Wall clock time and date at job start Sat Apr 11 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48494 * 109.47401 * 239.99836 * 3 2 1 5 5 H 1.48499 * 109.47368 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46487 * 120.00334 * 3 2 1 7 7 C 1.38816 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99289 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.47374 * 125.58002 * 0.02562 * 9 7 2 11 11 C 1.56216 * 104.46717 * 205.31830 * 10 9 7 12 12 C 1.54915 * 101.15585 * 321.88953 * 11 10 9 13 13 N 1.46498 * 112.33249 * 274.86306 * 12 11 10 14 14 C 1.34771 * 120.00149 * 295.64058 * 13 12 11 15 15 O 1.21610 * 119.99999 * 0.02562 * 14 13 12 16 16 C 1.47375 * 120.00141 * 180.02562 * 14 13 12 17 17 C 1.36422 * 127.19279 * 0.12496 * 16 14 13 18 18 O 1.33647 * 108.39811 * 180.26637 * 17 16 14 19 19 C 1.34221 * 110.90928 * 359.75100 * 18 17 16 20 20 C 1.50699 * 125.43737 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.47102 * 120.04601 * 20 19 18 22 22 F 1.39902 * 109.46972 * 240.04375 * 20 19 18 23 23 C 1.34179 * 109.12156 * 0.02562 * 19 18 17 24 24 C 1.53586 * 109.57545 * 149.38623 * 12 11 10 25 25 C 1.54171 * 106.69761 * 247.54954 * 24 12 11 26 26 C 1.54759 * 104.36836 * 24.13086 * 25 24 12 27 27 C 1.46978 * 125.57945 * 180.02562 * 9 7 2 28 28 H 1.08994 * 111.81270 * 300.95911 * 27 9 7 29 29 H 0.97001 * 120.00233 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.37000 * 323.51100 * 10 9 7 31 31 H 1.09005 * 110.36581 * 85.72620 * 10 9 7 32 32 H 1.08993 * 110.32565 * 204.37289 * 11 10 9 33 33 H 1.09005 * 112.19159 * 80.20917 * 11 10 9 34 34 H 0.97006 * 119.99708 * 115.63874 * 13 12 11 35 35 H 1.07999 * 125.79658 * 0.02562 * 17 16 14 36 36 H 1.08995 * 109.47178 * 0.03923 * 20 19 18 37 37 H 1.08002 * 127.01820 * 179.97438 * 23 19 18 38 38 H 1.09006 * 110.01849 * 6.00532 * 24 12 11 39 39 H 1.09000 * 110.01901 * 127.39940 * 24 12 11 40 40 H 1.09004 * 109.98725 * 265.59732 * 25 24 12 41 41 H 1.09000 * 110.92076 * 143.13468 * 25 24 12 42 42 H 1.09004 * 110.67103 * 204.24103 * 26 25 24 43 43 H 1.08998 * 110.81302 * 81.17050 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1412 -2.5313 -0.0005 11 6 -0.3967 -3.9301 0.6463 12 6 0.7720 -4.7540 0.0503 13 7 0.4510 -5.3005 -1.2705 14 6 -0.5361 -6.2086 -1.4023 15 8 -1.1607 -6.5739 -0.4249 16 6 -0.8587 -6.7588 -2.7308 17 6 -0.2558 -6.4573 -3.9169 18 8 -0.8469 -7.1668 -4.8830 19 6 -1.8237 -7.9386 -4.3811 20 6 -2.6999 -8.8687 -5.1800 21 9 -2.5370 -10.1777 -4.7142 22 9 -4.0380 -8.4861 -5.0374 23 6 -1.8960 -7.7490 -3.0548 24 6 1.1915 -5.8463 1.0451 25 6 2.6047 -5.4769 1.5386 26 6 2.6977 -3.9467 1.3267 27 6 1.9332 -3.7264 -0.0005 28 1 2.5746 -3.8799 -0.8683 29 1 -0.4850 0.8400 0.0004 30 1 -0.5987 -1.7506 0.6071 31 1 -0.5262 -2.4924 -1.0196 32 1 -1.3587 -4.3271 0.3224 33 1 -0.3362 -3.8979 1.7342 34 1 0.9490 -5.0088 -2.0502 35 1 0.5581 -5.7604 -4.0526 36 1 -2.4181 -8.8195 -6.2317 37 1 -2.5794 -8.2239 -2.3664 38 1 0.5065 -5.8619 1.8929 39 1 1.1974 -6.8181 0.5517 40 1 3.3552 -5.9915 0.9387 41 1 2.7256 -5.7241 2.5933 42 1 3.7374 -3.6344 1.2284 43 1 2.2124 -3.4124 2.1434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992136000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:24 Heat of formation + Delta-G solvation = -87.194931 kcal Electronic energy + Delta-G solvation = -30014.469783 eV Core-core repulsion = 25504.972764 eV Total energy + Delta-G solvation = -4509.497019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.49050 -47.49494 -42.94539 -40.12869 -38.01985 -34.29546 -33.66354 -33.15841 -31.70011 -31.22001 -29.67421 -26.78187 -26.61140 -25.90644 -23.94428 -23.77416 -21.53654 -20.98630 -20.04533 -19.74062 -18.86071 -18.44364 -17.85068 -17.67553 -17.05946 -16.53469 -16.35486 -16.17471 -15.65490 -14.99593 -14.58441 -14.36913 -14.35061 -13.99401 -13.84487 -13.57027 -13.52114 -13.40546 -13.13782 -12.94590 -12.80088 -12.23248 -11.87500 -11.78820 -11.65757 -11.18075 -11.02407 -10.87587 -10.72767 -10.57168 -10.23048 -10.16226 -10.10317 -10.00743 -9.82638 -9.67414 -9.48204 -9.27814 -8.69962 -8.60801 -6.90228 -5.67912 -3.11767 0.98899 1.55308 1.98186 3.17012 3.36880 3.40267 3.41765 3.43068 3.49185 3.73703 4.14473 4.37652 4.44120 4.47556 4.60194 4.81603 5.12809 5.16547 5.21995 5.29640 5.45893 5.48435 5.61250 5.77111 5.82755 5.86880 5.96293 6.03763 6.12068 6.20904 6.31185 6.37338 6.46241 6.51145 6.55957 6.74188 6.74494 6.94715 7.07071 7.50205 7.60191 7.71242 7.84389 8.32998 8.39605 9.17614 9.78583 10.42552 11.34257 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.002824 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.910223 B = 9911.839462 C =10852.528673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.153 3.847 11 C -0.142 4.142 12 C 0.161 3.839 13 N -0.699 5.699 14 C 0.585 3.415 15 O -0.529 6.529 16 C -0.229 4.229 17 C 0.047 3.953 18 O -0.159 6.159 19 C -0.116 4.116 20 C 0.364 3.636 21 F -0.185 7.185 22 F -0.184 7.184 23 C -0.094 4.094 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.129 4.129 27 C 0.163 3.837 28 H 0.045 0.955 29 H 0.253 0.747 30 H 0.107 0.893 31 H 0.012 0.988 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.396 0.604 35 H 0.222 0.778 36 H 0.133 0.867 37 H 0.167 0.833 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 -16.788 -9.328 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.182 4.182 12 C 0.075 3.925 13 N -0.349 5.349 14 C 0.371 3.629 15 O -0.407 6.407 16 C -0.233 4.233 17 C -0.024 4.024 18 O -0.054 6.054 19 C -0.165 4.165 20 C 0.310 3.690 21 F -0.166 7.166 22 F -0.165 7.165 23 C -0.114 4.114 24 C -0.150 4.150 25 C -0.162 4.162 26 C -0.170 4.170 27 C 0.055 3.945 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.030 0.970 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.230 0.770 35 H 0.238 0.762 36 H 0.150 0.850 37 H 0.184 0.816 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.033 -16.807 -8.916 19.054 hybrid contribution 0.646 1.032 -0.217 1.237 sum -0.387 -15.775 -9.133 18.232 Atomic orbital electron populations 1.69792 1.04874 1.24899 1.57245 1.24787 0.95672 0.97688 1.02343 0.86175 0.78401 0.83170 0.77856 1.21285 1.21629 1.21162 1.18982 0.90411 0.82297 1.43400 0.90559 1.44502 1.01836 0.99132 1.86484 1.22228 0.84272 0.92887 0.97792 1.23561 0.96618 0.98117 0.99883 1.21692 0.96943 0.92529 0.81296 1.45750 1.35923 1.42507 1.10702 1.17081 0.80051 0.79090 0.86676 1.90787 1.50713 1.60122 1.39031 1.21706 1.02177 1.04621 0.94842 1.24709 0.97543 0.95136 0.85023 1.83661 1.39427 1.44960 1.37392 1.22331 0.97556 1.02662 0.93909 1.19001 0.76562 0.75379 0.98060 1.93074 1.95316 1.37025 1.91188 1.93084 1.35123 1.91097 1.97190 1.22665 0.98086 0.96660 0.93973 1.22245 0.96750 0.97515 0.98455 1.22346 0.96387 0.97224 1.00260 1.22910 1.00364 0.93928 0.99752 1.21765 0.91491 0.85830 0.95455 0.93796 0.93658 0.87506 0.97019 0.91666 0.91109 0.76979 0.76156 0.85000 0.81590 0.91192 0.92134 0.92446 0.92124 0.92283 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.13 10.07 55.49 0.56 -25.57 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -5.84 10.03 -15.06 -0.15 -6.00 16 8 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.60 -14.18 3.06 -160.29 -0.49 -14.67 16 10 C 0.15 3.64 5.96 -1.84 -0.01 3.63 16 11 C -0.14 -2.87 5.85 -24.00 -0.14 -3.01 16 12 C 0.16 2.81 0.71 -129.37 -0.09 2.72 16 13 N -0.70 -10.57 5.22 -46.43 -0.24 -10.81 16 14 C 0.58 9.19 6.96 -12.54 -0.09 9.10 16 15 O -0.53 -10.03 14.86 5.27 0.08 -9.95 16 16 C -0.23 -2.93 6.31 -103.28 -0.65 -3.58 16 17 C 0.05 0.45 11.61 30.08 0.35 0.80 16 18 O -0.16 -1.54 10.52 7.65 0.08 -1.46 16 19 C -0.12 -1.17 6.72 -35.74 -0.24 -1.41 16 20 C 0.36 2.82 5.75 36.01 0.21 3.02 16 21 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 22 F -0.18 -1.75 17.32 2.25 0.04 -1.71 16 23 C -0.09 -1.14 10.90 -37.45 -0.41 -1.55 16 24 C -0.11 -1.77 5.24 -25.82 -0.14 -1.90 16 25 C -0.12 -1.80 6.82 -25.19 -0.17 -1.97 16 26 C -0.13 -2.26 6.27 -24.89 -0.16 -2.41 16 27 C 0.16 3.11 3.59 -65.62 -0.24 2.87 16 28 H 0.04 0.81 7.99 -51.93 -0.42 0.40 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.11 2.91 5.83 -51.93 -0.30 2.61 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 1.35 6.82 -51.93 -0.35 0.99 16 33 H 0.07 1.43 7.65 -51.93 -0.40 1.03 16 34 H 0.40 5.01 7.47 -40.82 -0.31 4.71 16 35 H 0.22 1.31 7.47 -52.49 -0.39 0.91 16 36 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.07 1.16 7.41 -51.93 -0.38 0.78 16 39 H 0.06 0.95 7.40 -51.93 -0.38 0.57 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -31.90 358.53 -7.02 -38.92 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.44 Total: 5.11 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.02 Total: -0.04 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.18 Total: -51.05 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.16 Total: -11.41 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.08 Total: -3.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.90 -7.02 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992136000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.273 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds