Wall clock time and date at job start Sat Apr 11 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47078 * 274.78037 * 3 2 1 5 5 H 1.48498 * 109.47297 * 34.78502 * 3 2 1 6 6 H 1.48504 * 109.46882 * 154.78492 * 3 2 1 7 7 C 1.38814 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99597 * 187.94903 * 7 2 1 9 9 N 1.36930 * 120.00006 * 7.94574 * 7 2 1 10 10 C 1.49294 * 127.10533 * 8.14899 * 9 7 2 11 11 C 1.56229 * 106.51065 * 171.30199 * 10 9 7 12 12 C 1.52131 * 100.80821 * 336.55328 * 11 10 9 13 13 N 1.46502 * 111.08649 * 286.04144 * 12 11 10 14 14 C 1.34768 * 120.00090 * 288.30159 * 13 12 11 15 15 O 1.21699 * 120.00517 * 0.02562 * 14 13 12 16 16 C 1.46665 * 120.00175 * 179.97438 * 14 13 12 17 17 C 1.36540 * 125.99102 * 179.71682 * 16 14 13 18 18 C 1.40362 * 106.70867 * 179.90909 * 17 16 14 19 19 C 1.35133 * 107.11442 * 0.35301 * 18 17 16 20 20 C 1.50698 * 125.61300 * 179.77819 * 19 18 17 21 21 F 1.39902 * 109.47407 * 300.02268 * 20 19 18 22 22 F 1.39896 * 109.46999 * 60.03035 * 20 19 18 23 23 O 1.33929 * 108.76723 * 359.78076 * 19 18 17 24 24 C 1.51399 * 122.08943 * 151.19482 * 12 11 10 25 25 C 1.55692 * 104.52236 * 218.69904 * 24 12 11 26 26 C 1.56274 * 106.00074 * 7.29809 * 25 24 12 27 27 C 1.42714 * 127.10436 * 188.11186 * 9 7 2 28 28 H 1.08996 * 108.17503 * 104.16246 * 27 9 7 29 29 H 0.97001 * 119.99691 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.05166 * 290.56937 * 10 9 7 31 31 H 1.09005 * 110.04838 * 52.04440 * 10 9 7 32 32 H 1.09001 * 111.14826 * 94.44004 * 11 10 9 33 33 H 1.09002 * 111.15643 * 218.62402 * 11 10 9 34 34 H 0.97004 * 119.99743 * 108.30192 * 13 12 11 35 35 H 1.08005 * 126.64529 * 0.04019 * 17 16 14 36 36 H 1.08002 * 126.44124 * 180.15467 * 18 17 16 37 37 H 1.09003 * 109.46662 * 180.02562 * 20 19 18 38 38 H 1.09003 * 110.44033 * 99.94917 * 24 12 11 39 39 H 1.08998 * 110.46228 * 337.45984 * 24 12 11 40 40 H 1.09002 * 110.15692 * 248.14627 * 25 24 12 41 41 H 1.08996 * 110.15963 * 126.45452 * 25 24 12 42 42 H 1.09001 * 110.97686 * 142.33341 * 26 25 24 43 43 H 1.08997 * 110.97543 * 266.11000 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3966 2.1048 -1.3952 5 1 1.5019 2.6214 0.7987 6 1 3.5946 1.4131 0.5965 7 6 2.0102 -1.2022 -0.0005 8 1 3.0825 -1.2067 0.1288 9 7 1.3354 -2.3823 -0.1650 10 6 -0.1041 -2.5545 -0.5215 11 6 -0.3127 -4.0770 -0.8029 12 6 1.1051 -4.4981 -1.1592 13 7 1.4763 -4.0229 -2.4944 14 6 0.9269 -4.5880 -3.5876 15 8 0.1221 -5.4927 -3.4658 16 6 1.2981 -4.1119 -4.9242 17 6 0.8238 -4.5970 -6.1092 18 6 1.4417 -3.8527 -7.1262 19 6 2.2617 -2.9625 -6.5253 20 6 3.1332 -1.9563 -7.2318 21 9 4.0346 -2.6250 -8.0671 22 9 2.3325 -1.1025 -7.9981 23 8 2.1725 -3.1217 -5.1985 24 6 1.6141 -5.9018 -0.9087 25 6 3.0837 -5.7052 -0.4338 26 6 3.2773 -4.1645 -0.2584 27 6 1.8630 -3.7016 -0.0317 28 1 1.5202 -4.1104 0.9187 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7352 -2.2380 0.3089 31 1 -0.3403 -1.9739 -1.4133 32 1 -0.6653 -4.5969 0.0879 33 1 -0.9922 -4.2327 -1.6409 34 1 2.1175 -3.3016 -2.5915 35 1 0.1097 -5.3969 -6.2387 36 1 1.2924 -3.9716 -8.1892 37 1 3.6851 -1.3728 -6.4949 38 1 1.5868 -6.4864 -1.8283 39 1 1.0250 -6.3876 -0.1308 40 1 3.7754 -6.0876 -1.1844 41 1 3.2426 -6.2144 0.5168 42 1 3.9027 -3.9458 0.6071 43 1 3.6937 -3.7183 -1.1615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992454425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:32 Heat of formation + Delta-G solvation = -92.737237 kcal Electronic energy + Delta-G solvation = -30798.724667 eV Core-core repulsion = 26288.987316 eV Total energy + Delta-G solvation = -4509.737352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.21161 -48.21587 -43.96116 -41.96898 -39.58394 -36.19305 -34.82885 -34.24335 -33.64995 -32.37861 -31.47353 -28.57886 -28.01173 -27.05954 -25.96231 -24.11819 -22.90852 -22.24601 -21.71189 -21.26100 -20.26850 -19.76154 -18.61085 -18.58286 -18.35713 -18.24306 -17.45622 -17.39252 -16.49353 -16.16878 -15.89864 -15.82458 -15.73072 -15.11217 -14.98049 -14.85786 -14.57019 -14.42460 -14.22343 -14.15625 -14.07891 -14.05741 -13.61875 -13.07846 -13.02731 -12.83617 -12.66350 -12.42258 -12.25784 -12.13111 -12.06712 -11.85293 -11.60846 -11.44777 -11.34518 -11.28611 -10.90677 -10.67751 -10.24095 -9.91668 -8.87521 -7.87547 -5.22516 -0.30463 1.01358 1.05875 1.47138 1.47225 1.56493 1.96329 2.07260 2.49158 2.75160 2.98684 3.04515 3.33016 3.49715 3.68355 3.69202 3.78917 3.81808 3.85701 4.07153 4.23735 4.33663 4.37858 4.40006 4.40843 4.53419 4.59809 4.66863 4.77143 4.91642 4.93058 5.03964 5.09560 5.10584 5.20265 5.26778 5.40491 5.45336 5.55316 5.58875 5.64145 5.69246 6.16078 6.42374 6.97523 7.02352 7.75047 8.47628 9.25942 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.004604 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.195416 B = 6080.186119 C = 7972.120375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.061 4.061 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.233 4.233 8 H 0.089 0.911 9 N -0.597 5.597 10 C 0.191 3.809 11 C -0.127 4.127 12 C 0.135 3.865 13 N -0.676 5.676 14 C 0.599 3.401 15 O -0.543 6.543 16 C -0.065 4.065 17 C -0.124 4.124 18 C -0.159 4.159 19 C -0.087 4.087 20 C 0.364 3.636 21 F -0.185 7.185 22 F -0.189 7.189 23 O -0.154 6.154 24 C -0.107 4.107 25 C -0.104 4.104 26 C -0.111 4.111 27 C 0.148 3.852 28 H 0.021 0.979 29 H 0.246 0.754 30 H 0.017 0.983 31 H 0.007 0.993 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.181 0.819 36 H 0.190 0.810 37 H 0.164 0.836 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.623 -10.225 -11.896 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.188 1.188 7 C -0.362 4.362 8 H 0.106 0.894 9 N -0.320 5.320 10 C 0.066 3.934 11 C -0.166 4.166 12 C 0.047 3.953 13 N -0.325 5.325 14 C 0.385 3.615 15 O -0.424 6.424 16 C -0.118 4.118 17 C -0.144 4.144 18 C -0.178 4.178 19 C -0.140 4.140 20 C 0.310 3.690 21 F -0.166 7.166 22 F -0.170 7.170 23 O -0.049 6.049 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.150 4.150 27 C 0.039 3.961 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.242 0.758 35 H 0.198 0.802 36 H 0.207 0.793 37 H 0.181 0.819 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.209 -10.437 -11.531 17.142 hybrid contribution -0.122 1.652 -0.138 1.662 sum 7.087 -8.785 -11.669 16.235 Atomic orbital electron populations 1.70136 1.06516 1.25304 1.57879 1.25593 0.96268 1.00963 1.02656 0.85172 0.78073 0.79656 0.77141 1.21609 1.22809 1.18840 1.19378 0.91399 0.83400 1.41981 0.89351 1.43780 1.06817 1.00473 1.80919 1.21625 0.84510 0.90856 0.96397 1.22660 0.96190 0.96451 1.01324 1.21691 0.95402 0.95844 0.82317 1.45696 1.44445 1.37381 1.04950 1.16659 0.80946 0.82175 0.81762 1.90830 1.35056 1.30865 1.85613 1.22387 0.98595 0.94393 0.96423 1.22258 1.01197 1.01561 0.89413 1.22027 0.97451 0.95891 1.02447 1.23397 1.05198 1.03696 0.81666 1.19324 0.81384 0.83109 0.85193 1.93064 1.67082 1.82200 1.74273 1.93064 1.75662 1.70286 1.78031 1.83991 1.51147 1.45541 1.24263 1.21923 0.97080 0.93572 1.02008 1.22766 0.95135 0.93913 1.02344 1.21862 0.95063 0.96257 1.01769 1.21068 0.95249 0.85228 0.94599 0.96140 0.94532 0.96501 0.97424 0.89470 0.91912 0.75825 0.80205 0.79317 0.81875 0.91375 0.89451 0.90456 0.89510 0.90865 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.19 10.80 21.65 0.23 -55.96 16 2 C -0.06 -3.35 5.45 84.86 0.46 -2.89 16 3 Si 0.97 44.17 29.56 68.60 2.03 46.20 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.23 -12.15 10.26 84.04 0.86 -11.28 16 8 H 0.09 4.35 7.84 -2.91 -0.02 4.33 16 9 N -0.60 -28.52 3.12 -668.57 -2.09 -30.60 16 10 C 0.19 9.29 5.28 86.96 0.46 9.75 16 11 C -0.13 -4.94 6.19 31.43 0.19 -4.74 16 12 C 0.13 4.62 0.40 4.38 0.00 4.62 16 13 N -0.68 -23.18 4.39 -423.34 -1.86 -25.04 16 14 C 0.60 20.20 7.11 86.44 0.61 20.81 16 15 O -0.54 -20.02 15.02 -4.35 -0.07 -20.09 16 16 C -0.07 -1.93 7.13 24.07 0.17 -1.76 16 17 C -0.12 -3.03 10.62 22.39 0.24 -2.80 16 18 C -0.16 -3.33 10.77 22.07 0.24 -3.09 16 19 C -0.09 -1.97 6.75 24.97 0.17 -1.80 16 20 C 0.36 6.33 5.76 71.24 0.41 6.74 16 21 F -0.19 -3.36 17.32 44.97 0.78 -2.58 16 22 F -0.19 -3.82 17.32 44.97 0.78 -3.04 16 23 O -0.15 -4.28 10.40 -5.04 -0.05 -4.33 16 24 C -0.11 -2.96 6.05 31.00 0.19 -2.77 16 25 C -0.10 -2.43 6.93 32.66 0.23 -2.20 16 26 C -0.11 -3.30 6.47 30.93 0.20 -3.10 16 27 C 0.15 5.56 2.64 46.47 0.12 5.68 16 28 H 0.02 0.82 7.94 -2.39 -0.02 0.81 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 30 H 0.02 0.92 7.51 -2.39 -0.02 0.90 16 31 H 0.01 0.41 7.76 -2.38 -0.02 0.39 16 32 H 0.09 3.06 8.14 -2.39 -0.02 3.05 16 33 H 0.06 2.50 7.18 -2.39 -0.02 2.48 16 34 H 0.41 14.36 7.56 -92.71 -0.70 13.66 16 35 H 0.18 3.82 8.06 -2.91 -0.02 3.79 16 36 H 0.19 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 1.95 6.87 -2.39 -0.02 1.93 16 39 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 1.88 7.38 -2.39 -0.02 1.86 16 Total: -1.00 -66.18 360.38 4.67 -61.51 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.36 Total: 22.75 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 4.56 Total: 11.18 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -3.71 Total: -111.60 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.12 Total: -24.42 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 1.56 Total: -5.62 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -66.18 4.67 -61.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992454425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.230 kcal (2) G-P(sol) polarization free energy of solvation -66.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds