Wall clock time and date at job start Sat Apr 11 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00242 * 2 1 4 4 H 1.48510 * 109.46841 * 275.54610 * 3 2 1 5 5 H 1.48500 * 109.47256 * 35.54183 * 3 2 1 6 6 H 1.48504 * 109.47551 * 155.54751 * 3 2 1 7 7 C 1.38814 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00001 * 336.07921 * 7 2 1 9 9 N 1.36938 * 120.00253 * 156.08305 * 7 2 1 10 10 C 1.43468 * 118.93476 * 319.37765 * 9 7 2 11 11 C 1.53795 * 107.95926 * 273.63242 * 10 9 7 12 12 C 1.47720 * 111.83626 * 281.59977 * 11 10 9 13 13 N 1.48218 * 110.06641 * 58.37084 * 12 11 10 14 14 C 1.34774 * 119.97129 * 102.58910 * 13 12 11 15 15 O 1.21275 * 120.00052 * 359.72801 * 14 13 12 16 16 C 1.50700 * 120.00112 * 179.72283 * 14 13 12 17 17 O 1.42897 * 109.47354 * 180.02562 * 16 14 13 18 18 C 1.35893 * 117.00074 * 180.02562 * 17 16 14 19 19 C 1.38707 * 120.02909 * 359.72436 * 18 17 16 20 20 C 1.38382 * 119.96519 * 179.72055 * 19 18 17 21 21 F 1.35107 * 119.98192 * 180.29637 * 20 19 18 22 22 C 1.38456 * 120.03279 * 0.57850 * 20 19 18 23 23 C 1.38451 * 120.05801 * 359.67375 * 22 20 19 24 24 F 1.35099 * 119.98332 * 180.02562 * 23 22 20 25 25 C 1.38384 * 120.03125 * 0.04534 * 23 22 20 26 26 C 1.43619 * 120.05798 * 282.31663 * 13 12 11 27 27 C 1.48853 * 118.94106 * 139.35878 * 9 7 2 28 28 H 0.97000 * 119.99986 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.76544 * 33.24800 * 10 9 7 30 30 H 1.08999 * 109.76065 * 153.96770 * 10 9 7 31 31 H 1.08998 * 109.00804 * 42.27782 * 11 10 9 32 32 H 1.09003 * 109.00583 * 161.13698 * 11 10 9 33 33 H 1.08992 * 109.40144 * 298.22735 * 12 11 10 34 34 H 1.09008 * 109.52669 * 178.59083 * 12 11 10 35 35 H 1.09000 * 109.46846 * 60.00425 * 16 14 13 36 36 H 1.09000 * 109.46979 * 300.00510 * 16 14 13 37 37 H 1.08002 * 120.01633 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.96801 * 179.70457 * 22 20 19 39 39 H 1.07994 * 120.01253 * 179.97438 * 25 23 22 40 40 H 1.08997 * 108.87555 * 211.69522 * 26 13 12 41 41 H 1.08997 * 108.87495 * 330.23762 * 26 13 12 42 42 H 1.08998 * 109.48226 * 20.63700 * 27 9 7 43 43 H 1.08997 * 109.48912 * 260.60311 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3805 2.1140 -1.3936 5 1 1.5112 2.6160 0.8139 6 1 3.6015 1.4092 0.5795 7 6 2.0103 -1.2022 0.0005 8 1 1.5399 -2.0971 0.3802 9 7 3.2915 -1.2533 -0.4802 10 6 3.6185 -0.5128 -1.6647 11 6 3.2854 -1.3929 -2.8812 12 6 4.3245 -2.4151 -3.1209 13 7 4.4780 -3.2748 -1.9233 14 6 3.9362 -4.5087 -1.9064 15 8 3.3192 -4.9134 -2.8689 16 6 4.0972 -5.3858 -0.6915 17 8 3.4402 -6.6349 -0.9153 18 6 3.4901 -7.5471 0.0907 19 6 4.1626 -7.2479 1.2663 20 6 4.2077 -8.1757 2.2921 21 9 4.8575 -7.8823 3.4397 22 6 3.5921 -9.4066 2.1408 23 6 2.9249 -9.7085 0.9658 24 9 2.3243 -10.9098 0.8199 25 6 2.8733 -8.7804 -0.0594 26 6 5.2085 -2.7963 -0.7831 27 6 4.3000 -2.0750 0.2432 28 1 -0.4850 0.8400 -0.0004 29 1 3.0297 0.4038 -1.7007 30 1 4.6808 -0.2688 -1.6652 31 1 2.3304 -1.8895 -2.7093 32 1 3.2021 -0.7602 -3.7649 33 1 5.2732 -1.9235 -3.3360 34 1 4.0393 -3.0317 -3.9734 35 1 3.6551 -4.8923 0.1740 36 1 5.1572 -5.5610 -0.5078 37 1 4.6473 -6.2899 1.3827 38 1 3.6320 -10.1317 2.9402 39 1 2.3532 -9.0164 -0.9760 40 1 5.6913 -3.6419 -0.2934 41 1 5.9759 -2.1007 -1.1226 42 1 3.7908 -2.8148 0.8608 43 1 4.9084 -1.4295 0.8765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989757000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:12 Heat of formation + Delta-G solvation = -91.572083 kcal Electronic energy + Delta-G solvation = -29999.543572 eV Core-core repulsion = 25489.856745 eV Total energy + Delta-G solvation = -4509.686827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.31355 -49.29155 -40.69338 -39.68175 -37.59750 -36.91341 -34.57682 -32.81464 -31.63096 -30.94909 -30.44331 -28.68466 -27.72569 -25.68567 -23.82200 -23.30627 -23.16723 -21.93946 -20.20321 -19.19722 -19.02221 -17.60733 -17.21743 -16.74251 -16.66077 -16.65097 -16.46753 -16.10210 -15.92596 -15.74713 -15.58615 -15.25669 -14.84139 -14.60576 -14.40958 -13.95877 -13.70985 -13.32616 -13.10388 -12.96256 -12.63705 -12.49050 -12.35623 -12.20597 -12.17031 -11.90395 -11.70862 -11.45235 -11.15628 -10.97929 -10.72060 -10.55573 -10.22365 -9.89373 -9.72606 -9.55698 -9.15296 -8.74092 -8.58253 -8.38737 -6.85396 -6.07518 -3.51139 0.61373 0.77667 2.32247 2.73024 3.05013 3.24631 3.36326 3.40273 3.44008 3.65414 4.05738 4.41940 4.44734 4.50306 4.54378 4.57818 4.69607 4.83374 4.88998 4.97611 5.13989 5.29157 5.35512 5.43443 5.49654 5.59158 5.61813 5.66233 5.74675 5.75665 5.79245 5.98329 6.21857 6.26706 6.30576 6.32620 6.46769 6.65989 6.78550 6.92397 7.10739 7.57471 8.02602 8.29735 8.31398 8.95122 9.63270 10.00609 11.07731 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.003010 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.372615 B = 9300.300371 C = 9875.175891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.042 3.958 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.276 4.276 8 H 0.073 0.927 9 N -0.601 5.601 10 C 0.153 3.847 11 C -0.167 4.167 12 C 0.132 3.868 13 N -0.582 5.582 14 C 0.524 3.476 15 O -0.525 6.525 16 C 0.038 3.962 17 O -0.276 6.276 18 C 0.197 3.803 19 C -0.258 4.258 20 C 0.174 3.826 21 F -0.127 7.127 22 C -0.234 4.234 23 C 0.171 3.829 24 F -0.125 7.125 25 C -0.197 4.197 26 C 0.086 3.914 27 C 0.122 3.878 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.334 -13.775 1.232 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.160 4.160 3 Si 0.707 3.293 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.195 1.195 7 C -0.405 4.405 8 H 0.090 0.910 9 N -0.324 5.324 10 C 0.026 3.974 11 C -0.207 4.207 12 C 0.012 3.988 13 N -0.315 5.315 14 C 0.310 3.690 15 O -0.400 6.400 16 C -0.040 4.040 17 O -0.186 6.186 18 C 0.149 3.851 19 C -0.278 4.278 20 C 0.154 3.846 21 F -0.105 7.105 22 C -0.253 4.253 23 C 0.152 3.848 24 F -0.104 7.104 25 C -0.217 4.217 26 C -0.040 4.040 27 C -0.004 4.004 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.773 -13.932 0.564 18.909 hybrid contribution 0.456 1.146 0.577 1.362 sum 13.229 -12.786 1.141 18.433 Atomic orbital electron populations 1.69901 1.06126 1.26847 1.50443 1.25514 0.94988 0.97807 0.97658 0.86938 0.80641 0.84755 0.77002 1.21335 1.22838 1.19522 1.18696 0.87293 0.94276 1.40236 0.90976 1.43839 1.07690 1.55563 1.25338 1.20665 0.96905 0.94015 0.85832 1.21838 1.00808 0.98363 0.99729 1.20784 0.99150 0.92154 0.86750 1.47262 1.53805 1.13718 1.16717 1.19675 0.79445 0.82068 0.87813 1.90716 1.39870 1.73425 1.36012 1.22764 0.98412 0.83451 0.99366 1.86204 1.71289 1.23940 1.37213 1.18268 0.91712 0.88750 0.86326 1.21279 1.09360 1.02781 0.94394 1.16852 0.92788 0.92870 0.82085 1.91555 1.78473 1.93495 1.46980 1.20871 1.06047 0.98578 0.99838 1.16742 0.93626 0.81113 0.93355 1.91552 1.80874 1.42009 1.95930 1.20314 1.07426 0.92257 1.01694 1.21940 0.94837 0.99106 0.88089 1.22207 0.91288 0.94257 0.92636 0.92621 0.92966 0.94592 0.90091 0.92258 0.91698 0.89935 0.87871 0.88865 0.83237 0.83294 0.82885 0.91268 0.90673 0.92354 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.97 55.49 0.78 -25.88 16 2 C 0.04 1.16 5.24 -17.43 -0.09 1.07 16 3 Si 0.88 21.27 25.29 -169.99 -4.30 16.97 16 4 H -0.29 -6.75 6.70 56.52 0.38 -6.37 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.28 -7.32 9.51 -15.06 -0.14 -7.47 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 N -0.60 -12.92 2.06 -171.99 -0.35 -13.28 16 10 C 0.15 3.03 4.58 -5.23 -0.02 3.01 16 11 C -0.17 -3.03 5.66 -28.87 -0.16 -3.19 16 12 C 0.13 2.00 5.74 -5.65 -0.03 1.97 16 13 N -0.58 -8.76 2.45 -176.34 -0.43 -9.19 16 14 C 0.52 8.61 7.75 -10.99 -0.09 8.52 16 15 O -0.52 -10.68 15.94 -14.35 -0.23 -10.91 16 16 C 0.04 0.48 3.77 36.01 0.14 0.62 16 17 O -0.28 -3.93 9.67 -39.31 -0.38 -4.31 16 18 C 0.20 2.35 6.68 -39.24 -0.26 2.09 16 19 C -0.26 -2.69 9.01 -39.35 -0.35 -3.05 16 20 C 0.17 1.77 7.30 -39.45 -0.29 1.49 16 21 F -0.13 -1.33 17.27 2.25 0.04 -1.29 16 22 C -0.23 -2.23 10.00 -39.42 -0.39 -2.62 16 23 C 0.17 1.77 7.30 -39.45 -0.29 1.48 16 24 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 25 C -0.20 -2.20 9.96 -39.36 -0.39 -2.59 16 26 C 0.09 1.08 5.05 -4.57 -0.02 1.05 16 27 C 0.12 2.01 6.85 -1.75 -0.01 2.00 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.05 1.17 3.52 -51.93 -0.18 0.99 16 30 H 0.04 0.61 7.59 -51.93 -0.39 0.22 16 31 H 0.08 1.82 7.91 -51.93 -0.41 1.41 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.08 1.30 7.13 -51.92 -0.37 0.93 16 35 H 0.10 1.26 6.85 -51.93 -0.36 0.91 16 36 H 0.09 0.84 6.87 -51.93 -0.36 0.48 16 37 H 0.15 1.30 6.30 -52.49 -0.33 0.97 16 38 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.07 0.62 6.38 -51.93 -0.33 0.29 16 41 H 0.07 0.83 7.72 -51.93 -0.40 0.43 16 42 H 0.06 0.95 7.18 -51.93 -0.37 0.58 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -32.73 353.48 -7.13 -39.86 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.20 Total: -0.40 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.42 Total: 4.38 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.01 Total: -48.35 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.61 Total: -15.22 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.08 Total: -2.56 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.30 Total: 16.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.73 -7.13 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989757000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.715 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds