Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00063 * 2 1 4 4 C 1.50699 * 109.47090 * 179.97438 * 3 2 1 5 5 C 1.37476 * 123.35241 * 0.02562 * 4 3 2 6 6 C 1.33818 * 115.09763 * 180.02562 * 5 4 3 7 7 S 1.70614 * 110.95807 * 0.02562 * 6 5 4 8 8 C 1.36651 * 123.35079 * 180.02562 * 4 3 2 9 9 C 1.46585 * 125.45440 * 0.03329 * 8 4 3 10 10 O 1.21697 * 120.00141 * 359.97438 * 9 8 4 11 11 N 1.34775 * 119.99629 * 179.97438 * 9 8 4 12 12 C 1.46497 * 120.00107 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.45854 * 35.00086 * 12 11 9 14 14 C 1.53038 * 109.46505 * 275.03246 * 12 11 9 15 15 C 1.53189 * 109.31634 * 178.61297 * 14 12 11 16 16 N 1.46927 * 108.77417 * 54.63295 * 15 14 12 17 17 C 1.36942 * 120.63040 * 126.37308 * 16 15 14 18 18 H 1.08001 * 119.99564 * 331.82453 * 17 16 15 19 19 C 1.38807 * 119.99735 * 151.82657 * 17 16 15 20 20 N 1.31611 * 120.00437 * 343.08918 * 19 17 16 21 21 Si 1.86810 * 119.99757 * 163.08968 * 19 17 16 22 22 H 1.48505 * 109.46801 * 59.99570 * 21 19 17 23 23 H 1.48496 * 109.47038 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46818 * 300.00354 * 21 19 17 25 25 C 1.46927 * 118.73796 * 306.38893 * 16 15 14 26 26 C 1.53042 * 109.46193 * 154.97165 * 12 11 9 27 27 H 1.09006 * 109.49468 * 61.43985 * 26 12 11 28 28 O 1.42899 * 109.49856 * 301.34381 * 26 12 11 29 29 H 1.08999 * 109.47442 * 300.00221 * 1 2 3 30 30 H 1.08996 * 109.47409 * 60.00415 * 1 2 3 31 31 H 1.09007 * 109.46803 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46942 * 60.00083 * 3 2 1 33 33 H 1.08997 * 109.46462 * 300.00173 * 3 2 1 34 34 H 1.07999 * 122.44610 * 0.27390 * 5 4 3 35 35 H 1.08001 * 124.51526 * 179.97438 * 6 5 4 36 36 H 0.97000 * 120.00366 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.49321 * 298.56411 * 14 12 11 38 38 H 1.09000 * 109.49795 * 58.62024 * 14 12 11 39 39 H 1.08999 * 109.58883 * 174.42043 * 15 14 12 40 40 H 1.09000 * 109.58645 * 294.84432 * 15 14 12 41 41 H 0.97002 * 120.00161 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.58311 * 173.39850 * 25 16 15 43 43 H 1.08993 * 109.58627 * 293.82118 * 25 16 15 44 44 H 0.96697 * 114.00229 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1753 -0.0180 0.0006 6 6 5.5107 0.0689 0.0018 7 16 6.0161 1.6985 0.0037 8 6 4.3516 2.2650 0.0013 9 6 3.9312 3.6693 0.0022 10 8 2.7471 3.9500 0.0019 11 7 4.8562 4.6495 0.0033 12 6 4.4362 6.0530 0.0036 13 1 3.5251 6.1593 0.5925 14 6 4.1698 6.5059 -1.4338 15 6 3.6976 7.9632 -1.4266 16 7 4.6891 8.7780 -0.7111 17 6 5.2338 9.8889 -1.2981 18 1 5.3208 9.9437 -2.3732 19 6 5.6739 10.9443 -0.5113 20 7 5.2806 11.0403 0.7410 21 14 6.8245 12.2286 -1.2300 22 1 6.1669 12.8916 -2.3847 23 1 7.1437 13.2428 -0.1933 24 1 8.0771 11.5724 -1.6836 25 6 5.0854 8.3780 0.6460 26 6 5.5421 6.9161 0.6153 27 1 6.4463 6.8298 0.0125 28 8 5.8118 6.4728 1.9467 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8463 -0.8900 34 1 3.6562 -0.9650 -0.0042 35 1 6.1791 -0.7793 0.0023 36 1 5.8000 4.4258 0.0031 37 1 5.0869 6.4235 -2.0170 38 1 3.3990 5.8754 -1.8769 39 1 3.6016 8.3213 -2.4516 40 1 2.7343 8.0327 -0.9213 41 1 5.5879 11.7781 1.2907 42 1 5.9049 9.0098 0.9885 43 1 4.2353 8.4814 1.3203 44 1 6.5039 6.9765 2.3965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090724557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = -96.696823 kcal Electronic energy + Delta-G solvation = -27599.597329 eV Core-core repulsion = 23643.528664 eV Total energy + Delta-G solvation = -3956.068666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28804 -39.97948 -39.07592 -37.84288 -36.90581 -35.86453 -34.02541 -31.89907 -31.13123 -30.55431 -29.08060 -27.18048 -26.38416 -24.67136 -24.12635 -23.55388 -22.18927 -21.33344 -19.96413 -19.38566 -18.75833 -18.12749 -17.56788 -17.31353 -17.00210 -16.78586 -16.50509 -16.36588 -16.03977 -15.61984 -15.40327 -15.07678 -15.03287 -14.76166 -14.47754 -14.21161 -13.86157 -13.55881 -13.43499 -13.34575 -13.19370 -13.09087 -13.01744 -12.62272 -12.57486 -12.29729 -12.12208 -12.05161 -11.97141 -11.88569 -11.42711 -11.11229 -10.92989 -10.84975 -10.60309 -10.24160 -9.76694 -9.41886 -8.76742 -7.91031 -5.38724 -0.55615 0.44912 0.89134 1.36568 1.49802 1.50706 1.58272 2.01042 2.08239 2.49683 2.72701 3.09061 3.26472 3.61543 3.73775 3.85723 3.91399 4.02955 4.21639 4.28865 4.34264 4.36242 4.39483 4.43481 4.47207 4.55412 4.56874 4.65928 4.81946 4.85412 4.90983 5.00687 5.02890 5.14462 5.21610 5.28880 5.31312 5.37178 5.55371 5.63497 6.10569 6.32953 6.41276 6.81312 7.06897 7.09713 7.76868 8.30152 9.15660 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.002641 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.344087 B =10599.177685 C =11309.701731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.129 3.871 4 C -0.033 4.033 5 C -0.145 4.145 6 C -0.213 4.213 7 S 0.253 5.747 8 C -0.301 4.301 9 C 0.586 3.414 10 O -0.569 6.569 11 N -0.701 5.701 12 C 0.171 3.829 13 H 0.060 0.940 14 C -0.124 4.124 15 C 0.143 3.857 16 N -0.604 5.604 17 C -0.267 4.267 18 H 0.073 0.927 19 C -0.047 4.047 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.274 1.274 25 C 0.158 3.842 26 C 0.091 3.909 27 H 0.067 0.933 28 O -0.574 6.574 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.160 0.840 35 H 0.206 0.794 36 H 0.407 0.593 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.010 0.990 41 H 0.252 0.748 42 H 0.072 0.928 43 H -0.004 1.004 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -24.159 -1.481 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C 0.051 3.949 4 C -0.049 4.049 5 C -0.175 4.175 6 C -0.351 4.351 7 S 0.522 5.478 8 C -0.421 4.421 9 C 0.374 3.626 10 O -0.450 6.450 11 N -0.350 5.350 12 C 0.067 3.933 13 H 0.078 0.922 14 C -0.164 4.164 15 C 0.017 3.983 16 N -0.329 5.329 17 C -0.397 4.397 18 H 0.090 0.910 19 C -0.243 4.243 20 N -0.580 5.580 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.199 1.199 25 C 0.031 3.969 26 C 0.030 3.970 27 H 0.085 0.915 28 O -0.380 6.380 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.178 0.822 35 H 0.223 0.777 36 H 0.242 0.758 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.014 0.986 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.227 -23.700 -1.505 23.852 hybrid contribution -0.659 0.990 0.173 1.202 sum 1.568 -22.709 -1.332 22.802 Atomic orbital electron populations 1.22952 0.79112 1.04253 1.00694 1.87755 1.21607 1.27106 1.95649 1.20818 0.88514 0.84405 1.01139 1.19402 0.95560 0.92286 0.97681 1.19872 0.93461 0.98855 1.05295 1.25756 0.99920 1.03133 1.06279 1.82860 1.01321 0.97198 1.66468 1.24268 1.00066 0.95749 1.22008 1.17263 0.85486 0.84172 0.75714 1.90773 1.17944 1.84047 1.52266 1.45736 1.09603 1.05433 1.74271 1.20723 0.97028 0.79015 0.96563 0.92163 1.22227 1.02111 0.97075 0.94986 1.21027 0.90725 0.89892 0.96674 1.44250 1.45956 1.28175 1.14523 1.19512 1.34247 0.93874 0.92086 0.90962 1.25844 1.02356 0.99052 0.97000 1.70173 1.46174 1.32783 1.08873 0.85309 0.79358 0.78387 0.77173 1.20317 1.22161 1.19922 1.21211 0.98174 0.91459 0.86040 1.22575 0.96732 0.94181 0.83483 0.91525 1.86398 1.62511 1.61264 1.27872 0.93685 0.93525 0.87246 0.92258 0.91914 0.82206 0.77718 0.75756 0.90647 0.90992 0.91374 0.97210 0.93883 0.90967 0.98599 0.75765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -9.09 9.62 -148.98 -1.43 -10.52 16 3 C 0.13 3.37 4.91 71.24 0.35 3.72 16 4 C -0.03 -0.81 5.90 -20.42 -0.12 -0.93 16 5 C -0.14 -2.78 9.49 21.08 0.20 -2.58 16 6 C -0.21 -3.07 10.92 66.81 0.73 -2.34 16 7 S 0.25 4.29 22.16 -56.49 -1.25 3.04 16 8 C -0.30 -7.77 6.45 24.08 0.16 -7.61 16 9 C 0.59 18.82 7.74 86.42 0.67 19.49 16 10 O -0.57 -21.92 14.53 -4.34 -0.06 -21.98 16 11 N -0.70 -21.23 4.91 -446.47 -2.19 -23.42 16 12 C 0.17 6.18 2.12 45.02 0.10 6.28 16 13 H 0.06 2.57 7.58 -2.38 -0.02 2.55 16 14 C -0.12 -4.38 5.65 30.67 0.17 -4.21 16 15 C 0.14 6.02 6.52 86.36 0.56 6.59 16 16 N -0.60 -29.68 2.99 -699.11 -2.09 -31.78 16 17 C -0.27 -14.18 9.58 84.03 0.81 -13.37 16 18 H 0.07 3.70 7.89 -2.91 -0.02 3.67 16 19 C -0.05 -2.52 4.92 84.86 0.42 -2.10 16 20 N -0.93 -53.63 11.20 21.65 0.24 -53.39 16 21 Si 0.97 43.08 29.59 68.60 2.03 45.11 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 C 0.16 7.41 4.93 86.36 0.43 7.83 16 26 C 0.09 3.34 3.14 30.67 0.10 3.44 16 27 H 0.07 2.29 8.14 -2.38 -0.02 2.28 16 28 O -0.57 -18.97 13.16 -148.98 -1.96 -20.93 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.06 1.70 7.83 -2.38 -0.02 1.68 16 33 H 0.06 1.75 7.84 -2.39 -0.02 1.74 16 34 H 0.16 2.73 7.47 -2.91 -0.02 2.71 16 35 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.41 10.24 7.72 -92.71 -0.72 9.53 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.07 3.69 6.06 -2.39 -0.01 3.67 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 44 H 0.39 10.15 9.08 -74.06 -0.67 9.48 16 Total: -1.00 -69.12 373.65 -1.26 -70.38 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.35 Total: 27.62 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.81 Total: 15.88 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.04 Total: -108.59 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -3.46 Total: -53.43 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.25 Total: 3.04 kcal Total: -69.12 -1.26 -70.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090724557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.316 kcal (2) G-P(sol) polarization free energy of solvation -69.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds