Wall clock time and date at job start Sat Apr 11 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47078 * 274.78037 * 3 2 1 5 5 H 1.48498 * 109.47297 * 34.78502 * 3 2 1 6 6 H 1.48504 * 109.46882 * 154.78492 * 3 2 1 7 7 C 1.38814 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99597 * 187.94903 * 7 2 1 9 9 N 1.36930 * 120.00006 * 7.94574 * 7 2 1 10 10 C 1.49294 * 127.10533 * 8.14899 * 9 7 2 11 11 C 1.56229 * 106.51065 * 171.30199 * 10 9 7 12 12 C 1.52131 * 100.80821 * 336.55328 * 11 10 9 13 13 N 1.46502 * 111.08649 * 286.04144 * 12 11 10 14 14 C 1.34768 * 120.00090 * 288.30159 * 13 12 11 15 15 O 1.21699 * 120.00517 * 0.02562 * 14 13 12 16 16 C 1.46665 * 120.00175 * 179.97438 * 14 13 12 17 17 C 1.36540 * 125.99102 * 179.71682 * 16 14 13 18 18 C 1.40362 * 106.70867 * 179.90909 * 17 16 14 19 19 C 1.35133 * 107.11442 * 0.35301 * 18 17 16 20 20 C 1.50698 * 125.61300 * 179.77819 * 19 18 17 21 21 F 1.39902 * 109.47407 * 300.02268 * 20 19 18 22 22 F 1.39896 * 109.46999 * 60.03035 * 20 19 18 23 23 O 1.33929 * 108.76723 * 359.78076 * 19 18 17 24 24 C 1.51399 * 122.08943 * 151.19482 * 12 11 10 25 25 C 1.55692 * 104.52236 * 218.69904 * 24 12 11 26 26 C 1.56274 * 106.00074 * 7.29809 * 25 24 12 27 27 C 1.42714 * 127.10436 * 188.11186 * 9 7 2 28 28 H 1.08996 * 108.17503 * 104.16246 * 27 9 7 29 29 H 0.97001 * 119.99691 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.05166 * 290.56937 * 10 9 7 31 31 H 1.09005 * 110.04838 * 52.04440 * 10 9 7 32 32 H 1.09001 * 111.14826 * 94.44004 * 11 10 9 33 33 H 1.09002 * 111.15643 * 218.62402 * 11 10 9 34 34 H 0.97004 * 119.99743 * 108.30192 * 13 12 11 35 35 H 1.08005 * 126.64529 * 0.04019 * 17 16 14 36 36 H 1.08002 * 126.44124 * 180.15467 * 18 17 16 37 37 H 1.09003 * 109.46662 * 180.02562 * 20 19 18 38 38 H 1.09003 * 110.44033 * 99.94917 * 24 12 11 39 39 H 1.08998 * 110.46228 * 337.45984 * 24 12 11 40 40 H 1.09002 * 110.15692 * 248.14627 * 25 24 12 41 41 H 1.08996 * 110.15963 * 126.45452 * 25 24 12 42 42 H 1.09001 * 110.97686 * 142.33341 * 26 25 24 43 43 H 1.08997 * 110.97543 * 266.11000 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3966 2.1048 -1.3952 5 1 1.5019 2.6214 0.7987 6 1 3.5946 1.4131 0.5965 7 6 2.0102 -1.2022 -0.0005 8 1 3.0825 -1.2067 0.1288 9 7 1.3354 -2.3823 -0.1650 10 6 -0.1041 -2.5545 -0.5215 11 6 -0.3127 -4.0770 -0.8029 12 6 1.1051 -4.4981 -1.1592 13 7 1.4763 -4.0229 -2.4944 14 6 0.9269 -4.5880 -3.5876 15 8 0.1221 -5.4927 -3.4658 16 6 1.2981 -4.1119 -4.9242 17 6 0.8238 -4.5970 -6.1092 18 6 1.4417 -3.8527 -7.1262 19 6 2.2617 -2.9625 -6.5253 20 6 3.1332 -1.9563 -7.2318 21 9 4.0346 -2.6250 -8.0671 22 9 2.3325 -1.1025 -7.9981 23 8 2.1725 -3.1217 -5.1985 24 6 1.6141 -5.9018 -0.9087 25 6 3.0837 -5.7052 -0.4338 26 6 3.2773 -4.1645 -0.2584 27 6 1.8630 -3.7016 -0.0317 28 1 1.5202 -4.1104 0.9187 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7352 -2.2380 0.3089 31 1 -0.3403 -1.9739 -1.4133 32 1 -0.6653 -4.5969 0.0879 33 1 -0.9922 -4.2327 -1.6409 34 1 2.1175 -3.3016 -2.5915 35 1 0.1097 -5.3969 -6.2387 36 1 1.2924 -3.9716 -8.1892 37 1 3.6851 -1.3728 -6.4949 38 1 1.5868 -6.4864 -1.8283 39 1 1.0250 -6.3876 -0.1308 40 1 3.7754 -6.0876 -1.1844 41 1 3.2426 -6.2144 0.5168 42 1 3.9027 -3.9458 0.6071 43 1 3.6937 -3.7183 -1.1615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992454425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:32 Heat of formation + Delta-G solvation = -75.601021 kcal Electronic energy + Delta-G solvation = -30797.981585 eV Core-core repulsion = 26288.987316 eV Total energy + Delta-G solvation = -4508.994270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.40019 -47.40228 -42.92825 -40.53784 -38.18418 -34.51430 -33.67422 -33.03476 -31.90123 -31.22661 -29.91696 -27.02881 -26.90188 -25.72487 -24.13381 -22.98411 -21.89593 -20.72769 -20.50942 -19.72981 -18.91868 -18.61504 -17.76377 -17.63508 -17.35912 -16.53580 -16.34417 -15.87556 -14.90154 -14.77686 -14.59804 -14.37693 -14.24638 -13.98498 -13.90527 -13.75521 -13.54904 -13.36121 -13.20458 -13.18749 -12.68554 -12.41809 -12.03822 -11.61051 -11.50716 -11.47610 -11.09138 -10.95094 -10.89627 -10.63225 -10.36573 -10.30328 -10.12815 -10.10653 -10.00120 -9.76249 -9.34089 -9.06210 -8.71687 -8.65164 -6.92548 -5.83454 -3.17897 0.77929 2.00752 2.03899 3.20475 3.30321 3.32960 3.38721 3.41199 3.63099 3.87780 4.28085 4.38194 4.52707 4.58086 4.62988 4.84057 5.14552 5.15378 5.34563 5.39717 5.43810 5.52393 5.56478 5.64816 5.73250 5.82959 5.90343 6.04519 6.06515 6.13890 6.20778 6.29209 6.33158 6.41001 6.49164 6.58538 6.72695 6.79774 6.99080 7.39443 7.53028 7.68088 7.77437 8.11158 8.31847 9.04679 9.72145 10.41062 11.30161 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.004604 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.195416 B = 6080.186119 C = 7972.120375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.001 4.001 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.583 5.583 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.126 3.874 13 N -0.672 5.672 14 C 0.597 3.403 15 O -0.522 6.522 16 C -0.031 4.031 17 C -0.137 4.137 18 C -0.159 4.159 19 C -0.086 4.086 20 C 0.360 3.640 21 F -0.185 7.185 22 F -0.183 7.183 23 O -0.141 6.141 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.115 4.115 27 C 0.160 3.840 28 H 0.026 0.974 29 H 0.254 0.746 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.409 0.591 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -8.975 -10.909 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.199 4.199 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.306 5.306 10 C 0.054 3.946 11 C -0.178 4.178 12 C 0.039 3.961 13 N -0.322 5.322 14 C 0.381 3.619 15 O -0.400 6.400 16 C -0.084 4.084 17 C -0.157 4.157 18 C -0.178 4.178 19 C -0.138 4.138 20 C 0.306 3.694 21 F -0.166 7.166 22 F -0.164 7.164 23 O -0.036 6.036 24 C -0.151 4.151 25 C -0.156 4.156 26 C -0.154 4.154 27 C 0.050 3.950 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.246 0.754 35 H 0.185 0.815 36 H 0.179 0.821 37 H 0.153 0.847 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.125 -9.148 -10.541 14.868 hybrid contribution 0.528 1.280 -0.386 1.437 sum 5.653 -7.868 -10.927 14.604 Atomic orbital electron populations 1.69930 1.05003 1.25350 1.55737 1.24814 0.95555 0.97771 1.01733 0.86171 0.78777 0.83713 0.77514 1.21627 1.21715 1.20541 1.18990 0.90834 0.82488 1.44086 0.90294 1.43655 1.06661 0.99241 1.81076 1.21954 0.84589 0.88496 0.99514 1.22802 0.94668 0.99465 1.00818 1.21722 0.97396 0.94434 0.82576 1.45686 1.44330 1.37324 1.04828 1.16507 0.81553 0.82648 0.81202 1.90858 1.34213 1.29928 1.85032 1.22664 0.96410 0.92582 0.96787 1.21960 1.02042 1.01948 0.89798 1.21663 0.98170 0.96635 1.01338 1.22793 1.05264 1.03488 0.82287 1.19094 0.81740 0.83556 0.85049 1.93063 1.67252 1.82094 1.74196 1.93074 1.75313 1.70214 1.77807 1.84023 1.51015 1.45510 1.23076 1.21910 0.95867 0.95701 1.01575 1.22826 0.96150 0.95943 1.00637 1.21844 0.97438 0.94501 1.01600 1.20838 0.92502 0.87410 0.94248 0.95729 0.93594 0.92960 0.93753 0.91097 0.91335 0.75449 0.81511 0.82071 0.84681 0.91181 0.90734 0.92203 0.91750 0.91510 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.92 10.80 55.49 0.60 -25.33 16 2 C 0.00 -0.03 5.45 -17.43 -0.10 -0.13 16 3 Si 0.91 21.19 29.56 -169.99 -5.03 16.17 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.24 -6.10 10.26 -15.06 -0.15 -6.26 16 8 H 0.08 1.97 7.84 -52.48 -0.41 1.56 16 9 N -0.58 -13.68 3.12 -162.67 -0.51 -14.19 16 10 C 0.18 4.15 5.28 -0.76 0.00 4.14 16 11 C -0.14 -2.65 6.19 -25.44 -0.16 -2.80 16 12 C 0.13 2.20 0.40 -130.62 -0.05 2.15 16 13 N -0.67 -11.57 4.39 -47.79 -0.21 -11.78 16 14 C 0.60 10.11 7.11 -12.86 -0.09 10.02 16 15 O -0.52 -9.70 15.02 5.19 0.08 -9.62 16 16 C -0.03 -0.47 7.13 -36.79 -0.26 -0.73 16 17 C -0.14 -1.77 10.62 -39.40 -0.42 -2.19 16 18 C -0.16 -1.83 10.77 -39.89 -0.43 -2.26 16 19 C -0.09 -1.04 6.75 -35.41 -0.24 -1.28 16 20 C 0.36 3.52 5.76 36.00 0.21 3.73 16 21 F -0.18 -1.89 17.32 2.25 0.04 -1.85 16 22 F -0.18 -2.02 17.32 2.25 0.04 -1.98 16 23 O -0.14 -2.02 10.40 4.99 0.05 -1.97 16 24 C -0.11 -1.67 6.05 -26.10 -0.16 -1.83 16 25 C -0.12 -1.57 6.93 -23.54 -0.16 -1.73 16 26 C -0.12 -1.83 6.47 -26.21 -0.17 -2.00 16 27 C 0.16 3.08 2.64 -68.71 -0.18 2.89 16 28 H 0.03 0.51 7.94 -51.93 -0.41 0.09 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.05 1.35 7.51 -51.93 -0.39 0.96 16 31 H 0.04 1.14 7.76 -51.93 -0.40 0.74 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.33 7.18 -51.93 -0.37 0.96 16 34 H 0.41 7.20 7.56 -40.82 -0.31 6.89 16 35 H 0.17 1.91 8.06 -52.48 -0.42 1.48 16 36 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.08 6.87 -51.93 -0.36 0.73 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.03 7.38 -51.93 -0.38 0.65 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -29.74 360.38 -7.43 -37.17 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.55 Total: 6.22 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.37 Total: 1.72 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.12 Total: -51.29 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.13 Total: -11.59 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.08 Total: -3.84 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.74 -7.43 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992454425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.429 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds