Wall clock time and date at job start Sat Apr 11 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99685 * 2 1 4 4 H 1.48502 * 109.46987 * 270.00470 * 3 2 1 5 5 H 1.48503 * 109.47152 * 30.00238 * 3 2 1 6 6 H 1.48498 * 109.46996 * 150.00506 * 3 2 1 7 7 C 1.37872 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99706 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00234 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46891 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46658 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.46844 * 179.97438 * 11 10 9 13 13 O 1.42104 * 110.54228 * 68.38193 * 12 11 10 14 14 O 1.42101 * 110.54359 * 291.62816 * 12 11 10 15 15 N 1.65598 * 104.44929 * 180.02562 * 12 11 10 16 16 C 1.47082 * 120.88125 * 90.00113 * 15 12 11 17 17 C 1.53243 * 108.52229 * 231.16139 * 16 15 12 18 18 N 1.46895 * 109.34053 * 306.17241 * 17 16 15 19 19 C 1.39001 * 111.00005 * 187.25000 * 18 17 16 20 20 C 1.39335 * 120.09360 * 179.97438 * 19 18 17 21 21 N 1.31919 * 119.88981 * 180.02562 * 20 19 18 22 22 C 1.32271 * 120.08514 * 0.02562 * 21 20 19 23 23 C 1.38163 * 120.19710 * 359.97438 * 22 21 20 24 24 N 1.32254 * 120.10199 * 359.97438 * 23 22 21 25 25 C 1.46899 * 111.27335 * 63.10229 * 18 17 16 26 26 C 1.47080 * 120.88184 * 269.97983 * 15 12 11 27 27 H 0.97002 * 120.00700 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46969 * 59.99393 * 9 7 2 29 29 H 1.08996 * 109.46492 * 299.99152 * 9 7 2 30 30 H 1.09002 * 109.47026 * 59.99675 * 10 9 7 31 31 H 1.08991 * 109.46938 * 299.99514 * 10 9 7 32 32 H 1.09002 * 109.47169 * 60.00373 * 11 10 9 33 33 H 1.09002 * 109.47388 * 300.00253 * 11 10 9 34 34 H 1.09004 * 109.62928 * 111.45626 * 16 15 12 35 35 H 1.08993 * 109.62829 * 350.87034 * 16 15 12 36 36 H 1.08999 * 109.49168 * 186.20703 * 17 16 15 37 37 H 1.09004 * 109.51303 * 66.14146 * 17 16 15 38 38 H 1.08003 * 120.05849 * 0.02562 * 20 19 18 39 39 H 1.08008 * 119.90778 * 180.02562 * 22 21 20 40 40 H 1.07995 * 119.94994 * 180.27794 * 23 22 21 41 41 H 1.09002 * 109.49252 * 56.84840 * 25 18 17 42 42 H 1.08998 * 109.50024 * 176.93633 * 25 18 17 43 43 H 1.09004 * 109.62886 * 248.54220 * 26 15 12 44 44 H 1.08996 * 109.63019 * 9.12428 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6363 -0.0022 12 16 6.1563 -4.3465 -0.0013 13 8 5.8594 -4.9811 -1.2376 14 8 5.8612 -4.9791 1.2364 15 7 7.8060 -4.2015 -0.0021 16 6 8.5585 -4.1346 1.2599 17 6 9.4873 -2.9168 1.2089 18 7 10.3132 -2.9855 -0.0040 19 6 11.2804 -1.9870 -0.0052 20 6 12.1709 -1.8783 -1.0713 21 7 13.0875 -0.9295 -1.0681 22 6 13.1618 -0.0829 -0.0545 23 6 12.2806 -0.1875 1.0044 24 7 11.3581 -1.1351 1.0086 25 6 9.4864 -2.9189 -1.2163 26 6 8.5575 -4.1367 -1.2647 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6802 0.8887 29 1 3.8745 -0.6800 -0.8912 30 1 3.6579 -3.1505 -0.8907 31 1 3.6587 -3.1500 0.8892 32 1 5.9157 -2.1222 0.8873 33 1 5.9143 -2.1227 -0.8927 34 1 9.1505 -5.0417 1.3818 35 1 7.8652 -4.0315 2.0946 36 1 10.1315 -2.9137 2.0881 37 1 8.8910 -2.0045 1.1916 38 1 12.1109 -2.5695 -1.8989 39 1 13.9132 0.6931 -0.0550 40 1 12.3421 0.5087 1.8278 41 1 8.8897 -2.0068 -1.2000 42 1 10.1300 -2.9172 -2.0960 43 1 9.1495 -5.0440 -1.3854 44 1 7.8636 -4.0351 -2.0990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109337921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:09 Heat of formation + Delta-G solvation = -4.121404 kcal Electronic energy + Delta-G solvation = -27511.001105 eV Core-core repulsion = 23591.239562 eV Total energy + Delta-G solvation = -3919.761543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.72002 -39.28606 -37.11905 -35.94605 -35.55579 -34.86372 -34.26257 -32.25553 -31.71195 -30.88482 -28.43502 -27.08986 -25.60950 -23.81315 -23.63425 -23.46237 -21.23056 -20.37159 -19.12471 -18.27500 -17.94932 -17.38731 -17.00546 -16.83706 -16.36406 -16.07777 -15.82346 -15.14877 -15.07810 -14.99673 -14.72987 -14.31876 -14.25456 -13.94539 -13.40007 -12.99770 -12.92538 -12.68434 -12.39868 -12.24901 -12.17261 -12.00687 -11.89945 -11.78175 -11.73581 -11.65987 -11.59930 -11.22851 -11.04268 -10.99248 -10.62967 -10.14547 -9.92705 -9.80167 -9.54051 -9.33680 -9.20140 -8.70532 -8.62415 -6.11887 -4.11401 0.24733 0.37495 0.72053 2.50370 2.84548 3.23016 3.29979 3.30918 3.32550 3.78939 3.85594 3.87935 4.06163 4.09053 4.20269 4.36710 4.52198 4.60567 4.68168 4.75966 4.79045 4.88546 4.94119 4.98916 5.02369 5.05867 5.12207 5.21668 5.37155 5.46688 5.56014 5.62767 5.70219 5.81568 6.03163 6.07717 6.20450 6.24310 6.46082 6.61537 6.92447 7.07501 7.21590 7.37678 7.67103 8.43845 8.92414 9.49113 11.01390 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.003086 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.643395 B = 9071.866603 C =10867.005433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.097 4.097 11 C -0.616 4.616 12 S 2.600 3.400 13 O -0.954 6.954 14 O -0.954 6.954 15 N -1.009 6.009 16 C 0.124 3.876 17 C 0.048 3.952 18 N -0.466 5.466 19 C 0.268 3.732 20 C 0.040 3.960 21 N -0.419 5.419 22 C 0.010 3.990 23 C 0.083 3.917 24 N -0.478 5.478 25 C 0.040 3.960 26 C 0.127 3.873 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.424 -3.528 -0.086 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.042 4.042 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.697 3.303 13 O -0.945 6.945 14 O -0.944 6.944 15 N -0.845 5.845 16 C -0.002 4.002 17 C -0.080 4.080 18 N -0.184 5.184 19 C 0.032 3.968 20 C -0.125 4.125 21 N -0.132 5.132 22 C -0.149 4.149 23 C -0.078 4.078 24 N -0.198 5.198 25 C -0.088 4.088 26 C 0.001 3.999 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.187 0.813 39 H 0.186 0.814 40 H 0.187 0.813 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 27.983 -4.757 -0.085 28.385 hybrid contribution 0.292 2.423 0.116 2.443 sum 28.275 -2.334 0.030 28.371 Atomic orbital electron populations 1.69905 1.06269 1.27014 1.50611 1.25019 0.94751 0.99139 0.94444 0.86787 0.80310 0.83693 0.78524 1.20225 1.21196 1.19142 1.21127 0.89211 0.94791 1.51425 0.90690 1.19521 0.97373 0.90676 0.96656 1.21316 0.86542 1.02978 1.02823 1.30671 1.09529 1.23563 1.10971 1.05476 0.72296 0.78209 0.74354 1.93577 1.82556 1.73071 1.45269 1.93579 1.82552 1.73125 1.45134 1.58078 1.24735 1.90107 1.11610 1.21585 0.94826 0.98348 0.85411 1.22510 0.95327 0.98337 0.91845 1.58988 1.14852 1.39086 1.05452 1.20931 0.95075 0.88951 0.91806 1.23305 0.92474 0.97896 0.98843 1.68367 1.18236 1.01801 1.24843 1.23576 1.00598 0.99445 0.91231 1.23628 0.90501 0.94911 0.98725 1.68408 1.21837 1.03115 1.26418 1.22812 0.95509 0.99437 0.91001 1.21504 0.94759 0.97890 0.85726 0.92582 0.96232 0.96700 0.90972 0.90928 0.85546 0.85636 0.90037 0.88020 0.88166 0.92245 0.81251 0.81419 0.81262 0.92412 0.88335 0.89685 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 9 C 0.00 -0.08 4.04 -27.88 -0.11 -0.20 16 10 C -0.10 -1.85 5.16 -26.73 -0.14 -1.99 16 11 C -0.62 -8.53 6.18 37.16 0.23 -8.30 16 12 S 2.60 35.21 5.42 -107.50 -0.58 34.62 16 13 O -0.95 -15.37 16.79 -57.54 -0.97 -16.33 16 14 O -0.95 -15.59 16.79 -57.54 -0.97 -16.55 16 15 N -1.01 -10.08 3.26 -113.23 -0.37 -10.45 16 16 C 0.12 1.09 6.46 -3.60 -0.02 1.07 16 17 C 0.05 0.41 4.83 -3.70 -0.02 0.39 16 18 N -0.47 -3.82 4.66 -172.76 -0.80 -4.62 16 19 C 0.27 2.37 6.40 -154.74 -0.99 1.38 16 20 C 0.04 0.33 10.33 -17.11 -0.18 0.15 16 21 N -0.42 -3.69 10.49 -12.88 -0.14 -3.83 16 22 C 0.01 0.07 11.21 -17.39 -0.19 -0.12 16 23 C 0.08 0.58 11.22 -17.40 -0.20 0.38 16 24 N -0.48 -4.42 8.85 -12.24 -0.11 -4.53 16 25 C 0.04 0.28 5.42 -3.70 -0.02 0.26 16 26 C 0.13 1.00 6.47 -3.60 -0.02 0.98 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 29 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.13 1.54 8.14 -51.92 -0.42 1.11 16 33 H 0.13 1.49 8.14 -51.92 -0.42 1.06 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.88 7.19 -51.93 -0.37 0.51 16 36 H 0.10 0.83 7.66 -51.93 -0.40 0.43 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.17 0.98 7.15 -52.48 -0.38 0.61 16 39 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.47 6.65 -51.93 -0.35 0.12 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.78 7.19 -51.93 -0.37 0.41 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -37.00 369.44 -10.80 -47.80 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.45 Total: -2.18 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.09 Total: -19.36 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.64 Total: -50.20 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.93 Total: -32.88 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 35.21 SS G_CDS: -0.58 Total: 34.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.00 -10.80 -47.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109337921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.678 kcal (2) G-P(sol) polarization free energy of solvation -37.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds