Wall clock time and date at job start Sat Apr 11 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34224 * 125.69211 * 2 1 4 4 C 1.38692 * 107.32032 * 179.97438 * 3 2 1 5 5 C 1.46360 * 126.49882 * 179.97438 * 4 3 2 6 6 C 1.37883 * 119.99847 * 352.94851 * 5 4 3 7 7 C 1.43201 * 120.00324 * 6.34630 * 6 5 4 8 8 N 4.04831 * 102.18184 * 357.43473 * 2 1 3 9 9 C 1.47024 * 120.00035 * 186.34586 * 6 5 4 10 10 O 1.21662 * 119.99709 * 352.73628 * 9 6 5 11 11 N 1.34770 * 120.00309 * 172.73064 * 9 6 5 12 12 C 1.46500 * 120.00248 * 354.36344 * 11 9 6 13 13 C 1.50697 * 109.47220 * 86.02156 * 12 11 9 14 14 H 1.07993 * 120.00152 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99892 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99809 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99942 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47073 * 59.99823 * 17 15 13 19 19 H 1.48500 * 109.47001 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47000 * 299.99932 * 17 15 13 21 21 C 1.46504 * 120.00269 * 174.35718 * 11 9 6 22 22 C 1.50693 * 109.47168 * 94.68489 * 21 11 9 23 23 C 1.34524 * 125.78635 * 90.00205 * 22 21 11 24 24 C 1.41380 * 106.83935 * 180.02562 * 23 22 21 25 25 C 1.34519 * 106.84107 * 0.02562 * 24 23 22 26 26 O 1.34297 * 125.79381 * 269.69576 * 22 21 11 27 27 C 1.41671 * 106.99922 * 0.22612 * 4 3 2 28 28 N 1.30355 * 107.99227 * 359.61689 * 27 4 3 29 29 H 1.09003 * 109.46924 * 90.00173 * 1 2 3 30 30 H 1.08992 * 109.47287 * 209.99638 * 1 2 3 31 31 H 1.08994 * 109.47331 * 330.00412 * 1 2 3 32 32 H 1.07993 * 126.34031 * 359.97438 * 3 2 1 33 33 H 1.07992 * 119.99975 * 172.94371 * 5 4 3 34 34 H 1.08998 * 109.47120 * 206.02524 * 12 11 9 35 35 H 1.09005 * 109.46801 * 326.02418 * 12 11 9 36 36 H 0.97001 * 119.99373 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47095 * 214.69248 * 21 11 9 38 38 H 1.09004 * 109.46739 * 334.68932 * 21 11 9 39 39 H 1.07994 * 126.57703 * 0.03576 * 23 22 21 40 40 H 1.07998 * 126.58196 * 179.97438 * 24 23 22 41 41 H 1.08002 * 125.78744 * 180.02562 * 25 24 23 42 42 H 1.08000 * 126.00247 * 179.76883 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2480 1.0901 0.0000 4 6 3.5643 0.6530 0.0006 5 6 4.7613 1.4952 0.0003 6 6 4.6432 2.8610 -0.1473 7 6 3.3473 3.4701 -0.1637 8 7 2.3192 3.9532 -0.1771 9 6 5.8478 3.6921 -0.2877 10 8 6.9492 3.1963 -0.1420 11 7 5.7320 5.0031 -0.5780 12 6 4.4160 5.5741 -0.8751 13 6 3.7379 5.9695 0.4113 14 1 4.2373 5.8116 1.3556 15 6 2.4797 6.5328 0.3825 16 7 1.8717 6.7255 -0.7677 17 14 1.6394 7.0235 1.9770 18 1 2.4684 8.0331 2.6830 19 1 0.3054 7.6022 1.6757 20 1 1.4766 5.8258 2.8397 21 6 6.9221 5.8573 -0.5962 22 6 7.4498 5.9536 -2.0044 23 6 7.0955 6.8776 -2.9157 24 6 7.8281 6.5952 -4.0915 25 6 8.5859 5.5153 -3.8286 26 8 8.3577 5.1352 -2.5608 27 6 3.5303 -0.7633 -0.0044 28 7 2.2813 -1.1362 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5137 31 1 -0.3634 0.8900 0.5137 32 1 1.9149 2.1174 -0.0004 33 1 5.7369 1.0469 0.1157 34 1 4.5360 6.4535 -1.5078 35 1 3.8074 4.8335 -1.3940 36 1 0.9867 7.1221 -0.7879 37 1 6.6605 6.8526 -0.2372 38 1 7.6876 5.4276 0.0500 39 1 6.3874 7.6809 -2.7759 40 1 7.7867 7.1412 -5.0224 41 1 9.2669 5.0386 -4.5180 42 1 4.3886 -1.4189 -0.0088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136457799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:51 Heat of formation + Delta-G solvation = 150.857793 kcal Electronic energy + Delta-G solvation = -29176.988580 eV Core-core repulsion = 25128.503488 eV Total energy + Delta-G solvation = -4048.485092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16021 -41.16888 -39.35175 -36.45065 -35.26741 -33.82941 -32.74276 -32.53742 -32.31537 -30.57373 -29.19695 -27.31198 -27.20909 -25.52955 -23.46357 -22.88953 -21.33478 -21.26587 -20.52029 -20.18887 -19.45766 -17.49261 -17.13134 -16.53179 -16.32220 -15.94440 -15.52445 -15.23150 -14.71421 -14.62874 -14.62563 -14.36735 -13.83792 -13.43362 -13.39364 -13.08196 -12.95252 -12.64302 -12.49213 -12.45254 -12.39989 -12.36419 -12.12901 -11.98524 -11.43594 -11.30494 -10.97339 -10.83938 -10.75463 -10.31061 -9.99027 -9.89160 -9.80462 -9.55584 -9.54166 -9.14597 -8.45179 -8.17887 -7.98220 -7.62717 -6.14429 -4.18840 0.93271 1.98268 2.04270 2.43344 2.92472 3.02165 3.24074 3.28875 3.31487 3.33251 3.58219 3.72599 3.97795 4.38304 4.42223 4.52467 4.79890 4.94989 5.02387 5.04012 5.08282 5.16537 5.24688 5.29360 5.36466 5.39275 5.50407 5.63086 5.67766 5.92182 6.04257 6.13248 6.28673 6.36602 6.42113 6.43823 6.60003 6.64942 6.84986 6.87993 7.12272 7.39665 7.53533 7.61687 7.77421 8.02810 8.17730 8.58381 8.76999 8.89626 9.46663 10.92621 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008653 B = 0.004667 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.239074 B = 5998.214381 C = 8344.046654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.365 5.365 3 C 0.081 3.919 4 C -0.249 4.249 5 C 0.077 3.923 6 C -0.117 4.117 7 C 0.238 3.762 8 N -0.358 5.358 9 C 0.573 3.427 10 O -0.560 6.560 11 N -0.587 5.587 12 C 0.225 3.775 13 C -0.557 4.557 14 H 0.060 0.940 15 C 0.092 3.908 16 N -0.870 5.870 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.197 3.803 22 C -0.015 4.015 23 C -0.202 4.202 24 C -0.217 4.217 25 C -0.052 4.052 26 O -0.166 6.166 27 C 0.083 3.917 28 N -0.310 5.310 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.202 0.798 33 H 0.155 0.845 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.196 0.804 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -8.592 -2.281 9.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.142 5.142 3 C -0.069 4.069 4 C -0.260 4.260 5 C 0.051 3.949 6 C -0.124 4.124 7 C -0.073 4.073 8 N -0.036 5.036 9 C 0.362 3.638 10 O -0.442 6.442 11 N -0.316 5.316 12 C 0.105 3.895 13 C -0.595 4.595 14 H 0.078 0.922 15 C -0.114 4.114 16 N -0.506 5.506 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.074 3.926 22 C -0.067 4.067 23 C -0.222 4.222 24 C -0.236 4.236 25 C -0.120 4.120 26 O -0.061 6.061 27 C -0.104 4.104 28 N -0.129 5.129 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.218 0.782 33 H 0.173 0.827 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.213 0.787 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.038 -9.245 -2.165 9.712 hybrid contribution 0.237 1.395 0.475 1.493 sum 2.275 -7.850 -1.690 8.346 Atomic orbital electron populations 1.21973 0.73783 1.04823 1.03871 1.48351 1.07149 1.03929 1.54802 1.24926 0.91277 0.95025 0.95683 1.19438 0.92309 0.93313 1.20930 1.22085 0.96635 0.90093 0.86078 1.18121 0.87577 0.92829 1.13899 1.24650 0.93252 0.93654 0.95714 1.81172 1.13965 1.02458 1.06041 1.17670 0.87592 0.81961 0.76566 1.90737 1.26850 1.72949 1.53670 1.48147 1.09256 1.07370 1.66793 1.19950 0.77145 0.95216 0.97143 1.21310 1.01893 1.43752 0.92547 0.92206 1.24670 0.96521 0.94311 0.95902 1.69876 1.14381 1.41814 1.24501 0.86696 0.78728 0.78802 0.84043 1.20363 1.21249 1.20203 1.19726 0.88035 0.97223 0.87647 1.23188 0.93610 0.91870 0.98012 1.21677 1.04266 1.02902 0.93331 1.21788 1.01441 1.00222 1.00162 1.23952 1.04177 0.98968 0.84927 1.84094 1.49057 1.48713 1.24263 1.24177 0.95070 0.93869 0.97313 1.77004 1.02186 1.08449 1.25294 0.90288 0.89056 0.88977 0.78181 0.82738 0.94290 0.93639 0.92665 0.87114 0.88800 0.83431 0.83934 0.78688 0.78998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 11.44 59.84 0.68 1.62 16 2 N -0.36 -5.08 3.98 -67.44 -0.27 -5.35 16 3 C 0.08 1.27 10.19 -16.34 -0.17 1.10 16 4 C -0.25 -3.65 6.06 -105.15 -0.64 -4.29 16 5 C 0.08 1.16 9.79 -36.45 -0.36 0.80 16 6 C -0.12 -2.19 5.82 -104.54 -0.61 -2.80 16 7 C 0.24 4.97 7.05 -22.47 -0.16 4.81 16 8 N -0.36 -8.13 12.48 41.84 0.52 -7.61 16 9 C 0.57 11.66 7.57 -12.70 -0.10 11.56 16 10 O -0.56 -11.74 15.88 5.22 0.08 -11.66 16 11 N -0.59 -12.16 2.45 -177.85 -0.44 -12.60 16 12 C 0.23 5.29 4.70 -5.19 -0.02 5.26 16 13 C -0.56 -14.07 6.56 -34.44 -0.23 -14.30 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.09 2.39 3.81 -17.82 -0.07 2.33 16 16 N -0.87 -23.59 12.88 55.43 0.71 -22.88 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.20 3.58 5.93 -5.19 -0.03 3.55 16 22 C -0.02 -0.27 6.90 -35.62 -0.25 -0.51 16 23 C -0.20 -3.38 10.81 -39.70 -0.43 -3.81 16 24 C -0.22 -3.16 10.91 -39.70 -0.43 -3.59 16 25 C -0.05 -0.73 12.09 29.42 0.36 -0.38 16 26 O -0.17 -2.91 10.65 5.72 0.06 -2.85 16 27 C 0.08 1.06 12.04 -16.87 -0.20 0.85 16 28 N -0.31 -4.39 12.48 30.93 0.39 -4.00 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.20 3.47 3.94 -52.49 -0.21 3.27 16 33 H 0.16 1.98 7.61 -52.49 -0.40 1.58 16 34 H 0.04 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.05 1.15 4.85 -51.93 -0.25 0.90 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.11 1.88 8.11 -51.93 -0.42 1.45 16 38 H 0.09 1.64 7.37 -51.93 -0.38 1.26 16 39 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.20 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -32.51 366.01 -5.67 -38.17 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.58 Total: 5.13 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.64 Total: 2.22 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.92 Total: -52.43 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.14 Total: -14.51 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.51 -5.67 -38.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136457799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.033 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds