001 0.96623 1.70010 1.44848 1.32128 1.07603 0.86343 0.81118 0.80992 0.78163 1.20750 1.21572 1.20969 1.21413 1.00364 0.88888 0.87135 1.22995 0.96378 0.97184 0.82412 0.92993 1.86417 1.61592 1.61227 1.28493 0.93840 0.93840 0.89630 0.90634 0.90641 0.83141 0.81349 0.77189 0.91944 0.91715 0.92045 0.95784 0.93397 0.88788 0.95165 0.77678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.40 -4.56 9.62 -35.23 -0.34 -4.90 16 3 C 0.12 1.59 4.91 36.01 0.18 1.76 16 4 C -0.03 -0.35 5.90 -105.47 -0.62 -0.97 16 5 C -0.13 -1.37 9.49 -41.41 -0.39 -1.76 16 6 C -0.24 -2.16 10.92 29.18 0.32 -1.84 16 7 S 0.21 2.06 22.16 -107.50 -2.38 -0.32 16 8 C -0.26 -3.51 6.45 -36.79 -0.24 -3.75 16 9 C 0.59 9.45 7.74 -12.90 -0.10 9.35 16 10 O -0.53 -9.93 14.53 5.19 0.08 -9.86 16 11 N -0.71 -11.01 4.91 -55.10 -0.27 -11.28 16 12 C 0.16 2.94 2.12 -67.89 -0.14 2.80 16 13 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 14 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 15 C 0.15 3.03 6.52 -3.71 -0.02 3.00 16 16 N -0.59 -14.24 2.99 -172.32 -0.52 -14.75 16 17 C -0.26 -6.79 9.58 -15.06 -0.14 -6.94 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.10 4.92 -17.44 -0.09 0.01 16 20 N -0.90 -25.27 11.20 55.49 0.62 -24.65 16 21 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C 0.15 3.40 4.93 -3.71 -0.02 3.38 16 26 C 0.07 1.31 3.14 -26.61 -0.08 1.23 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.57 -9.68 13.16 -35.23 -0.46 -10.15 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.08 1.02 7.83 -51.93 -0.41 0.62 16 33 H 0.08 1.00 7.84 -51.93 -0.41 0.60 16 34 H 0.15 1.47 7.47 -52.49 -0.39 1.08 16 35 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.39 5.35 7.72 -40.82 -0.31 5.03 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.38 5.06 9.08 45.56 0.41 5.47 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -31.26 373.65 -8.65 -39.91 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.58 Total: 9.46 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.39 Total: 5.01 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.17 Total: -50.68 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.73 Total: -24.90 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.38 Total: -0.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.26 -8.65 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090724557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.556 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds