Wall clock time and date at job start Sat Apr 11 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00242 * 2 1 4 4 H 1.48510 * 109.46841 * 275.54610 * 3 2 1 5 5 H 1.48500 * 109.47256 * 35.54183 * 3 2 1 6 6 H 1.48504 * 109.47551 * 155.54751 * 3 2 1 7 7 C 1.38814 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00001 * 336.07921 * 7 2 1 9 9 N 1.36938 * 120.00253 * 156.08305 * 7 2 1 10 10 C 1.43468 * 118.93476 * 319.37765 * 9 7 2 11 11 C 1.53795 * 107.95926 * 273.63242 * 10 9 7 12 12 C 1.47720 * 111.83626 * 281.59977 * 11 10 9 13 13 N 1.48218 * 110.06641 * 58.37084 * 12 11 10 14 14 C 1.34774 * 119.97129 * 102.58910 * 13 12 11 15 15 O 1.21275 * 120.00052 * 359.72801 * 14 13 12 16 16 C 1.50700 * 120.00112 * 179.72283 * 14 13 12 17 17 O 1.42897 * 109.47354 * 180.02562 * 16 14 13 18 18 C 1.35893 * 117.00074 * 180.02562 * 17 16 14 19 19 C 1.38707 * 120.02909 * 359.72436 * 18 17 16 20 20 C 1.38382 * 119.96519 * 179.72055 * 19 18 17 21 21 F 1.35107 * 119.98192 * 180.29637 * 20 19 18 22 22 C 1.38456 * 120.03279 * 0.57850 * 20 19 18 23 23 C 1.38451 * 120.05801 * 359.67375 * 22 20 19 24 24 F 1.35099 * 119.98332 * 180.02562 * 23 22 20 25 25 C 1.38384 * 120.03125 * 0.04534 * 23 22 20 26 26 C 1.43619 * 120.05798 * 282.31663 * 13 12 11 27 27 C 1.48853 * 118.94106 * 139.35878 * 9 7 2 28 28 H 0.97000 * 119.99986 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.76544 * 33.24800 * 10 9 7 30 30 H 1.08999 * 109.76065 * 153.96770 * 10 9 7 31 31 H 1.08998 * 109.00804 * 42.27782 * 11 10 9 32 32 H 1.09003 * 109.00583 * 161.13698 * 11 10 9 33 33 H 1.08992 * 109.40144 * 298.22735 * 12 11 10 34 34 H 1.09008 * 109.52669 * 178.59083 * 12 11 10 35 35 H 1.09000 * 109.46846 * 60.00425 * 16 14 13 36 36 H 1.09000 * 109.46979 * 300.00510 * 16 14 13 37 37 H 1.08002 * 120.01633 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.96801 * 179.70457 * 22 20 19 39 39 H 1.07994 * 120.01253 * 179.97438 * 25 23 22 40 40 H 1.08997 * 108.87555 * 211.69522 * 26 13 12 41 41 H 1.08997 * 108.87495 * 330.23762 * 26 13 12 42 42 H 1.08998 * 109.48226 * 20.63700 * 27 9 7 43 43 H 1.08997 * 109.48912 * 260.60311 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3805 2.1140 -1.3936 5 1 1.5112 2.6160 0.8139 6 1 3.6015 1.4092 0.5795 7 6 2.0103 -1.2022 0.0005 8 1 1.5399 -2.0971 0.3802 9 7 3.2915 -1.2533 -0.4802 10 6 3.6185 -0.5128 -1.6647 11 6 3.2854 -1.3929 -2.8812 12 6 4.3245 -2.4151 -3.1209 13 7 4.4780 -3.2748 -1.9233 14 6 3.9362 -4.5087 -1.9064 15 8 3.3192 -4.9134 -2.8689 16 6 4.0972 -5.3858 -0.6915 17 8 3.4402 -6.6349 -0.9153 18 6 3.4901 -7.5471 0.0907 19 6 4.1626 -7.2479 1.2663 20 6 4.2077 -8.1757 2.2921 21 9 4.8575 -7.8823 3.4397 22 6 3.5921 -9.4066 2.1408 23 6 2.9249 -9.7085 0.9658 24 9 2.3243 -10.9098 0.8199 25 6 2.8733 -8.7804 -0.0594 26 6 5.2085 -2.7963 -0.7831 27 6 4.3000 -2.0750 0.2432 28 1 -0.4850 0.8400 -0.0004 29 1 3.0297 0.4038 -1.7007 30 1 4.6808 -0.2688 -1.6652 31 1 2.3304 -1.8895 -2.7093 32 1 3.2021 -0.7602 -3.7649 33 1 5.2732 -1.9235 -3.3360 34 1 4.0393 -3.0317 -3.9734 35 1 3.6551 -4.8923 0.1740 36 1 5.1572 -5.5610 -0.5078 37 1 4.6473 -6.2899 1.3827 38 1 3.6320 -10.1317 2.9402 39 1 2.3532 -9.0164 -0.9760 40 1 5.6913 -3.6419 -0.2934 41 1 5.9759 -2.1007 -1.1226 42 1 3.7908 -2.8148 0.8608 43 1 4.9084 -1.4295 0.8765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989757000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:11 Heat of formation + Delta-G solvation = -111.520444 kcal Electronic energy + Delta-G solvation = -30000.408597 eV Core-core repulsion = 25489.856745 eV Total energy + Delta-G solvation = -4510.551853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.13144 -50.09432 -41.74158 -40.78619 -38.84530 -38.03873 -36.10135 -34.18161 -33.55417 -31.81562 -31.28196 -29.83858 -29.10227 -27.09751 -25.47562 -24.27467 -24.06056 -23.10023 -21.80185 -20.16558 -20.08909 -18.66999 -18.55887 -18.24375 -17.65237 -17.56494 -17.44104 -17.24907 -16.97674 -16.78196 -16.70891 -16.39635 -16.02049 -15.70197 -15.41484 -15.25773 -15.12970 -14.77086 -14.71133 -14.28938 -13.84487 -13.75889 -13.49261 -13.38804 -13.15913 -12.98296 -12.83568 -12.76929 -12.62965 -12.37683 -12.12189 -11.90662 -11.85337 -11.60900 -11.48635 -10.85957 -10.59429 -9.96714 -9.67296 -9.58497 -8.63730 -8.19792 -5.58375 -0.20493 -0.04907 1.30269 1.32858 1.42662 1.53573 1.54871 2.22242 2.34408 2.43470 2.81380 3.05978 3.20113 3.37017 3.50017 3.68631 3.72338 3.80018 3.89751 3.99359 4.06150 4.09999 4.17270 4.21673 4.37528 4.51273 4.65209 4.68504 4.69993 4.77265 4.83220 4.88437 4.92871 4.96268 5.03921 5.12345 5.17669 5.42949 5.47558 5.67081 5.98061 6.01999 6.17537 6.42451 7.08110 7.10562 7.70466 8.04622 9.00563 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.003010 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.372615 B = 9300.300371 C = 9875.175891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.021 4.021 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.314 1.314 6 H -0.248 1.248 7 C -0.258 4.258 8 H 0.025 0.975 9 N -0.613 5.613 10 C 0.146 3.854 11 C -0.156 4.156 12 C 0.132 3.868 13 N -0.582 5.582 14 C 0.512 3.488 15 O -0.578 6.578 16 C 0.041 3.959 17 O -0.305 6.305 18 C 0.181 3.819 19 C -0.251 4.251 20 C 0.169 3.831 21 F -0.126 7.126 22 C -0.223 4.223 23 C 0.168 3.832 24 F -0.127 7.127 25 C -0.206 4.206 26 C 0.087 3.913 27 C 0.114 3.886 28 H 0.261 0.739 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.140 0.860 37 H 0.170 0.830 38 H 0.170 0.830 39 H 0.151 0.849 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.050 0.950 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.606 -13.542 2.032 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.218 4.218 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.243 1.243 6 H -0.172 1.172 7 C -0.388 4.388 8 H 0.042 0.958 9 N -0.337 5.337 10 C 0.020 3.980 11 C -0.196 4.196 12 C 0.011 3.989 13 N -0.313 5.313 14 C 0.300 3.700 15 O -0.457 6.457 16 C -0.036 4.036 17 O -0.217 6.217 18 C 0.134 3.866 19 C -0.271 4.271 20 C 0.150 3.850 21 F -0.104 7.104 22 C -0.243 4.243 23 C 0.148 3.852 24 F -0.105 7.105 25 C -0.226 4.226 26 C -0.038 4.038 27 C -0.010 4.010 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.158 0.842 37 H 0.187 0.813 38 H 0.188 0.812 39 H 0.169 0.831 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.069 0.931 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.124 -13.707 1.384 21.978 hybrid contribution -0.908 0.933 0.334 1.344 sum 16.216 -12.774 1.717 20.714 Atomic orbital electron populations 1.70065 1.08217 1.27423 1.53913 1.26190 0.95494 1.01627 0.98456 0.85761 0.79699 0.79618 0.77162 1.20389 1.24293 1.17164 1.18541 0.89606 0.92433 1.38249 0.95764 1.43973 1.06931 1.56410 1.26398 1.20780 0.98917 0.92858 0.85435 1.21706 0.98947 0.98887 1.00093 1.20800 1.00126 0.91288 0.86713 1.47422 1.53306 1.13191 1.17401 1.20444 0.78455 0.82858 0.88271 1.90686 1.42134 1.74690 1.38221 1.22838 1.01008 0.82604 0.97129 1.86161 1.72286 1.24696 1.38528 1.18337 0.92988 0.88629 0.86668 1.21432 1.08524 1.03553 0.93567 1.16877 0.93030 0.93053 0.82089 1.91560 1.78476 1.93505 1.46900 1.21083 1.04612 0.98759 0.99804 1.16737 0.94008 0.80955 0.93513 1.91548 1.80975 1.42044 1.95966 1.20433 1.07500 0.92578 1.02067 1.22119 0.93896 1.01263 0.86491 1.22476 0.90790 0.93974 0.93802 0.93038 0.95726 0.90083 0.96049 0.90564 0.87036 0.91180 0.87579 0.84231 0.81269 0.81214 0.83132 0.86684 0.87501 0.93132 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.73 13.97 21.65 0.30 -59.43 16 2 C -0.02 -1.21 5.24 84.86 0.44 -0.77 16 3 Si 0.95 44.34 25.29 68.60 1.74 46.07 16 4 H -0.28 -12.38 6.70 99.48 0.67 -11.71 16 5 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 6 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.26 -14.05 9.51 84.03 0.80 -13.25 16 8 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 9 N -0.61 -25.48 2.06 -698.06 -1.44 -26.92 16 10 C 0.15 5.44 4.58 87.21 0.40 5.83 16 11 C -0.16 -5.52 5.66 29.21 0.17 -5.35 16 12 C 0.13 3.66 5.74 84.40 0.48 4.15 16 13 N -0.58 -15.89 2.45 -830.21 -2.03 -17.92 16 14 C 0.51 16.32 7.75 87.66 0.68 17.00 16 15 O -0.58 -24.17 15.94 16.02 0.26 -23.92 16 16 C 0.04 0.97 3.77 71.24 0.27 1.24 16 17 O -0.30 -8.60 9.67 -73.31 -0.71 -9.31 16 18 C 0.18 4.17 6.68 22.49 0.15 4.32 16 19 C -0.25 -4.69 9.01 22.42 0.20 -4.48 16 20 C 0.17 3.07 7.30 22.36 0.16 3.24 16 21 F -0.13 -2.31 17.27 44.97 0.78 -1.53 16 22 C -0.22 -3.82 10.00 22.37 0.22 -3.60 16 23 C 0.17 3.30 7.30 22.36 0.16 3.47 16 24 F -0.13 -2.56 17.27 44.97 0.78 -1.78 16 25 C -0.21 -4.58 9.96 22.42 0.22 -4.35 16 26 C 0.09 1.71 5.05 87.56 0.44 2.16 16 27 C 0.11 3.36 6.85 86.57 0.59 3.95 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.02 1.06 3.52 -2.39 -0.01 1.05 16 30 H 0.08 2.32 7.59 -2.39 -0.02 2.30 16 31 H 0.02 0.98 7.91 -2.39 -0.02 0.96 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.11 2.13 8.05 -2.39 -0.02 2.11 16 34 H 0.07 2.15 7.13 -2.38 -0.02 2.14 16 35 H 0.11 2.41 6.85 -2.39 -0.02 2.39 16 36 H 0.14 1.88 6.87 -2.39 -0.02 1.86 16 37 H 0.17 2.35 6.30 -2.91 -0.02 2.33 16 38 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 40 H 0.12 1.30 6.38 -2.39 -0.02 1.29 16 41 H 0.11 1.57 7.72 -2.39 -0.02 1.55 16 42 H 0.05 1.55 7.18 -2.39 -0.02 1.53 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -78.26 353.48 6.08 -72.17 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.02 Total: 9.03 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 5.40 Total: 13.54 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -3.17 Total: -104.27 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.45 Total: -33.23 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 1.55 Total: -3.32 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.74 Total: 46.07 kcal Total: -78.26 6.08 -72.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989757000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.349 kcal (2) G-P(sol) polarization free energy of solvation -78.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds