Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21694 * 120.00378 * 180.02562 * 16 15 14 18 18 C 1.46667 * 119.99924 * 0.02562 * 16 15 14 19 19 C 1.36537 * 125.98731 * 179.97438 * 18 16 15 20 20 C 1.40365 * 106.71054 * 179.97438 * 19 18 16 21 21 C 1.35130 * 107.11006 * 0.02562 * 20 19 18 22 22 C 1.50704 * 125.61500 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46879 * 210.00119 * 22 21 20 24 24 F 1.39899 * 109.47093 * 330.00246 * 22 21 20 25 25 O 1.33936 * 108.77123 * 359.75702 * 21 20 19 26 26 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 27 27 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 28 28 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 29 29 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 30 30 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 31 31 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 32 32 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 33 33 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 34 34 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 35 35 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 36 36 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 37 37 H 1.08005 * 126.65056 * 0.02562 * 19 18 16 38 38 H 1.07999 * 126.44657 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47085 * 90.00625 * 22 21 20 40 40 H 1.08997 * 113.79514 * 221.44885 * 26 15 14 41 41 H 1.08994 * 113.79584 * 89.97354 * 26 15 14 42 42 H 1.09002 * 109.63459 * 248.30727 * 27 9 7 43 43 H 1.09000 * 109.64288 * 8.91958 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2035 -7.8475 2.4946 18 6 5.3082 -6.1263 3.6053 19 6 6.0932 -6.8745 4.4348 20 6 6.8487 -5.9714 5.1988 21 6 6.4958 -4.7271 4.8074 22 6 7.0554 -3.4415 5.3598 23 9 6.0834 -2.4384 5.2821 24 9 7.4254 -3.6300 6.6958 25 8 5.5709 -4.8246 3.8436 26 6 2.6137 -5.9569 0.8092 27 6 1.8061 -3.6627 0.0013 28 1 -0.4849 -0.8358 -0.0839 29 1 0.2917 -1.2069 1.8678 30 1 -0.5551 -2.6052 1.1597 31 1 0.0287 -3.0912 3.4924 32 1 1.7352 -2.7012 3.1675 33 1 0.1333 -4.9470 1.8567 34 1 1.3747 -5.1502 3.1167 35 1 4.2501 -3.9002 1.0263 36 1 3.5755 -3.8085 2.7125 37 1 6.1270 -7.9526 4.4915 38 1 7.5749 -6.2235 5.9573 39 1 7.9293 -3.1465 4.7789 40 1 1.8842 -6.7388 1.0201 41 1 3.0271 -6.0191 -0.1974 42 1 0.9771 -4.0989 -0.5560 43 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982134466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -75.999117 kcal Electronic energy + Delta-G solvation = -30451.889607 eV Core-core repulsion = 25942.878074 eV Total energy + Delta-G solvation = -4509.011532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.18958 -48.22788 -43.97259 -41.91720 -39.71243 -37.75351 -34.68948 -34.40396 -32.66901 -32.33320 -31.36757 -28.34764 -27.44407 -27.13401 -26.59995 -24.05993 -23.43047 -22.91511 -22.19534 -20.93953 -19.51948 -19.29098 -19.13312 -18.83856 -18.33063 -18.20652 -17.54118 -17.27295 -16.73198 -16.31717 -15.91114 -15.46241 -15.39494 -15.21149 -15.10411 -14.89470 -14.78068 -14.64022 -14.52528 -14.19712 -14.03672 -13.97528 -13.88299 -13.47930 -13.32206 -12.97595 -12.77915 -12.60568 -12.51221 -12.04236 -11.87281 -11.85681 -11.72158 -11.39498 -11.35854 -11.29622 -11.07981 -10.40957 -10.17991 -9.80128 -8.86923 -8.18619 -5.34275 -0.34746 0.96927 1.09610 1.57870 1.61894 1.68694 1.83889 1.89539 2.57319 2.67626 2.98266 3.10997 3.25720 3.34582 3.61127 3.66076 3.69291 3.72223 3.79943 3.85009 4.14535 4.22317 4.25364 4.32523 4.35471 4.44066 4.49642 4.53809 4.56062 4.67795 4.75505 4.82748 4.85029 4.96671 5.01815 5.10046 5.15468 5.21514 5.32690 5.47396 5.56290 5.90085 6.33529 6.45419 6.72473 7.10167 7.82145 8.27441 9.06792 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.003923 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.812337 B = 7135.113172 C = 9035.473071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.074 4.074 3 Si 1.111 2.889 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.346 4.346 8 H 0.054 0.946 9 N -0.612 5.612 10 C 0.156 3.844 11 C -0.125 4.125 12 C -0.077 4.077 13 C -0.098 4.098 14 C 0.131 3.869 15 N -0.629 5.629 16 C 0.615 3.385 17 O -0.555 6.555 18 C -0.074 4.074 19 C -0.120 4.120 20 C -0.159 4.159 21 C -0.083 4.083 22 C 0.361 3.639 23 F -0.206 7.206 24 F -0.185 7.185 25 O -0.154 6.154 26 C 0.125 3.875 27 C 0.165 3.835 28 H 0.256 0.744 29 H 0.043 0.957 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.181 0.819 38 H 0.198 0.802 39 H 0.189 0.811 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.026 0.974 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.995 -11.731 10.139 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.270 4.270 3 Si 0.937 3.063 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.476 4.476 8 H 0.072 0.928 9 N -0.336 5.336 10 C 0.030 3.970 11 C -0.164 4.164 12 C -0.114 4.114 13 C -0.101 4.101 14 C 0.009 3.991 15 N -0.362 5.362 16 C 0.406 3.594 17 O -0.437 6.437 18 C -0.126 4.126 19 C -0.140 4.140 20 C -0.178 4.178 21 C -0.136 4.136 22 C 0.307 3.693 23 F -0.187 7.187 24 F -0.166 7.166 25 O -0.050 6.050 26 C 0.003 3.997 27 C 0.039 3.961 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.198 0.802 38 H 0.215 0.785 39 H 0.206 0.794 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.044 0.956 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.713 -10.556 10.103 20.736 hybrid contribution -0.256 -1.532 -0.090 1.556 sum 14.457 -12.088 10.013 21.339 Atomic orbital electron populations 1.70837 1.07647 1.29571 1.50744 1.26989 0.96550 1.04556 0.98944 0.82904 0.74479 0.72524 0.76391 1.19665 1.22118 1.21825 1.20205 0.97224 0.89435 1.40687 0.92808 1.44289 1.46501 1.01790 1.41003 1.20678 0.89962 0.98037 0.88323 1.21837 1.00954 0.95682 0.97931 1.21064 0.97462 0.96213 0.96666 1.22446 0.94750 0.94995 0.97863 1.23225 0.95902 0.78574 1.01355 1.50094 1.40088 1.08855 1.37127 1.16334 0.78576 0.84741 0.79782 1.90849 1.67889 1.14491 1.70423 1.22205 1.04647 0.81302 1.04463 1.22290 0.94912 1.02397 0.94423 1.21958 1.03515 0.89445 1.02884 1.23774 0.95892 0.98977 0.94939 1.20154 0.90300 0.78609 0.80187 1.93066 1.66814 1.62608 1.96238 1.93057 1.91522 1.95237 1.36752 1.84101 1.47408 1.27464 1.45987 1.23386 0.87973 0.96790 0.91538 1.20855 0.98097 0.84584 0.92523 0.93416 0.93874 0.97538 0.91063 0.93240 0.90956 0.92057 0.89110 0.90673 0.80211 0.78489 0.79449 0.88774 0.87435 0.95577 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.25 12.39 21.65 0.27 -55.98 16 2 C -0.07 -4.06 4.69 84.86 0.40 -3.66 16 3 Si 1.11 49.88 29.99 68.60 2.06 51.94 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.35 -18.27 9.50 84.03 0.80 -17.47 16 8 H 0.05 2.82 7.94 -2.91 -0.02 2.80 16 9 N -0.61 -28.50 2.86 -700.46 -2.00 -30.50 16 10 C 0.16 7.01 4.62 86.19 0.40 7.41 16 11 C -0.13 -4.44 5.99 30.55 0.18 -4.26 16 12 C -0.08 -2.32 5.02 30.53 0.15 -2.16 16 13 C -0.10 -2.95 0.87 -52.04 -0.05 -3.00 16 14 C 0.13 3.93 6.89 86.30 0.59 4.52 16 15 N -0.63 -18.00 3.45 -848.08 -2.93 -20.92 16 16 C 0.62 18.66 8.02 86.44 0.69 19.35 16 17 O -0.55 -19.17 17.59 -4.33 -0.08 -19.24 16 18 C -0.07 -1.95 7.07 24.07 0.17 -1.78 16 19 C -0.12 -2.48 10.62 22.39 0.24 -2.24 16 20 C -0.16 -2.58 10.42 22.07 0.23 -2.35 16 21 C -0.08 -1.60 6.93 24.97 0.17 -1.43 16 22 C 0.36 5.30 5.82 71.24 0.41 5.71 16 23 F -0.21 -4.66 17.31 44.97 0.78 -3.88 16 24 F -0.18 -2.83 17.02 44.97 0.77 -2.06 16 25 O -0.15 -3.97 9.14 -5.06 -0.05 -4.01 16 26 C 0.12 3.19 7.97 86.30 0.69 3.88 16 27 C 0.17 6.09 5.71 86.20 0.49 6.59 16 28 H 0.26 15.45 6.77 -92.71 -0.63 14.82 16 29 H 0.04 2.26 6.23 -2.39 -0.01 2.24 16 30 H 0.01 0.31 7.94 -2.38 -0.02 0.29 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.85 7.37 -2.38 -0.02 1.83 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 1.77 8.02 -2.38 -0.02 1.75 16 35 H 0.09 2.71 7.97 -2.39 -0.02 2.69 16 36 H 0.07 2.42 6.77 -2.39 -0.02 2.41 16 37 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.19 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 2.25 8.09 -2.39 -0.02 2.23 16 41 H 0.11 2.41 8.09 -2.39 -0.02 2.39 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 2.24 7.78 -2.39 -0.02 2.22 16 Total: -1.00 -69.51 362.86 5.58 -63.94 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.18 Total: 11.63 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.58 Total: 9.10 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -4.66 Total: -107.41 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.12 Total: -23.26 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 1.54 Total: -5.94 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.06 Total: 51.94 kcal Total: -69.51 5.58 -63.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982134466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.064 kcal (2) G-P(sol) polarization free energy of solvation -69.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds