Wall clock time and date at job start Sat Apr 11 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86796 * 120.00033 * 2 1 4 4 H 1.48505 * 109.47170 * 270.00113 * 3 2 1 5 5 H 1.48505 * 109.47347 * 29.99728 * 3 2 1 6 6 H 1.48499 * 109.47499 * 149.99956 * 3 2 1 7 7 C 1.40049 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00207 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99916 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99954 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00080 * 180.02562 * 9 7 2 12 12 C 1.46502 * 119.99851 * 180.02562 * 11 9 7 13 13 H 1.08994 * 109.50934 * 325.08387 * 12 11 9 14 14 C 1.53126 * 109.53249 * 85.18107 * 12 11 9 15 15 C 1.53099 * 109.15071 * 177.61063 * 14 12 11 16 16 C 1.53034 * 109.29509 * 302.33888 * 15 14 12 17 17 N 1.46847 * 109.51345 * 59.18740 * 16 15 14 18 18 C 1.39934 * 111.00076 * 174.16834 * 17 16 15 19 19 C 1.38859 * 120.02181 * 123.67720 * 18 17 16 20 20 C 1.38108 * 119.98331 * 179.74257 * 19 18 17 21 21 C 1.38699 * 120.01883 * 0.51051 * 20 19 18 22 22 O 1.36006 * 119.98558 * 179.74420 * 21 20 19 23 23 C 1.42899 * 116.99756 * 0.02562 * 22 21 20 24 24 F 1.39900 * 109.47345 * 300.00086 * 23 22 21 25 25 F 1.39905 * 109.46752 * 60.00149 * 23 22 21 26 26 C 1.38707 * 120.03853 * 359.76647 * 21 20 19 27 27 C 1.38112 * 120.01452 * 359.97438 * 26 21 20 28 28 C 1.46854 * 111.19790 * 298.26320 * 17 16 15 29 29 H 0.96998 * 120.00020 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00211 * 0.02562 * 11 9 7 31 31 H 1.08990 * 109.52264 * 297.51727 * 14 12 11 32 32 H 1.09002 * 109.52383 * 57.64512 * 14 12 11 33 33 H 1.09007 * 109.48839 * 182.39531 * 15 14 12 34 34 H 1.09009 * 109.50682 * 62.29317 * 15 14 12 35 35 H 1.09002 * 109.46271 * 299.17460 * 16 15 14 36 36 H 1.08994 * 109.46242 * 179.19760 * 16 15 14 37 37 H 1.07998 * 120.00850 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.99758 * 180.22800 * 20 19 18 39 39 H 1.08997 * 109.47040 * 180.02562 * 23 22 21 40 40 H 1.07993 * 119.99445 * 179.97438 * 26 21 20 41 41 H 1.08000 * 120.00732 * 180.02562 * 27 26 21 42 42 H 1.08993 * 109.46229 * 181.76227 * 28 17 16 43 43 H 1.09008 * 109.45822 * 301.73281 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 1 0.3047 -4.8105 0.5866 14 6 0.8561 -5.2988 -1.4394 15 6 0.1439 -6.6541 -1.4353 16 6 1.0514 -7.7002 -0.7841 17 7 1.3667 -7.2889 0.5899 18 6 2.0863 -8.2853 1.2590 19 6 3.3227 -7.9921 1.8188 20 6 4.0298 -8.9747 2.4836 21 6 3.5100 -10.2568 2.5830 22 8 4.2093 -11.2252 3.2334 23 6 5.4712 -10.8513 3.7899 24 9 6.3151 -10.3989 2.7700 25 9 5.2831 -9.8297 4.7271 26 6 2.2776 -10.5520 2.0192 27 6 1.5668 -9.5692 1.3587 28 6 2.0930 -6.0127 0.6087 29 1 -0.4850 0.8400 -0.0004 30 1 2.9190 -3.6477 -0.0002 31 1 0.1963 -4.5418 -1.8631 32 1 1.7651 -5.3657 -2.0372 33 1 -0.0774 -6.9517 -2.4603 34 1 -0.7849 -6.5755 -0.8701 35 1 1.9741 -7.7882 -1.3577 36 1 0.5412 -8.6632 -0.7668 37 1 3.7297 -6.9951 1.7376 38 1 4.9899 -8.7460 2.9222 39 1 5.9229 -11.7146 4.2786 40 1 1.8737 -11.5506 2.0967 41 1 0.6070 -9.7991 0.9201 42 1 2.3396 -5.7503 1.6375 43 1 3.0108 -6.1086 0.0285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187378317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:40 Heat of formation + Delta-G solvation = -148.914661 kcal Electronic energy + Delta-G solvation = -29267.584020 eV Core-core repulsion = 24755.410633 eV Total energy + Delta-G solvation = -4512.173388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.67398 -47.66590 -40.64203 -39.33233 -37.64248 -36.46275 -33.75816 -32.58574 -32.22222 -31.26467 -29.30830 -28.72707 -26.27927 -26.09579 -24.39382 -23.56612 -21.87878 -21.61923 -19.90126 -19.48835 -19.21191 -18.41750 -18.23092 -17.28686 -17.15764 -16.21748 -15.51041 -15.30811 -14.98423 -14.87676 -14.65789 -14.42157 -14.25182 -14.11249 -13.98017 -13.86692 -13.75611 -13.64151 -13.52734 -13.07257 -12.95912 -12.53723 -12.31878 -12.12444 -12.05592 -11.85610 -11.27606 -11.14995 -11.05231 -10.93034 -10.64939 -10.48158 -10.32151 -10.24726 -10.15708 -9.46374 -9.20247 -8.85671 -7.71619 -7.61624 -7.53414 -6.18877 -4.64624 1.13351 1.17127 2.27508 3.13836 3.14089 3.20749 3.23994 3.40793 3.71514 3.94417 4.11907 4.29274 4.57403 4.57764 4.63227 4.81957 4.95419 5.03017 5.09127 5.12864 5.18566 5.32521 5.40190 5.45669 5.59708 5.66052 5.75539 5.81676 5.85612 5.93567 6.00329 6.06708 6.11861 6.29178 6.34269 6.36803 6.71899 6.75820 6.80975 6.99886 7.24473 7.43101 7.91481 8.09240 8.32221 9.02266 9.52335 10.59851 10.78472 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.002409 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.429000 B =11622.368717 C =12999.566227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.578 6.578 11 N -0.763 5.763 12 C 0.160 3.840 13 H 0.085 0.915 14 C -0.131 4.131 15 C -0.117 4.117 16 C 0.060 3.940 17 N -0.482 5.482 18 C 0.102 3.898 19 C -0.135 4.135 20 C -0.159 4.159 21 C 0.067 3.933 22 O -0.323 6.323 23 C 0.411 3.589 24 F -0.200 7.200 25 F -0.199 7.199 26 C -0.108 4.108 27 C -0.111 4.111 28 C 0.047 3.953 29 H 0.268 0.732 30 H 0.378 0.622 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.179 0.821 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.084 0.916 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.585 -23.668 3.787 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.460 6.460 11 N -0.417 5.417 12 C 0.053 3.947 13 H 0.103 0.897 14 C -0.170 4.170 15 C -0.155 4.155 16 C -0.065 4.065 17 N -0.197 5.197 18 C 0.004 3.996 19 C -0.156 4.156 20 C -0.178 4.178 21 C 0.024 3.976 22 O -0.241 6.241 23 C 0.321 3.679 24 F -0.182 7.182 25 F -0.181 7.181 26 C -0.127 4.127 27 C -0.131 4.131 28 C -0.080 4.080 29 H 0.079 0.921 30 H 0.209 0.791 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.195 0.805 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.103 0.897 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.964 -23.558 4.007 25.188 hybrid contribution 1.875 1.034 -0.243 2.155 sum 9.838 -22.523 3.764 24.865 Atomic orbital electron populations 1.70016 1.07030 1.27255 1.35323 1.25699 0.94613 1.00265 0.92638 0.86385 0.80163 0.81472 0.78798 1.19778 1.20462 1.18937 1.20877 0.93552 0.89403 1.54435 0.91499 1.18191 0.87220 0.82292 0.76184 1.90603 1.14021 1.86674 1.54711 1.46156 1.08374 1.04599 1.82573 1.20408 0.95876 0.83562 0.94803 0.89662 1.22038 1.00322 0.96346 0.98315 1.21606 0.99153 0.94651 1.00083 1.22279 0.99186 0.99071 0.85941 1.58985 1.42545 1.02160 1.16048 1.19043 0.90949 0.91485 0.98168 1.21223 0.93363 1.00205 1.00847 1.21367 1.01484 0.92227 1.02734 1.18725 0.93439 0.87472 0.97988 1.86594 1.31103 1.37456 1.68983 1.23312 0.79285 0.87821 0.77501 1.93100 1.71829 1.91092 1.62182 1.93110 1.94899 1.64237 1.65833 1.20241 0.92382 1.00365 0.99674 1.20620 1.00153 0.91169 1.01149 1.22563 0.95390 0.88130 1.01953 0.92111 0.79070 0.90655 0.92778 0.91270 0.90752 0.93956 0.90279 0.84661 0.85076 0.80460 0.84819 0.84624 0.89742 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.99 11.83 55.55 0.66 -22.33 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 20.12 29.56 -169.99 -5.02 15.10 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.55 -15.29 9.54 -35.63 -0.34 -15.63 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.60 7.72 -12.99 -0.10 15.50 16 10 O -0.58 -18.46 14.68 5.20 0.08 -18.38 16 11 N -0.76 -16.64 5.08 -55.13 -0.28 -16.92 16 12 C 0.16 3.03 2.62 -67.84 -0.18 2.85 16 13 H 0.09 1.90 7.57 -51.93 -0.39 1.51 16 14 C -0.13 -2.24 5.58 -26.62 -0.15 -2.39 16 15 C -0.12 -1.57 6.09 -26.66 -0.16 -1.73 16 16 C 0.06 0.73 5.26 -3.84 -0.02 0.71 16 17 N -0.48 -6.64 4.70 -171.09 -0.80 -7.44 16 18 C 0.10 1.30 5.64 -83.70 -0.47 0.83 16 19 C -0.14 -1.71 8.82 -39.40 -0.35 -2.06 16 20 C -0.16 -1.90 8.25 -39.46 -0.33 -2.23 16 21 C 0.07 0.76 6.48 -39.24 -0.25 0.50 16 22 O -0.32 -3.08 10.43 -19.76 -0.21 -3.28 16 23 C 0.41 2.87 5.98 101.05 0.60 3.48 16 24 F -0.20 -1.76 15.58 2.25 0.04 -1.73 16 25 F -0.20 -1.82 15.58 2.25 0.04 -1.78 16 26 C -0.11 -1.12 9.98 -39.45 -0.39 -1.51 16 27 C -0.11 -1.22 9.16 -39.40 -0.36 -1.58 16 28 C 0.05 0.71 3.62 -3.83 -0.01 0.69 16 29 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 30 H 0.38 7.25 8.58 -40.82 -0.35 6.90 16 31 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.80 6.72 -51.93 -0.35 0.45 16 37 H 0.14 1.65 5.81 -52.49 -0.30 1.34 16 38 H 0.13 1.49 5.09 -52.48 -0.27 1.22 16 39 H 0.18 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.14 1.26 7.17 -52.49 -0.38 0.89 16 42 H 0.08 1.29 7.01 -51.93 -0.36 0.93 16 43 H 0.05 0.63 7.71 -51.92 -0.40 0.23 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -35.11 357.70 -8.04 -43.15 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.31 Total: 8.47 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.61 Total: -0.23 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.43 Total: -46.70 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.13 Total: -21.67 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.07 Total: -3.51 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.11 -8.04 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187378317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.762 kcal (2) G-P(sol) polarization free energy of solvation -35.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds