Wall clock time and date at job start Sat Apr 11 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21694 * 120.00378 * 180.02562 * 16 15 14 18 18 C 1.46667 * 119.99924 * 0.02562 * 16 15 14 19 19 C 1.36537 * 125.98731 * 179.97438 * 18 16 15 20 20 C 1.40365 * 106.71054 * 179.97438 * 19 18 16 21 21 C 1.35130 * 107.11006 * 0.02562 * 20 19 18 22 22 C 1.50704 * 125.61500 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46879 * 210.00119 * 22 21 20 24 24 F 1.39899 * 109.47093 * 330.00246 * 22 21 20 25 25 O 1.33936 * 108.77123 * 359.75702 * 21 20 19 26 26 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 27 27 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 28 28 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 29 29 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 30 30 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 31 31 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 32 32 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 33 33 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 34 34 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 35 35 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 36 36 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 37 37 H 1.08005 * 126.65056 * 0.02562 * 19 18 16 38 38 H 1.07999 * 126.44657 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47085 * 90.00625 * 22 21 20 40 40 H 1.08997 * 113.79514 * 221.44885 * 26 15 14 41 41 H 1.08994 * 113.79584 * 89.97354 * 26 15 14 42 42 H 1.09002 * 109.63459 * 248.30727 * 27 9 7 43 43 H 1.09000 * 109.64288 * 8.91958 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2035 -7.8475 2.4946 18 6 5.3082 -6.1263 3.6053 19 6 6.0932 -6.8745 4.4348 20 6 6.8487 -5.9714 5.1988 21 6 6.4958 -4.7271 4.8074 22 6 7.0554 -3.4415 5.3598 23 9 6.0834 -2.4384 5.2821 24 9 7.4254 -3.6300 6.6958 25 8 5.5709 -4.8246 3.8436 26 6 2.6137 -5.9569 0.8092 27 6 1.8061 -3.6627 0.0013 28 1 -0.4849 -0.8358 -0.0839 29 1 0.2917 -1.2069 1.8678 30 1 -0.5551 -2.6052 1.1597 31 1 0.0287 -3.0912 3.4924 32 1 1.7352 -2.7012 3.1675 33 1 0.1333 -4.9470 1.8567 34 1 1.3747 -5.1502 3.1167 35 1 4.2501 -3.9002 1.0263 36 1 3.5755 -3.8085 2.7125 37 1 6.1270 -7.9526 4.4915 38 1 7.5749 -6.2235 5.9573 39 1 7.9293 -3.1465 4.7789 40 1 1.8842 -6.7388 1.0201 41 1 3.0271 -6.0191 -0.1974 42 1 0.9771 -4.0989 -0.5560 43 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982134466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:06 Heat of formation + Delta-G solvation = -58.110482 kcal Electronic energy + Delta-G solvation = -30451.113897 eV Core-core repulsion = 25942.878074 eV Total energy + Delta-G solvation = -4508.235823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.45968 -47.47545 -43.07810 -40.65864 -38.42164 -36.13945 -33.63394 -32.88235 -31.65583 -30.74233 -29.93888 -27.26179 -26.22285 -25.61443 -25.18359 -22.44312 -22.37298 -22.02642 -20.72303 -19.84462 -18.39706 -18.13045 -17.92786 -17.46773 -17.39723 -17.29952 -16.55830 -16.07956 -15.55898 -14.63531 -14.40274 -14.20408 -14.18384 -14.04188 -13.91635 -13.79233 -13.62614 -13.43027 -13.38766 -13.21222 -13.13069 -12.86697 -12.42078 -12.03449 -11.90119 -11.81756 -11.52230 -11.10661 -10.77687 -10.51762 -10.46227 -10.37297 -10.14033 -10.05978 -10.04634 -9.83379 -9.30352 -9.19515 -8.69648 -8.39462 -6.92575 -6.10454 -3.27889 0.60278 1.80833 1.95041 2.66845 2.99306 3.35727 3.49116 3.51754 3.64500 3.64938 4.13288 4.30983 4.41234 4.47563 4.53652 4.62551 4.94755 5.08371 5.16734 5.18162 5.26610 5.33030 5.43303 5.45564 5.56281 5.63196 5.66018 5.79157 5.84928 5.87924 5.89742 6.10512 6.23693 6.37532 6.43510 6.44913 6.53774 6.61195 6.66214 7.04826 7.17415 7.52445 7.88160 7.95691 8.53782 9.06193 9.79766 10.24004 11.18122 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.003923 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.812337 B = 7135.113172 C = 9035.473071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.021 4.021 3 Si 1.067 2.933 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.350 4.350 8 H 0.056 0.944 9 N -0.595 5.595 10 C 0.149 3.851 11 C -0.136 4.136 12 C -0.084 4.084 13 C -0.103 4.103 14 C 0.124 3.876 15 N -0.629 5.629 16 C 0.616 3.384 17 O -0.527 6.527 18 C -0.037 4.037 19 C -0.132 4.132 20 C -0.168 4.168 21 C -0.079 4.079 22 C 0.362 3.638 23 F -0.184 7.184 24 F -0.184 7.184 25 O -0.134 6.134 26 C 0.118 3.882 27 C 0.165 3.835 28 H 0.270 0.730 29 H 0.081 0.919 30 H 0.016 0.984 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.142 0.858 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.024 0.976 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.884 -10.666 9.154 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.224 4.224 3 Si 0.897 3.103 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.479 4.479 8 H 0.074 0.926 9 N -0.318 5.318 10 C 0.023 3.977 11 C -0.176 4.176 12 C -0.121 4.121 13 C -0.105 4.105 14 C 0.002 3.998 15 N -0.362 5.362 16 C 0.405 3.595 17 O -0.406 6.406 18 C -0.091 4.091 19 C -0.153 4.153 20 C -0.188 4.188 21 C -0.132 4.132 22 C 0.308 3.692 23 F -0.165 7.165 24 F -0.165 7.165 25 O -0.029 6.029 26 C -0.004 4.004 27 C 0.038 3.962 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.185 0.815 38 H 0.183 0.817 39 H 0.159 0.841 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.042 0.958 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.586 -9.460 9.115 18.193 hybrid contribution 0.348 -1.813 0.176 1.855 sum 12.934 -11.273 9.291 19.512 Atomic orbital electron populations 1.70722 1.06661 1.30452 1.47678 1.25804 0.96488 1.01409 0.98681 0.83511 0.74410 0.75701 0.76711 1.21816 1.22144 1.21646 1.19969 0.97436 0.88272 1.42178 0.92583 1.44092 1.46503 1.00860 1.40393 1.20847 0.90314 0.99471 0.87097 1.21998 1.00998 0.95110 0.99462 1.21123 0.96930 0.97790 0.96275 1.22625 0.94618 0.94151 0.99153 1.23369 0.96223 0.78202 1.01969 1.50134 1.39920 1.09258 1.36911 1.16139 0.78577 0.85062 0.79763 1.90877 1.66771 1.13574 1.69423 1.22404 1.03092 0.80590 1.02975 1.21965 0.96125 1.01565 0.95613 1.21600 1.03638 0.90521 1.03000 1.23161 0.96803 0.97432 0.95787 1.19588 0.89656 0.80069 0.79899 1.93110 1.65542 1.61720 1.96122 1.93060 1.91660 1.95329 1.36433 1.84136 1.46349 1.27570 1.44852 1.23351 0.88030 0.98200 0.90838 1.20765 0.98144 0.86152 0.91186 0.91889 0.90108 0.96556 0.92792 0.92297 0.91886 0.93154 0.89113 0.89637 0.81494 0.81709 0.84098 0.89858 0.89154 0.95798 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 12.39 55.49 0.69 -25.77 16 2 C -0.02 -0.58 4.69 -17.43 -0.08 -0.66 16 3 Si 1.07 24.52 29.99 -169.99 -5.10 19.42 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.35 -9.15 9.50 -15.06 -0.14 -9.29 16 8 H 0.06 1.47 7.94 -52.49 -0.42 1.06 16 9 N -0.60 -13.73 2.86 -172.75 -0.49 -14.22 16 10 C 0.15 3.27 4.62 -4.00 -0.02 3.25 16 11 C -0.14 -2.45 5.99 -26.80 -0.16 -2.61 16 12 C -0.08 -1.33 5.02 -26.83 -0.13 -1.46 16 13 C -0.10 -1.61 0.87 -154.43 -0.13 -1.75 16 14 C 0.12 1.91 6.89 -3.17 -0.02 1.89 16 15 N -0.63 -9.40 3.45 -182.04 -0.63 -10.02 16 16 C 0.62 9.64 8.02 -12.86 -0.10 9.54 16 17 O -0.53 -9.35 17.59 5.19 0.09 -9.26 16 18 C -0.04 -0.52 7.07 -36.79 -0.26 -0.78 16 19 C -0.13 -1.51 10.62 -39.40 -0.42 -1.93 16 20 C -0.17 -1.62 10.42 -39.89 -0.42 -2.03 16 21 C -0.08 -0.85 6.93 -35.41 -0.25 -1.09 16 22 C 0.36 3.12 5.82 36.01 0.21 3.33 16 23 F -0.18 -2.20 17.31 2.25 0.04 -2.16 16 24 F -0.18 -1.66 17.02 2.25 0.04 -1.62 16 25 O -0.13 -1.81 9.14 4.99 0.05 -1.77 16 26 C 0.12 1.62 7.97 -3.18 -0.03 1.59 16 27 C 0.16 3.08 5.71 -3.81 -0.02 3.06 16 28 H 0.27 7.85 6.77 -40.82 -0.28 7.57 16 29 H 0.08 2.04 6.23 -51.93 -0.32 1.71 16 30 H 0.02 0.37 7.94 -51.93 -0.41 -0.04 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.11 7.37 -51.93 -0.38 0.72 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.77 8.02 -51.93 -0.42 0.36 16 35 H 0.09 1.39 7.97 -51.93 -0.41 0.97 16 36 H 0.09 1.39 6.77 -51.93 -0.35 1.04 16 37 H 0.17 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 41 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.11 7.78 -51.93 -0.40 0.71 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -31.43 362.86 -7.39 -38.82 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.57 Total: 0.05 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.97 Total: 1.06 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.43 Total: -50.01 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.14 Total: -11.03 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.08 Total: -3.78 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.10 Total: 19.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.43 -7.39 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982134466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.289 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds