Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47602 * 2 1 4 4 C 1.35039 * 117.00461 * 179.97438 * 3 2 1 5 5 O 1.21776 * 119.99784 * 0.02562 * 4 3 2 6 6 C 1.41172 * 119.99964 * 180.02562 * 4 3 2 7 7 C 1.40905 * 127.01725 * 86.97184 * 6 4 3 8 8 C 1.40481 * 131.01333 * 0.03703 * 7 6 4 9 9 C 1.36311 * 119.48193 * 179.97438 * 8 7 6 10 10 C 1.40292 * 119.41375 * 359.97438 * 9 8 7 11 11 C 1.34937 * 120.33246 * 0.02562 * 10 9 8 12 12 N 1.36953 * 120.93786 * 359.97438 * 11 10 9 13 13 C 1.37976 * 130.15086 * 180.02562 * 12 11 10 14 14 N 1.33210 * 133.00882 * 359.97438 * 13 12 11 15 15 C 1.31595 * 120.77496 * 180.02562 * 14 13 12 16 16 N 1.31987 * 122.74212 * 359.73197 * 15 14 13 17 17 C 1.33062 * 120.94375 * 0.53885 * 16 15 14 18 18 N 1.38214 * 120.85776 * 179.75384 * 17 16 15 19 19 C 1.46499 * 119.99368 * 95.24330 * 18 17 16 20 20 C 1.36904 * 120.00410 * 275.24028 * 18 17 16 21 21 H 1.08005 * 119.99797 * 358.90688 * 20 18 17 22 22 C 1.38778 * 119.99884 * 178.89476 * 20 18 17 23 23 N 1.31574 * 120.00174 * 338.58320 * 22 20 18 24 24 Si 1.86799 * 119.99429 * 158.85500 * 22 20 18 25 25 H 1.48491 * 109.47336 * 90.00605 * 24 22 20 26 26 H 1.48502 * 109.46968 * 210.00261 * 24 22 20 27 27 H 1.48499 * 109.47557 * 330.00003 * 24 22 20 28 28 C 1.40410 * 108.50698 * 179.97438 * 13 12 11 29 29 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47021 * 299.99755 * 1 2 3 31 31 H 1.08998 * 109.46853 * 59.99940 * 1 2 3 32 32 H 1.09002 * 109.46704 * 239.99909 * 2 1 3 33 33 H 1.09001 * 109.47080 * 120.00786 * 2 1 3 34 34 H 1.08002 * 120.25882 * 0.02562 * 8 7 6 35 35 H 1.08005 * 120.29113 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.83051 * 180.02562 * 10 9 8 37 37 H 1.08003 * 119.53559 * 180.02562 * 11 10 9 38 38 H 1.08002 * 118.62443 * 180.02562 * 15 14 13 39 39 H 1.09007 * 109.47277 * 245.33926 * 19 18 17 40 40 H 1.09001 * 109.47622 * 5.34064 * 19 18 17 41 41 H 1.09006 * 109.47142 * 125.34539 * 19 18 17 42 42 H 0.97000 * 119.99798 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3452 1.5241 0.0005 5 8 4.0870 0.5583 0.0005 6 6 3.8848 2.8286 0.0011 7 6 4.1537 3.6349 1.1249 8 6 3.9754 3.3928 2.4972 9 6 4.3218 4.3547 3.3987 10 6 4.8512 5.5703 2.9401 11 6 5.0159 5.7863 1.6183 12 7 4.6726 4.8297 0.7004 13 6 4.7584 4.8465 -0.6766 14 7 5.1852 5.7579 -1.5494 15 6 5.1589 5.5160 -2.8426 16 7 4.7221 4.3772 -3.3471 17 6 4.2701 3.4072 -2.5563 18 7 3.8085 2.2174 -3.0868 19 6 4.7060 1.0640 -3.1890 20 6 2.5125 2.1166 -3.5166 21 1 1.8460 2.9614 -3.4249 22 6 2.0556 0.9290 -4.0703 23 7 2.9116 0.0638 -4.5701 24 14 0.2244 0.5622 -4.1128 25 1 -0.3560 1.0850 -5.3757 26 1 0.0119 -0.9058 -4.0409 27 1 -0.4384 1.2155 -2.9556 28 6 4.2801 3.6212 -1.1680 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 3.5678 2.4515 2.8353 35 1 4.1899 4.1826 4.4568 36 1 5.1284 6.3369 3.6485 37 1 5.4250 6.7267 1.2794 38 1 5.5137 6.2794 -3.5191 39 1 4.8726 0.8253 -4.2394 40 1 5.6583 1.3014 -2.7148 41 1 4.2547 0.2070 -2.6889 42 1 2.5922 -0.7664 -4.9568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = 76.660666 kcal Electronic energy + Delta-G solvation = -30569.966676 eV Core-core repulsion = 26518.264155 eV Total energy + Delta-G solvation = -4051.702521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.25479 -39.70214 -39.47570 -36.21464 -36.12491 -35.51896 -33.39045 -32.27789 -31.23220 -30.99762 -29.81039 -28.17152 -26.28129 -25.36547 -24.40210 -23.39483 -22.90378 -22.31794 -21.35267 -19.88479 -18.68337 -17.72545 -17.16733 -16.89613 -16.48814 -16.05144 -15.80325 -15.64795 -15.57835 -15.14831 -14.78473 -14.23131 -14.09345 -13.81326 -13.64687 -13.13070 -13.06857 -12.95894 -12.47637 -12.30524 -12.18823 -11.78398 -11.58190 -11.29834 -11.19608 -11.09599 -11.01926 -10.74877 -10.54590 -10.45087 -10.34523 -10.16933 -9.96297 -9.87340 -9.51367 -8.92908 -8.71869 -8.64549 -7.51060 -6.95858 -6.08310 -3.38694 0.45986 1.03083 1.80771 2.08642 2.27856 2.67308 3.21710 3.27928 3.28357 3.33057 3.63399 4.10668 4.37702 4.39895 4.44211 4.56153 4.70301 4.86688 4.95100 5.05505 5.18646 5.20483 5.32623 5.38790 5.48277 5.59063 5.67535 5.70392 5.83272 5.95125 6.02947 6.11213 6.14993 6.22039 6.33710 6.45270 6.53361 6.64282 6.87133 7.04210 7.12901 7.29564 7.52318 7.57475 7.71065 8.01493 8.40043 8.77764 8.87498 9.49710 9.80706 10.90002 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.005614 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.227002 B = 4986.270496 C = 6554.500178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.338 6.338 4 C 0.572 3.428 5 O -0.500 6.500 6 C -0.183 4.183 7 C 0.135 3.865 8 C -0.109 4.109 9 C -0.090 4.090 10 C -0.175 4.175 11 C 0.094 3.906 12 N -0.362 5.362 13 C 0.283 3.717 14 N -0.554 5.554 15 C 0.316 3.684 16 N -0.545 5.545 17 C 0.473 3.527 18 N -0.521 5.521 19 C 0.162 3.838 20 C -0.246 4.246 21 H 0.084 0.916 22 C 0.016 3.984 23 N -0.879 5.879 24 Si 0.907 3.093 25 H -0.282 1.282 26 H -0.282 1.282 27 H -0.267 1.267 28 C -0.130 4.130 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.007 0.993 41 H 0.047 0.953 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 6.487 14.676 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.255 6.255 4 C 0.416 3.584 5 O -0.388 6.388 6 C -0.194 4.194 7 C 0.030 3.970 8 C -0.128 4.128 9 C -0.110 4.110 10 C -0.196 4.196 11 C -0.026 4.026 12 N -0.035 5.035 13 C 0.050 3.950 14 N -0.277 5.277 15 C 0.025 3.975 16 N -0.266 5.266 17 C 0.228 3.772 18 N -0.234 5.234 19 C 0.019 3.981 20 C -0.374 4.374 21 H 0.102 0.898 22 C -0.186 4.186 23 N -0.520 5.520 24 Si 0.734 3.266 25 H -0.208 1.208 26 H -0.207 1.207 27 H -0.192 1.192 28 C -0.143 4.143 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.209 0.791 39 H 0.089 0.911 40 H 0.025 0.975 41 H 0.066 0.934 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.032 6.773 13.958 15.549 hybrid contribution -1.085 -0.778 0.280 1.365 sum -0.054 5.994 14.239 15.449 Atomic orbital electron populations 1.21853 0.93358 1.02412 1.03508 1.22529 0.94972 0.81521 1.02135 1.86315 1.24193 1.31338 1.83616 1.18172 0.80489 0.88222 0.71552 1.90874 1.60425 1.42518 1.44939 1.17797 1.15397 0.95248 0.90942 1.18255 1.00662 0.84927 0.93134 1.20557 1.02463 1.01196 0.88632 1.21058 0.97131 0.92751 1.00091 1.20656 1.05652 0.99601 0.93686 1.21918 0.98329 0.93483 0.88899 1.40976 1.45886 1.12738 1.03864 1.18202 1.01913 0.92484 0.82367 1.67237 1.23599 1.33412 1.03431 1.24387 0.92978 0.93040 0.87070 1.68870 1.13856 1.02899 1.41008 1.17939 0.86460 0.87797 0.85039 1.41679 1.10208 1.04423 1.67119 1.21250 0.88321 0.86921 1.01589 1.19389 0.82777 0.98592 1.36634 0.89832 1.24928 0.99013 0.97001 0.97633 1.70205 1.33261 1.10812 1.37718 0.86240 0.83791 0.77866 0.78713 1.20844 1.20705 1.19157 1.20617 1.05068 0.93850 0.94744 0.90815 0.91965 0.91085 0.90980 0.92318 0.83751 0.84361 0.83389 0.81678 0.79093 0.91142 0.97455 0.93432 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 37.16 0.38 -1.88 16 2 C 0.06 1.12 6.10 37.16 0.23 1.35 16 3 O -0.34 -6.98 10.11 -41.43 -0.42 -7.40 16 4 C 0.57 12.45 7.26 31.85 0.23 12.68 16 5 O -0.50 -11.66 16.86 -19.48 -0.33 -11.99 16 6 C -0.18 -3.86 6.00 -104.37 -0.63 -4.48 16 7 C 0.14 2.34 6.68 -83.70 -0.56 1.78 16 8 C -0.11 -1.44 10.00 -39.43 -0.39 -1.83 16 9 C -0.09 -0.88 10.09 -39.50 -0.40 -1.28 16 10 C -0.17 -1.64 9.98 -39.98 -0.40 -2.04 16 11 C 0.09 1.15 10.84 -16.44 -0.18 0.97 16 12 N -0.36 -6.05 2.94 -59.72 -0.18 -6.22 16 13 C 0.28 5.59 8.06 -154.83 -1.25 4.34 16 14 N -0.55 -10.37 10.47 -13.69 -0.14 -10.51 16 15 C 0.32 5.89 12.23 -92.16 -1.13 4.77 16 16 N -0.54 -12.35 10.47 -13.65 -0.14 -12.49 16 17 C 0.47 11.52 6.04 -154.71 -0.94 10.59 16 18 N -0.52 -13.68 2.79 -122.09 -0.34 -14.02 16 19 C 0.16 4.21 8.98 59.85 0.54 4.75 16 20 C -0.25 -6.70 9.72 -15.09 -0.15 -6.85 16 21 H 0.08 2.30 7.91 -52.48 -0.42 1.88 16 22 C 0.02 0.42 5.20 -17.46 -0.09 0.33 16 23 N -0.88 -24.08 10.04 55.49 0.56 -23.52 16 24 Si 0.91 20.59 29.56 -169.99 -5.02 15.56 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.84 6.30 56.52 0.36 -5.48 16 28 C -0.13 -2.93 6.32 -104.83 -0.66 -3.59 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.18 7.29 -51.93 -0.38 0.81 16 32 H 0.07 1.44 8.13 -51.93 -0.42 1.02 16 33 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 36 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.19 2.69 8.06 -52.49 -0.42 2.27 16 39 H 0.07 1.93 6.83 -51.93 -0.35 1.57 16 40 H 0.01 0.17 7.90 -51.93 -0.41 -0.24 16 41 H 0.05 1.30 7.45 -51.93 -0.39 0.91 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -32.61 366.04 -10.82 -43.43 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.93 Total: 2.04 kcal Atomic # 6 Polarization: 24.99 SS G_CDS: -5.39 Total: 19.60 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -0.24 Total: -66.77 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.75 Total: -19.39 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.61 -10.82 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.090 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds