Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47602 * 2 1 4 4 C 1.35039 * 117.00461 * 179.97438 * 3 2 1 5 5 O 1.21776 * 119.99784 * 0.02562 * 4 3 2 6 6 C 1.41172 * 119.99964 * 180.02562 * 4 3 2 7 7 C 1.40905 * 127.01725 * 86.97184 * 6 4 3 8 8 C 1.40481 * 131.01333 * 0.03703 * 7 6 4 9 9 C 1.36311 * 119.48193 * 179.97438 * 8 7 6 10 10 C 1.40292 * 119.41375 * 359.97438 * 9 8 7 11 11 C 1.34937 * 120.33246 * 0.02562 * 10 9 8 12 12 N 1.36953 * 120.93786 * 359.97438 * 11 10 9 13 13 C 1.37976 * 130.15086 * 180.02562 * 12 11 10 14 14 N 1.33210 * 133.00882 * 359.97438 * 13 12 11 15 15 C 1.31595 * 120.77496 * 180.02562 * 14 13 12 16 16 N 1.31987 * 122.74212 * 359.73197 * 15 14 13 17 17 C 1.33062 * 120.94375 * 0.53885 * 16 15 14 18 18 N 1.38214 * 120.85776 * 179.75384 * 17 16 15 19 19 C 1.46499 * 119.99368 * 95.24330 * 18 17 16 20 20 C 1.36904 * 120.00410 * 275.24028 * 18 17 16 21 21 H 1.08005 * 119.99797 * 358.90688 * 20 18 17 22 22 C 1.38778 * 119.99884 * 178.89476 * 20 18 17 23 23 N 1.31574 * 120.00174 * 338.58320 * 22 20 18 24 24 Si 1.86799 * 119.99429 * 158.85500 * 22 20 18 25 25 H 1.48491 * 109.47336 * 90.00605 * 24 22 20 26 26 H 1.48502 * 109.46968 * 210.00261 * 24 22 20 27 27 H 1.48499 * 109.47557 * 330.00003 * 24 22 20 28 28 C 1.40410 * 108.50698 * 179.97438 * 13 12 11 29 29 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47021 * 299.99755 * 1 2 3 31 31 H 1.08998 * 109.46853 * 59.99940 * 1 2 3 32 32 H 1.09002 * 109.46704 * 239.99909 * 2 1 3 33 33 H 1.09001 * 109.47080 * 120.00786 * 2 1 3 34 34 H 1.08002 * 120.25882 * 0.02562 * 8 7 6 35 35 H 1.08005 * 120.29113 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.83051 * 180.02562 * 10 9 8 37 37 H 1.08003 * 119.53559 * 180.02562 * 11 10 9 38 38 H 1.08002 * 118.62443 * 180.02562 * 15 14 13 39 39 H 1.09007 * 109.47277 * 245.33926 * 19 18 17 40 40 H 1.09001 * 109.47622 * 5.34064 * 19 18 17 41 41 H 1.09006 * 109.47142 * 125.34539 * 19 18 17 42 42 H 0.97000 * 119.99798 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3452 1.5241 0.0005 5 8 4.0870 0.5583 0.0005 6 6 3.8848 2.8286 0.0011 7 6 4.1537 3.6349 1.1249 8 6 3.9754 3.3928 2.4972 9 6 4.3218 4.3547 3.3987 10 6 4.8512 5.5703 2.9401 11 6 5.0159 5.7863 1.6183 12 7 4.6726 4.8297 0.7004 13 6 4.7584 4.8465 -0.6766 14 7 5.1852 5.7579 -1.5494 15 6 5.1589 5.5160 -2.8426 16 7 4.7221 4.3772 -3.3471 17 6 4.2701 3.4072 -2.5563 18 7 3.8085 2.2174 -3.0868 19 6 4.7060 1.0640 -3.1890 20 6 2.5125 2.1166 -3.5166 21 1 1.8460 2.9614 -3.4249 22 6 2.0556 0.9290 -4.0703 23 7 2.9116 0.0638 -4.5701 24 14 0.2244 0.5622 -4.1128 25 1 -0.3560 1.0850 -5.3757 26 1 0.0119 -0.9058 -4.0409 27 1 -0.4384 1.2155 -2.9556 28 6 4.2801 3.6212 -1.1680 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 3.5678 2.4515 2.8353 35 1 4.1899 4.1826 4.4568 36 1 5.1284 6.3369 3.6485 37 1 5.4250 6.7267 1.2794 38 1 5.5137 6.2794 -3.5191 39 1 4.8726 0.8253 -4.2394 40 1 5.6583 1.3014 -2.7148 41 1 4.2547 0.2070 -2.6889 42 1 2.5922 -0.7664 -4.9568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = 59.035791 kcal Electronic energy + Delta-G solvation = -30570.730948 eV Core-core repulsion = 26518.264155 eV Total energy + Delta-G solvation = -4052.466793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.67300 -41.27347 -41.01408 -37.96354 -37.65317 -36.85217 -34.88029 -33.84108 -32.73639 -32.54527 -31.24225 -29.53574 -28.27755 -26.90432 -25.82055 -24.92260 -24.35112 -23.68826 -22.87847 -21.40339 -20.18014 -19.33865 -18.77723 -18.43965 -17.99794 -17.61468 -17.21924 -17.09047 -16.83473 -16.58705 -16.25333 -15.69249 -15.55063 -15.37159 -15.26903 -14.66222 -14.55426 -14.47890 -14.20163 -13.69128 -13.32862 -13.22122 -13.01126 -12.90834 -12.71919 -12.64954 -12.47579 -12.29551 -12.23452 -12.10361 -12.05408 -11.91437 -11.58345 -11.38352 -10.98516 -10.85782 -10.39550 -10.14991 -9.41258 -8.29237 -7.99225 -5.45239 -0.79946 -0.25995 0.30976 0.65957 0.91038 1.07992 1.38829 1.39908 1.52728 2.02594 2.31357 2.37955 2.75830 2.83531 3.06338 3.14111 3.19632 3.44182 3.75163 3.81604 3.94679 3.97721 4.01283 4.08311 4.14907 4.22512 4.34211 4.38538 4.53024 4.56207 4.80587 4.86743 4.91018 4.96409 5.05977 5.11462 5.18166 5.19046 5.27760 5.44629 5.50211 5.52158 5.54709 5.78230 6.05812 6.13771 6.82867 6.87476 7.16388 7.61762 7.93657 9.01502 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.005614 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.227002 B = 4986.270496 C = 6554.500178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 O -0.349 6.349 4 C 0.580 3.420 5 O -0.533 6.533 6 C -0.266 4.266 7 C 0.177 3.823 8 C -0.154 4.154 9 C -0.033 4.033 10 C -0.144 4.144 11 C 0.071 3.929 12 N -0.358 5.358 13 C 0.269 3.731 14 N -0.519 5.519 15 C 0.303 3.697 16 N -0.563 5.563 17 C 0.460 3.540 18 N -0.551 5.551 19 C 0.197 3.803 20 C -0.269 4.269 21 H 0.066 0.934 22 C -0.027 4.027 23 N -0.922 5.922 24 Si 0.957 3.043 25 H -0.282 1.282 26 H -0.277 1.277 27 H -0.258 1.258 28 C -0.149 4.149 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.193 0.807 36 H 0.206 0.794 37 H 0.192 0.808 38 H 0.240 0.760 39 H 0.044 0.956 40 H 0.005 0.995 41 H 0.020 0.980 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 10.419 20.451 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.265 6.265 4 C 0.425 3.575 5 O -0.423 6.423 6 C -0.276 4.276 7 C 0.069 3.931 8 C -0.173 4.173 9 C -0.053 4.053 10 C -0.164 4.164 11 C -0.049 4.049 12 N -0.030 5.030 13 C 0.035 3.965 14 N -0.239 5.239 15 C 0.013 3.987 16 N -0.283 5.283 17 C 0.216 3.784 18 N -0.270 5.270 19 C 0.053 3.947 20 C -0.397 4.397 21 H 0.084 0.916 22 C -0.223 4.223 23 N -0.566 5.566 24 Si 0.782 3.218 25 H -0.208 1.208 26 H -0.202 1.202 27 H -0.183 1.183 28 C -0.161 4.161 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.174 0.826 35 H 0.210 0.790 36 H 0.223 0.777 37 H 0.209 0.791 38 H 0.256 0.744 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.039 0.961 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.382 10.844 19.768 22.589 hybrid contribution -0.908 -1.417 -0.759 1.846 sum 0.474 9.427 19.009 21.223 Atomic orbital electron populations 1.21874 0.90656 1.04324 1.03439 1.22754 0.97097 0.80487 1.01441 1.86315 1.24060 1.32752 1.83344 1.18357 0.80415 0.88419 0.70299 1.90819 1.61031 1.43807 1.46659 1.17781 1.21255 0.96589 0.91949 1.18767 0.96483 0.83662 0.94140 1.20902 1.05839 1.03667 0.86843 1.21868 0.90610 0.90728 1.02109 1.21483 1.01641 1.00216 0.93067 1.22782 0.99051 0.93619 0.89416 1.41193 1.45067 1.13523 1.03183 1.18320 1.02408 0.91718 0.84054 1.67371 1.20891 1.32229 1.03381 1.25273 0.92601 0.93045 0.87750 1.68784 1.13871 1.03546 1.42096 1.18297 0.86327 0.87542 0.86235 1.41438 1.10144 1.05112 1.70355 1.20692 0.88016 0.86663 0.99325 1.19149 0.84189 0.98675 1.37668 0.91626 1.25524 1.02403 0.96635 0.97766 1.70328 1.34482 1.11333 1.40424 0.85488 0.79858 0.77815 0.78661 1.20824 1.20176 1.18286 1.20757 1.05147 0.95705 0.94469 0.87931 0.89491 0.93485 0.94600 0.90095 0.82593 0.78960 0.77697 0.79113 0.74433 0.93783 0.97630 0.96118 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 10.28 71.98 0.74 -3.55 16 2 C 0.06 2.12 6.10 71.98 0.44 2.55 16 3 O -0.35 -15.22 10.11 -59.60 -0.60 -15.83 16 4 C 0.58 26.81 7.26 68.54 0.50 27.31 16 5 O -0.53 -26.82 16.86 18.93 0.32 -26.50 16 6 C -0.27 -11.59 6.00 -19.70 -0.12 -11.70 16 7 C 0.18 5.80 6.68 39.54 0.26 6.06 16 8 C -0.15 -3.34 10.00 22.37 0.22 -3.11 16 9 C -0.03 -0.37 10.09 22.32 0.23 -0.14 16 10 C -0.14 -1.42 9.98 22.01 0.22 -1.20 16 11 C 0.07 1.27 10.84 83.13 0.90 2.18 16 12 N -0.36 -10.84 2.94 -342.84 -1.01 -11.84 16 13 C 0.27 10.35 8.06 133.48 1.08 11.42 16 14 N -0.52 -18.48 10.47 -197.24 -2.06 -20.55 16 15 C 0.30 11.05 12.23 180.89 2.21 13.26 16 16 N -0.56 -26.49 10.47 -197.11 -2.06 -28.55 16 17 C 0.46 23.85 6.04 133.46 0.81 24.66 16 18 N -0.55 -31.64 2.79 -540.17 -1.50 -33.14 16 19 C 0.20 11.37 8.98 127.77 1.15 12.52 16 20 C -0.27 -16.03 9.72 84.03 0.82 -15.21 16 21 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 22 C -0.03 -1.53 5.20 84.86 0.44 -1.09 16 23 N -0.92 -55.52 10.04 21.64 0.22 -55.30 16 24 Si 0.96 45.48 29.56 68.60 2.03 47.51 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.26 -11.68 6.30 99.48 0.63 -11.05 16 28 C -0.15 -6.94 6.32 -20.00 -0.13 -7.06 16 29 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.60 7.29 -2.39 -0.02 1.59 16 32 H 0.04 1.58 8.13 -2.39 -0.02 1.56 16 33 H 0.08 2.60 8.13 -2.39 -0.02 2.58 16 34 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.19 0.40 8.06 -2.91 -0.02 0.37 16 36 H 0.21 0.01 8.06 -2.91 -0.02 -0.02 16 37 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.24 6.12 8.06 -2.91 -0.02 6.10 16 39 H 0.04 2.69 6.83 -2.38 -0.02 2.67 16 40 H 0.01 0.28 7.90 -2.39 -0.02 0.26 16 41 H 0.02 1.25 7.45 -2.38 -0.02 1.24 16 42 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -84.66 366.04 6.07 -78.59 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.98 Total: 8.74 kcal Atomic # 6 Polarization: 47.11 SS G_CDS: 9.77 Total: 56.88 kcal Atomic # 7 Polarization: -142.96 SS G_CDS: -6.42 Total: -149.39 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.28 Total: -42.33 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -84.66 6.07 -78.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.630 kcal (2) G-P(sol) polarization free energy of solvation -84.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds