Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48499 * 109.46909 * 270.00113 * 3 2 1 5 5 H 1.48497 * 109.47155 * 29.99936 * 3 2 1 6 6 H 1.48495 * 109.46964 * 150.00054 * 3 2 1 7 7 C 1.37880 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 N 1.30981 * 126.43752 * 89.71200 * 13 12 11 15 15 C 1.35213 * 105.57999 * 179.86319 * 14 13 12 16 16 C 1.48431 * 126.41542 * 180.13249 * 15 14 13 17 17 C 1.39375 * 120.08639 * 0.29558 * 16 15 14 18 18 C 1.38039 * 120.01031 * 180.02562 * 17 16 15 19 19 C 1.38227 * 120.18626 * 359.97438 * 18 17 16 20 20 C 1.38882 * 120.17762 * 0.02611 * 19 18 17 21 21 N 1.40278 * 120.00595 * 179.97438 * 20 19 18 22 22 C 1.35072 * 127.38712 * 4.99570 * 21 20 19 23 23 N 1.30741 * 107.27218 * 179.97438 * 22 21 20 24 24 N 1.28419 * 110.64518 * 0.02562 * 23 22 21 25 25 N 1.28953 * 110.20523 * 359.72660 * 24 23 22 26 26 C 1.38633 * 119.98674 * 359.71933 * 20 19 18 27 27 N 1.30760 * 107.17059 * 0.40194 * 15 14 13 28 28 O 1.21288 * 110.09800 * 359.74723 * 27 15 14 29 29 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 31 31 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 32 32 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 33 33 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 34 34 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 35 35 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 38 38 H 1.07997 * 119.99688 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.90830 * 180.02562 * 18 17 16 40 40 H 1.08003 * 119.91547 * 179.97438 * 19 18 17 41 41 H 1.08001 * 126.35940 * 359.96235 * 22 21 20 42 42 H 1.08000 * 120.09286 * 180.27525 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0018 13 6 1.7213 -7.4551 -0.0018 14 7 1.3274 -8.1259 -1.0556 15 6 0.7006 -9.2231 -0.5742 16 6 0.0760 -10.3043 -1.3766 17 6 0.1076 -10.2484 -2.7689 18 6 -0.4742 -11.2545 -3.5137 19 6 -1.0889 -12.3197 -2.8826 20 6 -1.1250 -12.3832 -1.4958 21 7 -1.7502 -13.4656 -0.8591 22 6 -2.2780 -14.5651 -1.4396 23 7 -2.7568 -15.3171 -0.4833 24 7 -2.5681 -14.7678 0.6621 25 7 -1.9571 -13.6411 0.5205 26 6 -0.5383 -11.3795 -0.7407 27 7 0.7427 -9.1503 0.7307 28 8 1.3244 -8.1427 1.0734 29 1 -0.4850 0.8399 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 2.8720 -3.6043 0.8895 33 1 2.8720 -3.6042 -0.8905 34 1 0.8541 -5.0446 -0.8914 35 1 0.8535 -5.0450 0.8885 36 1 3.1015 -6.0926 0.8881 37 1 3.1014 -6.0917 -0.8918 38 1 0.5867 -9.4174 -3.2652 39 1 -0.4484 -11.2098 -4.5924 40 1 -1.5431 -13.1043 -3.4696 41 1 -2.3005 -14.7825 -2.4973 42 1 -0.5615 -11.4294 0.3379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351339708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = 201.063363 kcal Electronic energy + Delta-G solvation = -26524.488388 eV Core-core repulsion = 22510.473123 eV Total energy + Delta-G solvation = -4014.015264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.75291 -43.72951 -40.20676 -36.55400 -36.04030 -35.24113 -33.64560 -32.90397 -32.38832 -31.31787 -30.75636 -29.44031 -26.00561 -25.67642 -25.43767 -24.10488 -23.21194 -22.38507 -22.25191 -21.07260 -20.24718 -19.24133 -18.23628 -17.47512 -17.14635 -17.10178 -16.56296 -16.26020 -15.91566 -15.43359 -15.19078 -14.64184 -14.45560 -14.25417 -14.21593 -13.80729 -13.15079 -13.12506 -13.07221 -12.63417 -12.46138 -12.38988 -12.13667 -12.09842 -11.79406 -11.71284 -11.55995 -11.28262 -11.08228 -11.04671 -10.72699 -10.67358 -10.63803 -10.41516 -9.76852 -9.56876 -9.38028 -9.23559 -9.08599 -8.38102 -6.02975 -4.05773 -0.31533 0.13276 0.93819 1.10974 1.15137 1.73262 2.05876 2.63093 2.99549 3.03968 3.29723 3.36389 3.39156 3.48531 3.60012 3.68091 4.05858 4.19274 4.26941 4.42918 4.43704 4.67572 4.70114 4.76497 4.82295 5.03555 5.12176 5.14306 5.21306 5.33050 5.43041 5.53053 5.57826 5.60484 5.72334 5.77837 5.91244 5.98627 6.06005 6.27320 6.61011 6.76321 7.04621 7.63572 7.76779 7.85290 7.89725 7.96578 8.38315 9.01605 9.58688 11.08284 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.001558 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.139008 B =17963.972092 C =18138.462630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.108 4.108 11 C -0.116 4.116 12 C -0.032 4.032 13 C 0.208 3.792 14 N -0.477 5.477 15 C 0.198 3.802 16 C 0.011 3.989 17 C -0.064 4.064 18 C -0.094 4.094 19 C -0.105 4.105 20 C 0.125 3.875 21 N -0.326 5.326 22 C 0.227 3.773 23 N -0.329 5.329 24 N -0.033 5.033 25 N -0.071 5.071 26 C -0.070 4.070 27 N -0.373 5.373 28 O 0.086 5.914 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.241 0.759 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.132 -28.090 -8.820 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.071 4.071 13 C -0.011 4.011 14 N -0.210 5.210 15 C -0.072 4.072 16 C 0.009 3.991 17 C -0.085 4.085 18 C -0.112 4.112 19 C -0.127 4.127 20 C 0.033 3.967 21 N -0.117 5.117 22 C -0.070 4.070 23 N -0.178 5.178 24 N -0.028 5.028 25 N -0.056 5.056 26 C -0.092 4.092 27 N -0.078 5.078 28 O 0.025 5.975 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.257 0.743 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.742 -29.048 -7.302 29.961 hybrid contribution 0.669 1.465 -0.813 1.804 sum -0.074 -27.583 -8.116 28.752 Atomic orbital electron populations 1.69958 1.06081 1.26636 1.50775 1.25033 0.94838 0.99297 0.95317 0.86601 0.79850 0.83496 0.78092 1.20679 1.21251 1.19856 1.21254 0.93052 0.91069 1.50672 0.92613 1.19106 0.94029 0.91304 0.97338 1.21633 0.99188 0.92980 1.00803 1.21754 0.97500 0.93323 1.02905 1.20620 0.97229 0.83199 1.06094 1.29168 0.94924 0.97271 0.79772 1.71993 1.15739 1.04533 1.28729 1.23638 1.00477 0.95309 0.87730 1.17097 0.98888 0.91024 0.92093 1.21514 0.96167 0.98928 0.91881 1.21025 0.96712 0.92474 1.01027 1.21039 1.00658 1.00304 0.90713 1.17286 1.00267 0.87786 0.91328 1.49082 1.40037 1.15824 1.06732 1.27473 0.93332 0.83497 1.02713 1.74511 1.22422 1.26327 0.94527 1.78129 1.07908 1.00223 1.16559 1.82775 1.17610 1.14274 0.90959 1.20909 0.95379 0.91342 1.01574 1.74906 1.14711 1.03494 1.14722 1.85308 1.51637 1.24655 1.35948 0.92988 0.96569 0.96545 0.92834 0.92874 0.91422 0.91560 0.87777 0.87020 0.83168 0.83225 0.84099 0.74305 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.47 4.97 -27.88 -0.14 0.33 16 10 C -0.11 -1.95 5.15 -26.74 -0.14 -2.08 16 11 C -0.12 -1.67 5.20 -26.74 -0.14 -1.81 16 12 C -0.03 -0.35 5.84 -27.88 -0.16 -0.51 16 13 C 0.21 2.54 7.75 -12.99 -0.10 2.44 16 14 N -0.48 -6.11 11.26 -9.88 -0.11 -6.22 16 15 C 0.20 2.49 7.80 -156.12 -1.22 1.27 16 16 C 0.01 0.11 5.87 -104.92 -0.62 -0.50 16 17 C -0.06 -0.46 9.70 -39.23 -0.38 -0.84 16 18 C -0.09 -0.39 10.03 -39.66 -0.40 -0.78 16 19 C -0.11 -0.42 9.49 -39.35 -0.37 -0.79 16 20 C 0.13 0.91 6.69 -83.61 -0.56 0.35 16 21 N -0.33 -2.70 3.85 -11.76 -0.05 -2.75 16 22 C 0.23 1.35 12.15 -90.15 -1.10 0.25 16 23 N -0.33 -3.22 12.15 29.64 0.36 -2.86 16 24 N -0.03 -0.40 13.39 60.35 0.81 0.41 16 25 N -0.07 -0.82 13.34 60.35 0.81 -0.02 16 26 C -0.07 -0.66 9.34 -39.08 -0.37 -1.03 16 27 N -0.37 -5.08 11.85 30.97 0.37 -4.71 16 28 O 0.09 1.13 11.29 18.06 0.20 1.33 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.15 1.02 7.87 -52.49 -0.41 0.61 16 39 H 0.15 0.17 8.06 -52.49 -0.42 -0.25 16 40 H 0.14 0.02 6.89 -52.48 -0.36 -0.34 16 41 H 0.24 -0.03 7.21 -52.49 -0.38 -0.41 16 42 H 0.15 1.63 7.58 -52.49 -0.40 1.23 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -34.70 374.63 -7.24 -41.95 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: -4.90 Total: -6.36 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -6.09 Total: -16.80 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 2.92 Total: -41.91 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.70 -7.24 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351339708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.010 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds