Wall clock time and date at job start Sat Apr 11 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48499 * 109.46909 * 270.00113 * 3 2 1 5 5 H 1.48497 * 109.47155 * 29.99936 * 3 2 1 6 6 H 1.48495 * 109.46964 * 150.00054 * 3 2 1 7 7 C 1.37880 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 N 1.30981 * 126.43752 * 89.71200 * 13 12 11 15 15 C 1.35213 * 105.57999 * 179.86319 * 14 13 12 16 16 C 1.48431 * 126.41542 * 180.13249 * 15 14 13 17 17 C 1.39375 * 120.08639 * 0.29558 * 16 15 14 18 18 C 1.38039 * 120.01031 * 180.02562 * 17 16 15 19 19 C 1.38227 * 120.18626 * 359.97438 * 18 17 16 20 20 C 1.38882 * 120.17762 * 0.02611 * 19 18 17 21 21 N 1.40278 * 120.00595 * 179.97438 * 20 19 18 22 22 C 1.35072 * 127.38712 * 4.99570 * 21 20 19 23 23 N 1.30741 * 107.27218 * 179.97438 * 22 21 20 24 24 N 1.28419 * 110.64518 * 0.02562 * 23 22 21 25 25 N 1.28953 * 110.20523 * 359.72660 * 24 23 22 26 26 C 1.38633 * 119.98674 * 359.71933 * 20 19 18 27 27 N 1.30760 * 107.17059 * 0.40194 * 15 14 13 28 28 O 1.21288 * 110.09800 * 359.74723 * 27 15 14 29 29 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 31 31 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 32 32 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 33 33 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 34 34 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 35 35 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 38 38 H 1.07997 * 119.99688 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.90830 * 180.02562 * 18 17 16 40 40 H 1.08003 * 119.91547 * 179.97438 * 19 18 17 41 41 H 1.08001 * 126.35940 * 359.96235 * 22 21 20 42 42 H 1.08000 * 120.09286 * 180.27525 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0018 13 6 1.7213 -7.4551 -0.0018 14 7 1.3274 -8.1259 -1.0556 15 6 0.7006 -9.2231 -0.5742 16 6 0.0760 -10.3043 -1.3766 17 6 0.1076 -10.2484 -2.7689 18 6 -0.4742 -11.2545 -3.5137 19 6 -1.0889 -12.3197 -2.8826 20 6 -1.1250 -12.3832 -1.4958 21 7 -1.7502 -13.4656 -0.8591 22 6 -2.2780 -14.5651 -1.4396 23 7 -2.7568 -15.3171 -0.4833 24 7 -2.5681 -14.7678 0.6621 25 7 -1.9571 -13.6411 0.5205 26 6 -0.5383 -11.3795 -0.7407 27 7 0.7427 -9.1503 0.7307 28 8 1.3244 -8.1427 1.0734 29 1 -0.4850 0.8399 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 2.8720 -3.6043 0.8895 33 1 2.8720 -3.6042 -0.8905 34 1 0.8541 -5.0446 -0.8914 35 1 0.8535 -5.0450 0.8885 36 1 3.1015 -6.0926 0.8881 37 1 3.1014 -6.0917 -0.8918 38 1 0.5867 -9.4174 -3.2652 39 1 -0.4484 -11.2098 -4.5924 40 1 -1.5431 -13.1043 -3.4696 41 1 -2.3005 -14.7825 -2.4973 42 1 -0.5615 -11.4294 0.3379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351339708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:26 Heat of formation + Delta-G solvation = 178.955006 kcal Electronic energy + Delta-G solvation = -26525.447078 eV Core-core repulsion = 22510.473123 eV Total energy + Delta-G solvation = -4014.973954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.71542 -44.37157 -40.73510 -37.53413 -37.08885 -36.07368 -35.15394 -33.85443 -33.48939 -32.15029 -31.32869 -30.86363 -27.52441 -26.37019 -26.19429 -25.02736 -24.34713 -23.33076 -22.99523 -21.88321 -21.75985 -19.89861 -19.24384 -18.40367 -18.28346 -17.79625 -17.59599 -17.11123 -16.67211 -16.41768 -16.37292 -16.03687 -15.42958 -14.88694 -14.80945 -14.63810 -14.41697 -14.29582 -13.79537 -13.72804 -13.65203 -13.50420 -13.41020 -12.93734 -12.82120 -12.64116 -12.53038 -12.35785 -12.31692 -12.19782 -12.17332 -12.08930 -11.72551 -11.54187 -11.34989 -11.24283 -10.95473 -10.51917 -10.13367 -9.82208 -8.17001 -6.27747 -0.84809 -0.52468 0.17724 0.42244 0.62137 1.10206 1.26077 1.42970 1.43919 1.54924 1.71386 2.23596 2.43768 2.49101 2.78686 2.98685 3.16798 3.26420 3.55472 3.64648 3.77222 3.91284 3.96647 4.03567 4.08724 4.11434 4.21876 4.30820 4.35854 4.58055 4.61974 4.66947 4.79388 4.81628 4.90725 4.95004 5.09604 5.16251 5.19518 5.24038 5.33233 5.34707 5.59421 5.61478 5.82365 5.91967 6.28669 6.91358 6.95787 7.18922 7.41959 8.94790 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.001558 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.139008 B =17963.972092 C =18138.462630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.106 4.106 12 C -0.021 4.021 13 C 0.208 3.792 14 N -0.487 5.487 15 C 0.198 3.802 16 C -0.020 4.020 17 C -0.066 4.066 18 C -0.078 4.078 19 C -0.077 4.077 20 C 0.113 3.887 21 N -0.328 5.328 22 C 0.251 3.749 23 N -0.359 5.359 24 N -0.061 5.061 25 N -0.112 5.112 26 C -0.088 4.088 27 N -0.401 5.401 28 O 0.075 5.925 29 H 0.262 0.738 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.194 0.806 40 H 0.195 0.805 41 H 0.305 0.695 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 -29.232 -12.135 31.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.059 4.059 13 C -0.012 4.012 14 N -0.220 5.220 15 C -0.071 4.071 16 C -0.023 4.023 17 C -0.086 4.086 18 C -0.096 4.096 19 C -0.098 4.098 20 C 0.021 3.979 21 N -0.118 5.118 22 C -0.045 4.045 23 N -0.208 5.208 24 N -0.056 5.056 25 N -0.097 5.097 26 C -0.110 4.110 27 N -0.109 5.109 28 O 0.017 5.983 29 H 0.070 0.930 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.211 0.789 40 H 0.212 0.788 41 H 0.319 0.681 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.532 -30.182 -10.605 31.995 hybrid contribution 0.225 1.764 0.080 1.780 sum 0.757 -28.418 -10.525 30.314 Atomic orbital electron populations 1.70105 1.07919 1.27619 1.52085 1.26009 0.95712 1.03482 0.94960 0.85463 0.78748 0.78499 0.78438 1.19826 1.21232 1.18427 1.21781 0.93818 0.92319 1.49903 0.91580 1.19073 0.94746 0.93563 0.94629 1.21413 0.97891 0.92009 1.01961 1.21516 0.97768 0.93228 1.02007 1.20571 0.96161 0.80731 1.08441 1.29435 0.94609 0.97566 0.79616 1.71991 1.16169 1.04844 1.29013 1.24231 0.99587 0.95681 0.87642 1.17234 1.00892 0.90933 0.93212 1.21708 0.96260 1.00013 0.90646 1.21528 0.94471 0.90798 1.02782 1.21648 0.98252 1.00918 0.88988 1.17537 1.00612 0.87137 0.92594 1.49130 1.40124 1.16685 1.05858 1.28642 0.90171 0.81332 1.04306 1.74416 1.23913 1.27664 0.94811 1.78111 1.08703 1.00725 1.18044 1.82734 1.18868 1.14655 0.93489 1.20734 0.97001 0.92704 1.00571 1.74900 1.16117 1.04208 1.15720 1.85274 1.51955 1.24815 1.36293 0.92973 0.99331 0.99351 0.91568 0.91664 0.92593 0.92434 0.85171 0.85022 0.83145 0.78911 0.78781 0.68062 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.79 13.29 21.45 0.28 -56.50 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 0.86 4.97 29.85 0.15 1.01 16 10 C -0.10 -3.37 5.15 30.59 0.16 -3.21 16 11 C -0.11 -3.04 5.20 30.59 0.16 -2.88 16 12 C -0.02 -0.41 5.84 29.85 0.17 -0.24 16 13 C 0.21 5.08 7.75 88.36 0.68 5.76 16 14 N -0.49 -12.58 11.26 -302.52 -3.41 -15.99 16 15 C 0.20 5.20 7.80 137.30 1.07 6.27 16 16 C -0.02 -0.40 5.87 -20.05 -0.12 -0.52 16 17 C -0.07 -0.80 9.70 22.50 0.22 -0.58 16 18 C -0.08 -0.27 10.03 22.22 0.22 -0.05 16 19 C -0.08 -0.22 9.49 22.42 0.21 -0.01 16 20 C 0.11 1.43 6.69 38.04 0.25 1.69 16 21 N -0.33 -4.98 3.85 -191.13 -0.74 -5.72 16 22 C 0.25 2.19 12.15 180.18 2.19 4.38 16 23 N -0.36 -6.65 12.15 -60.13 -0.73 -7.38 16 24 N -0.06 -1.52 13.39 37.02 0.50 -1.02 16 25 N -0.11 -2.72 13.34 37.02 0.49 -2.22 16 26 C -0.09 -1.72 9.34 22.60 0.21 -1.51 16 27 N -0.40 -11.71 11.85 -59.15 -0.70 -12.41 16 28 O 0.08 2.06 11.29 74.68 0.84 2.90 16 29 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 30 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.15 1.79 7.87 -2.91 -0.02 1.77 16 39 H 0.19 -0.88 8.06 -2.91 -0.02 -0.91 16 40 H 0.20 -1.52 6.89 -2.91 -0.02 -1.54 16 41 H 0.30 -2.08 7.21 -2.91 -0.02 -2.10 16 42 H 0.12 3.01 7.58 -2.91 -0.02 2.99 16 Total: -1.00 -83.33 374.63 5.91 -77.42 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: 1.06 Total: -5.31 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 6.28 Total: -19.17 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -4.30 Total: -101.25 kcal Atomic # 8 Polarization: 2.06 SS G_CDS: 0.84 Total: 2.90 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -83.33 5.91 -77.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351339708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.374 kcal (2) G-P(sol) polarization free energy of solvation -83.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds