Wall clock time and date at job start Sat Apr 11 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42893 * 109.46630 * 2 1 4 4 C 1.42903 * 113.99958 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47386 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00279 * 359.97438 * 5 4 3 7 7 N 1.34786 * 120.00099 * 179.97438 * 5 4 3 8 8 C 1.38467 * 119.99832 * 175.95586 * 7 5 4 9 9 C 1.38639 * 126.09657 * 80.71735 * 8 7 5 10 10 C 1.43202 * 126.81398 * 359.93604 * 9 8 7 11 11 N 6.94936 * 118.73160 * 34.03006 * 2 1 3 12 12 C 1.47398 * 106.37120 * 179.97438 * 9 8 7 13 13 C 1.40849 * 126.47519 * 180.02562 * 12 9 8 14 14 H 1.08001 * 120.00133 * 0.02562 * 13 12 9 15 15 C 1.40003 * 119.99884 * 179.97438 * 13 12 9 16 16 N 1.30806 * 120.00201 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99882 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46709 * 0.02562 * 17 15 13 19 19 H 1.48490 * 109.47059 * 119.99988 * 17 15 13 20 20 H 1.48500 * 109.46858 * 240.00300 * 17 15 13 21 21 N 1.32788 * 107.05059 * 359.97438 * 12 9 8 22 22 N 1.36122 * 126.09738 * 260.39855 * 8 7 5 23 23 C 1.39787 * 125.18744 * 0.02562 * 22 8 7 24 24 C 1.38973 * 120.07372 * 319.17177 * 23 22 8 25 25 C 1.38081 * 119.91886 * 179.72087 * 24 23 22 26 26 C 1.38319 * 120.07716 * 0.55411 * 25 24 23 27 27 C 1.38314 * 120.15802 * 359.72744 * 26 25 24 28 28 C 1.38084 * 120.07741 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47369 * 299.99767 * 1 2 3 31 31 H 1.09003 * 109.47151 * 60.00773 * 1 2 3 32 32 H 1.08999 * 109.47216 * 239.99746 * 2 1 3 33 33 H 1.09002 * 109.46541 * 119.99675 * 2 1 3 34 34 H 1.09001 * 109.47226 * 59.99639 * 4 3 2 35 35 H 1.09004 * 109.46657 * 299.99800 * 4 3 2 36 36 H 0.96997 * 119.99278 * 355.96502 * 7 5 4 37 37 H 0.97002 * 120.00336 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.04337 * 359.97438 * 24 23 22 39 39 H 1.07993 * 119.96372 * 180.30199 * 25 24 23 40 40 H 1.07999 * 119.92483 * 179.73816 * 26 25 24 41 41 H 1.07996 * 119.95868 * 180.02562 * 27 26 25 42 42 H 1.07998 * 120.03505 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8193 2.9162 0.0012 6 8 2.9609 3.7729 0.0006 7 7 5.1209 3.2664 0.0023 8 6 5.4787 4.6014 -0.0817 9 6 5.4940 5.5104 0.9650 10 6 5.1450 5.2534 2.3298 11 7 4.8707 5.0502 3.4102 12 6 5.9400 6.7940 0.3940 13 6 6.1063 8.0072 1.0899 14 1 5.9001 8.0550 2.1490 15 6 6.5399 9.1511 0.4090 16 7 6.7911 9.0930 -0.8734 17 14 6.7610 10.7600 1.3321 18 1 6.4152 10.5615 2.7625 19 1 8.1738 11.2038 1.2218 20 1 5.8703 11.7935 0.7458 21 7 6.1566 6.5902 -0.9001 22 7 5.8838 5.2539 -1.2056 23 6 6.0057 4.6763 -2.4727 24 6 6.5372 3.3993 -2.6077 25 6 6.6509 2.8295 -3.8603 26 6 6.2470 3.5326 -4.9809 27 6 5.7230 4.8060 -4.8508 28 6 5.6008 5.3796 -3.6007 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8340 0.9765 -0.8891 35 1 3.8332 0.9768 0.8909 36 1 5.8068 2.5832 0.0618 37 1 7.0911 9.8855 -1.3453 38 1 6.8573 2.8516 -1.7336 39 1 7.0593 1.8353 -3.9656 40 1 6.3409 3.0862 -5.9599 41 1 5.4083 5.3519 -5.7279 42 1 5.1911 6.3738 -3.4999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142826224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:57 Heat of formation + Delta-G solvation = 52.781053 kcal Electronic energy + Delta-G solvation = -28740.371799 eV Core-core repulsion = 24687.633780 eV Total energy + Delta-G solvation = -4052.738019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.65066 -39.31717 -38.32865 -37.61997 -35.47769 -34.71351 -33.70624 -32.19620 -31.74528 -30.77348 -29.12784 -28.71878 -27.20197 -26.00490 -23.17806 -22.98349 -22.34395 -21.33819 -20.59991 -20.04617 -18.45121 -17.37167 -16.94956 -16.69047 -16.60944 -16.43244 -15.74127 -15.18598 -14.95738 -14.83412 -14.59684 -14.24834 -13.79526 -13.49541 -13.26808 -13.14501 -13.02172 -12.92071 -12.64076 -12.62343 -12.16944 -11.95853 -11.86195 -11.63547 -11.47578 -11.43297 -11.30812 -11.16625 -10.95665 -10.77961 -10.23301 -9.91322 -9.89363 -9.78252 -9.67002 -8.95042 -8.79597 -8.63394 -7.93469 -7.36794 -6.69054 -4.67692 1.25384 1.55556 2.24086 2.51811 2.72387 2.98689 3.12196 3.18293 3.40442 3.67574 3.72512 3.87365 3.97792 4.03367 4.44321 4.61699 4.78901 4.85738 4.99941 5.00816 5.02619 5.06327 5.10825 5.22217 5.30217 5.35560 5.42544 5.54709 5.68664 5.68837 5.84638 5.92078 6.08926 6.17730 6.36328 6.43850 6.53092 6.67881 6.76719 6.84825 6.99587 7.07487 7.22954 7.34489 7.91925 8.14902 8.35019 8.48969 8.58908 8.78479 9.39166 10.25422 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.004084 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.888229 B = 6854.255867 C = 9117.303586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.051 3.949 5 C 0.516 3.484 6 O -0.484 6.484 7 N -0.663 5.663 8 C 0.331 3.669 9 C -0.198 4.198 10 C 0.323 3.677 11 N -0.484 5.484 12 C 0.256 3.744 13 C -0.425 4.425 14 H 0.090 0.910 15 C 0.073 3.927 16 N -0.752 5.752 17 Si 0.915 3.085 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.272 1.272 21 N -0.307 5.307 22 N -0.340 5.340 23 C 0.186 3.814 24 C -0.147 4.147 25 C -0.104 4.104 26 C -0.142 4.142 27 C -0.102 4.102 28 C -0.108 4.108 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.409 0.591 37 H 0.279 0.721 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 -16.530 -7.233 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.281 6.281 4 C -0.029 4.029 5 C 0.301 3.699 6 O -0.353 6.353 7 N -0.319 5.319 8 C 0.111 3.889 9 C -0.218 4.218 10 C 0.011 3.989 11 N -0.163 5.163 12 C 0.105 3.895 13 C -0.464 4.464 14 H 0.108 0.892 15 C -0.150 4.150 16 N -0.377 5.377 17 Si 0.739 3.261 18 H -0.183 1.183 19 H -0.198 1.198 20 H -0.198 1.198 21 N -0.136 5.136 22 N -0.112 5.112 23 C 0.092 3.908 24 C -0.168 4.168 25 C -0.123 4.123 26 C -0.161 4.161 27 C -0.121 4.121 28 C -0.128 4.128 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.246 0.754 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.257 -15.496 -6.918 17.120 hybrid contribution 0.593 -0.148 0.616 0.868 sum -1.664 -15.644 -6.302 16.948 Atomic orbital electron populations 1.21733 0.93370 1.02157 1.03623 1.22552 0.96056 0.83287 1.00162 1.88048 1.18200 1.26410 1.95424 1.22091 0.84311 0.93694 1.02831 1.20428 0.82036 0.90917 0.76547 1.90818 1.48562 1.51536 1.44432 1.42405 1.07674 1.05210 1.76603 1.17478 1.00845 0.83049 0.87572 1.17051 1.22336 0.96610 0.85759 1.24389 0.91199 0.91860 0.91490 1.80934 1.13674 1.09715 1.11968 1.20260 0.90499 0.89902 0.88881 1.18721 1.40682 0.90709 0.96262 0.89228 1.25899 0.93422 1.00781 0.94882 1.69866 1.29278 1.30372 1.08198 0.86122 0.78576 0.80611 0.80758 1.18297 1.19811 1.19768 1.79189 1.36258 0.84178 1.13953 1.46588 1.51512 1.10063 1.03074 1.17448 0.97494 0.92337 0.83531 1.20939 1.02346 0.95364 0.98106 1.20838 1.00026 0.99619 0.91784 1.21069 1.01363 0.95279 0.98389 1.21029 0.98964 0.95292 0.96783 1.21164 0.99484 1.01076 0.91030 0.90998 0.91606 0.91623 0.93138 0.93140 0.89833 0.89954 0.75363 0.91007 0.86421 0.85918 0.86228 0.85746 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.52 6.66 37.16 0.25 0.76 16 3 O -0.36 -5.02 9.88 -55.14 -0.54 -5.57 16 4 C 0.05 0.59 6.42 36.00 0.23 0.82 16 5 C 0.52 8.69 7.86 -10.98 -0.09 8.60 16 6 O -0.48 -10.93 16.47 -14.35 -0.24 -11.17 16 7 N -0.66 -10.49 4.20 -10.92 -0.05 -10.54 16 8 C 0.33 6.91 6.18 -152.44 -0.94 5.96 16 9 C -0.20 -4.73 6.20 -104.09 -0.65 -5.38 16 10 C 0.32 7.63 15.66 -22.57 -0.35 7.28 16 11 N -0.48 -11.48 18.52 41.72 0.77 -10.70 16 12 C 0.26 6.77 6.94 -82.74 -0.57 6.20 16 13 C -0.42 -11.23 9.26 -37.93 -0.35 -11.58 16 14 H 0.09 2.31 7.85 -52.49 -0.41 1.90 16 15 C 0.07 1.83 5.50 -17.33 -0.10 1.74 16 16 N -0.75 -19.44 11.95 55.55 0.66 -18.77 16 17 Si 0.92 18.75 29.56 -169.99 -5.03 13.73 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 N -0.31 -7.98 10.53 33.37 0.35 -7.63 16 22 N -0.34 -7.48 3.70 -9.39 -0.03 -7.52 16 23 C 0.19 3.47 6.26 -83.69 -0.52 2.95 16 24 C -0.15 -2.12 9.08 -39.37 -0.36 -2.47 16 25 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 26 C -0.14 -1.69 10.04 -39.52 -0.40 -2.09 16 27 C -0.10 -1.41 10.04 -39.61 -0.40 -1.81 16 28 C -0.11 -1.91 9.80 -39.37 -0.39 -2.30 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.41 4.55 7.97 -40.82 -0.33 4.22 16 37 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 38 H 0.12 1.45 6.66 -52.49 -0.35 1.10 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -34.68 382.34 -7.86 -42.54 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.87 Total: 3.73 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -4.65 Total: 6.14 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 1.71 Total: -55.16 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.78 Total: -16.74 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.68 -7.86 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142826224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.317 kcal (2) G-P(sol) polarization free energy of solvation -34.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds