Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42893 * 109.46630 * 2 1 4 4 C 1.42903 * 113.99958 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47386 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00279 * 359.97438 * 5 4 3 7 7 N 1.34786 * 120.00099 * 179.97438 * 5 4 3 8 8 C 1.38467 * 119.99832 * 175.95586 * 7 5 4 9 9 C 1.38639 * 126.09657 * 80.71735 * 8 7 5 10 10 C 1.43202 * 126.81398 * 359.93604 * 9 8 7 11 11 N 6.94936 * 118.73160 * 34.03006 * 2 1 3 12 12 C 1.47398 * 106.37120 * 179.97438 * 9 8 7 13 13 C 1.40849 * 126.47519 * 180.02562 * 12 9 8 14 14 H 1.08001 * 120.00133 * 0.02562 * 13 12 9 15 15 C 1.40003 * 119.99884 * 179.97438 * 13 12 9 16 16 N 1.30806 * 120.00201 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99882 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46709 * 0.02562 * 17 15 13 19 19 H 1.48490 * 109.47059 * 119.99988 * 17 15 13 20 20 H 1.48500 * 109.46858 * 240.00300 * 17 15 13 21 21 N 1.32788 * 107.05059 * 359.97438 * 12 9 8 22 22 N 1.36122 * 126.09738 * 260.39855 * 8 7 5 23 23 C 1.39787 * 125.18744 * 0.02562 * 22 8 7 24 24 C 1.38973 * 120.07372 * 319.17177 * 23 22 8 25 25 C 1.38081 * 119.91886 * 179.72087 * 24 23 22 26 26 C 1.38319 * 120.07716 * 0.55411 * 25 24 23 27 27 C 1.38314 * 120.15802 * 359.72744 * 26 25 24 28 28 C 1.38084 * 120.07741 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47369 * 299.99767 * 1 2 3 31 31 H 1.09003 * 109.47151 * 60.00773 * 1 2 3 32 32 H 1.08999 * 109.47216 * 239.99746 * 2 1 3 33 33 H 1.09002 * 109.46541 * 119.99675 * 2 1 3 34 34 H 1.09001 * 109.47226 * 59.99639 * 4 3 2 35 35 H 1.09004 * 109.46657 * 299.99800 * 4 3 2 36 36 H 0.96997 * 119.99278 * 355.96502 * 7 5 4 37 37 H 0.97002 * 120.00336 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.04337 * 359.97438 * 24 23 22 39 39 H 1.07993 * 119.96372 * 180.30199 * 25 24 23 40 40 H 1.07999 * 119.92483 * 179.73816 * 26 25 24 41 41 H 1.07996 * 119.95868 * 180.02562 * 27 26 25 42 42 H 1.07998 * 120.03505 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8193 2.9162 0.0012 6 8 2.9609 3.7729 0.0006 7 7 5.1209 3.2664 0.0023 8 6 5.4787 4.6014 -0.0817 9 6 5.4940 5.5104 0.9650 10 6 5.1450 5.2534 2.3298 11 7 4.8707 5.0502 3.4102 12 6 5.9400 6.7940 0.3940 13 6 6.1063 8.0072 1.0899 14 1 5.9001 8.0550 2.1490 15 6 6.5399 9.1511 0.4090 16 7 6.7911 9.0930 -0.8734 17 14 6.7610 10.7600 1.3321 18 1 6.4152 10.5615 2.7625 19 1 8.1738 11.2038 1.2218 20 1 5.8703 11.7935 0.7458 21 7 6.1566 6.5902 -0.9001 22 7 5.8838 5.2539 -1.2056 23 6 6.0057 4.6763 -2.4727 24 6 6.5372 3.3993 -2.6077 25 6 6.6509 2.8295 -3.8603 26 6 6.2470 3.5326 -4.9809 27 6 5.7230 4.8060 -4.8508 28 6 5.6008 5.3796 -3.6007 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8340 0.9765 -0.8891 35 1 3.8332 0.9768 0.8909 36 1 5.8068 2.5832 0.0618 37 1 7.0911 9.8855 -1.3453 38 1 6.8573 2.8516 -1.7336 39 1 7.0593 1.8353 -3.9656 40 1 6.3409 3.0862 -5.9599 41 1 5.4083 5.3519 -5.7279 42 1 5.1911 6.3738 -3.4999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142826224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = 30.863995 kcal Electronic energy + Delta-G solvation = -28741.322194 eV Core-core repulsion = 24687.633780 eV Total energy + Delta-G solvation = -4053.688414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.18938 -40.63863 -39.60663 -38.65105 -37.31112 -36.32195 -35.42002 -33.75978 -32.50104 -31.90676 -30.61830 -30.24645 -28.48914 -27.74832 -24.54764 -23.68646 -23.60670 -22.65310 -22.29311 -21.55415 -19.94031 -18.71258 -18.51299 -18.03786 -17.67104 -17.44603 -16.99220 -16.78719 -16.37072 -16.21355 -15.80314 -15.53392 -15.10469 -15.02768 -14.70251 -14.35652 -14.25272 -14.09155 -14.00769 -13.93824 -13.65570 -13.45081 -13.24960 -12.97344 -12.92908 -12.83803 -12.47650 -12.33447 -12.20007 -12.05947 -11.91350 -11.48815 -11.39754 -11.16565 -10.68002 -10.54756 -10.32685 -9.92116 -9.64192 -9.00566 -8.56279 -6.64744 -0.09083 0.42872 0.76193 1.17981 1.31431 1.40964 1.42751 1.56519 1.80949 1.91213 2.06080 2.24489 2.58809 2.83011 2.93816 3.36921 3.48182 3.54122 3.93330 4.03082 4.11416 4.16528 4.26434 4.26963 4.34285 4.36752 4.51004 4.52340 4.57566 4.61053 4.75756 4.82289 4.93532 5.03560 5.09124 5.15505 5.26883 5.32166 5.46034 5.54518 5.57767 5.94195 5.99658 6.13849 6.27180 6.49858 6.57879 6.72615 6.85008 7.01999 7.52326 8.40378 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.004084 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.888229 B = 6854.255867 C = 9117.303586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.407 6.407 4 C 0.060 3.940 5 C 0.512 3.488 6 O -0.553 6.553 7 N -0.645 5.645 8 C 0.357 3.643 9 C -0.247 4.247 10 C 0.329 3.671 11 N -0.497 5.497 12 C 0.232 3.768 13 C -0.461 4.461 14 H 0.082 0.918 15 C 0.033 3.967 16 N -0.786 5.786 17 Si 0.989 3.011 18 H -0.261 1.261 19 H -0.259 1.259 20 H -0.265 1.265 21 N -0.340 5.340 22 N -0.336 5.336 23 C 0.131 3.869 24 C -0.141 4.141 25 C -0.089 4.089 26 C -0.122 4.122 27 C -0.103 4.103 28 C -0.138 4.138 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.434 0.566 37 H 0.286 0.714 38 H 0.140 0.860 39 H 0.174 0.826 40 H 0.165 0.835 41 H 0.146 0.854 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 -20.498 -9.276 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.327 6.327 4 C -0.019 4.019 5 C 0.300 3.700 6 O -0.428 6.428 7 N -0.304 5.304 8 C 0.133 3.867 9 C -0.266 4.266 10 C 0.018 3.982 11 N -0.177 5.177 12 C 0.080 3.920 13 C -0.500 4.500 14 H 0.100 0.900 15 C -0.186 4.186 16 N -0.412 5.412 17 Si 0.809 3.191 18 H -0.185 1.185 19 H -0.184 1.184 20 H -0.190 1.190 21 N -0.169 5.169 22 N -0.109 5.109 23 C 0.040 3.960 24 C -0.161 4.161 25 C -0.107 4.107 26 C -0.141 4.141 27 C -0.122 4.122 28 C -0.158 4.158 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.136 0.864 36 H 0.277 0.723 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.191 0.809 40 H 0.182 0.818 41 H 0.164 0.836 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.053 -19.527 -9.006 21.529 hybrid contribution 0.220 0.868 0.960 1.313 sum -0.833 -18.658 -8.045 20.336 Atomic orbital electron populations 1.21801 0.93645 1.03547 1.02156 1.22821 0.95962 0.81539 1.02246 1.88007 1.19427 1.29386 1.95890 1.22252 0.83944 0.89166 1.06560 1.21648 0.81032 0.93049 0.74268 1.90796 1.50364 1.53916 1.47675 1.42413 1.08638 1.03460 1.75871 1.17498 0.97955 0.84819 0.86448 1.17119 1.25960 0.96843 0.86713 1.24411 0.90742 0.91619 0.91462 1.80893 1.14755 1.10128 1.11930 1.20569 0.90900 0.91055 0.89513 1.18956 1.42645 0.92089 0.96260 0.89974 1.26772 0.92419 1.03827 0.95618 1.69950 1.29997 1.31683 1.09618 0.85047 0.79108 0.75948 0.78998 1.18485 1.18385 1.18962 1.79013 1.36824 0.87039 1.14037 1.46705 1.50451 1.09059 1.04671 1.18029 1.01276 0.94656 0.82082 1.21268 1.01004 0.93310 1.00529 1.21431 0.97910 1.01273 0.90116 1.21642 0.98063 0.93710 1.00640 1.21322 0.98673 0.96622 0.95572 1.21101 1.01538 1.00049 0.93114 0.88136 0.93309 0.92900 0.90623 0.91251 0.85315 0.86358 0.72306 0.90334 0.84274 0.80904 0.81764 0.83597 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.41 -10.54 9.88 -129.94 -1.28 -11.83 16 4 C 0.06 1.18 6.42 71.23 0.46 1.64 16 5 C 0.51 16.87 7.86 87.65 0.69 17.56 16 6 O -0.55 -25.95 16.47 16.01 0.26 -25.69 16 7 N -0.64 -19.86 4.20 -306.84 -1.29 -21.15 16 8 C 0.36 15.43 6.18 131.98 0.82 16.24 16 9 C -0.25 -12.54 6.20 -19.52 -0.12 -12.67 16 10 C 0.33 16.38 15.66 88.37 1.38 17.76 16 11 N -0.50 -24.49 18.52 18.97 0.35 -24.14 16 12 C 0.23 13.20 6.94 42.05 0.29 13.49 16 13 C -0.46 -26.14 9.26 23.34 0.22 -25.93 16 14 H 0.08 4.58 7.85 -2.91 -0.02 4.55 16 15 C 0.03 1.76 5.50 85.27 0.47 2.23 16 16 N -0.79 -43.02 11.95 21.84 0.26 -42.76 16 17 Si 0.99 40.08 29.56 68.60 2.03 42.11 16 18 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 21 N -0.34 -18.98 10.53 -48.34 -0.51 -19.49 16 22 N -0.34 -15.53 3.70 -183.62 -0.68 -16.21 16 23 C 0.13 4.95 6.26 38.22 0.24 5.19 16 24 C -0.14 -3.65 9.08 22.41 0.20 -3.44 16 25 C -0.09 -1.61 10.04 22.25 0.22 -1.38 16 26 C -0.12 -2.28 10.04 22.31 0.22 -2.06 16 27 C -0.10 -2.67 10.04 22.25 0.22 -2.45 16 28 C -0.14 -5.09 9.80 22.41 0.22 -4.87 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.43 8.51 7.97 -92.71 -0.74 7.77 16 37 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 38 H 0.14 2.89 6.66 -2.91 -0.02 2.87 16 39 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 41 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 42 H 0.10 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -87.07 382.34 6.24 -80.83 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.34 Total: 17.43 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 6.75 Total: 20.90 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -1.86 Total: -123.74 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.02 Total: -37.52 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -87.07 6.24 -80.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142826224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.691 kcal (2) G-P(sol) polarization free energy of solvation -87.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds