Wall clock time and date at job start Sat Apr 11 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48501 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47205 * 300.00123 * 3 2 1 6 6 H 1.48498 * 109.46620 * 60.00488 * 3 2 1 7 7 C 1.38813 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00654 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.49297 * 127.10257 * 359.97438 * 9 7 2 11 11 C 1.56988 * 106.43513 * 188.35838 * 10 9 7 12 12 C 1.52126 * 100.46544 * 23.90580 * 11 10 9 13 13 N 1.46503 * 111.08540 * 73.53023 * 12 11 10 14 14 C 1.34782 * 119.99882 * 71.69349 * 13 12 11 15 15 O 1.21692 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.46651 * 119.99494 * 179.97438 * 14 13 12 17 17 C 1.36545 * 125.98500 * 180.02562 * 16 14 13 18 18 C 1.40365 * 106.71279 * 180.02562 * 17 16 14 19 19 C 1.35133 * 107.11092 * 359.97438 * 18 17 16 20 20 C 1.50707 * 125.61753 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.46795 * 209.97525 * 20 19 18 22 22 F 1.39896 * 109.46747 * 329.97149 * 20 19 18 23 23 O 1.33934 * 108.76922 * 359.97438 * 19 18 17 24 24 C 1.51230 * 122.55019 * 208.20647 * 12 11 10 25 25 C 1.55049 * 104.91720 * 140.89889 * 24 12 11 26 26 C 1.56286 * 105.91790 * 353.32604 * 25 24 12 27 27 C 1.42716 * 127.10444 * 180.02562 * 9 7 2 28 28 H 1.08997 * 108.17515 * 256.54587 * 27 9 7 29 29 H 0.96997 * 120.00255 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.04874 * 307.92865 * 10 9 7 31 31 H 1.08998 * 110.04667 * 69.40640 * 10 9 7 32 32 H 1.08997 * 111.67535 * 265.98041 * 11 10 9 33 33 H 1.09005 * 110.93854 * 141.52519 * 11 10 9 34 34 H 0.96996 * 119.99583 * 251.68903 * 13 12 11 35 35 H 1.08004 * 126.64457 * 0.05056 * 17 16 14 36 36 H 1.07995 * 126.44653 * 179.97438 * 18 17 16 37 37 H 1.08994 * 109.46738 * 89.97367 * 20 19 18 38 38 H 1.09007 * 110.40505 * 260.23544 * 24 12 11 39 39 H 1.08999 * 110.40781 * 22.66978 * 24 12 11 40 40 H 1.08996 * 110.48445 * 234.04824 * 25 24 12 41 41 H 1.09003 * 109.90885 * 112.30331 * 25 24 12 42 42 H 1.09000 * 110.97026 * 217.24106 * 26 25 24 43 43 H 1.09002 * 110.96468 * 93.47686 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1559 -2.5727 -0.0018 11 6 -0.4124 -4.1061 0.2157 12 6 0.8805 -4.5068 0.9099 13 7 0.9082 -4.0232 2.2926 14 6 0.1155 -4.5930 3.2218 15 8 -0.6236 -5.5089 2.9122 16 6 0.1437 -4.1092 4.6059 17 6 -0.6032 -4.5946 5.6408 18 6 -0.2585 -3.8425 6.7748 19 6 0.6723 -2.9428 6.3874 20 6 1.3322 -1.9231 7.2796 21 9 1.6693 -0.7933 6.5265 22 9 0.4494 -1.5564 8.3010 23 8 0.9127 -3.1072 5.0801 24 6 1.4598 -5.9002 0.8098 25 6 2.9916 -5.6885 0.6972 26 6 3.2025 -4.1455 0.5655 27 6 1.8809 -3.7028 -0.0018 28 1 1.7920 -4.1093 -1.0092 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6045 -1.9950 0.8064 31 1 -0.5712 -2.2606 -0.9600 32 1 -0.5301 -4.6329 -0.7312 33 1 -1.2737 -4.2689 0.8638 34 1 1.4971 -3.2930 2.5392 35 1 -1.3200 -5.4012 5.5958 36 1 -0.6614 -3.9607 7.7698 37 1 2.2345 -2.3517 7.7156 38 1 1.2147 -6.4786 1.7006 39 1 1.0899 -6.4022 -0.0842 40 1 3.3833 -6.1976 -0.1834 41 1 3.4847 -6.0597 1.5957 42 1 4.0179 -3.9205 -0.1220 43 1 3.3798 -3.6915 1.5405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992454428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:51 Heat of formation + Delta-G solvation = -74.386598 kcal Electronic energy + Delta-G solvation = -30986.864151 eV Core-core repulsion = 26477.922543 eV Total energy + Delta-G solvation = -4508.941608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 4.56 seconds Orbital eigenvalues (eV) -49.32664 -47.34399 -42.86489 -40.50470 -38.13333 -34.49486 -33.64139 -32.98298 -31.83641 -31.19391 -29.87640 -27.00485 -26.85224 -25.66058 -24.10927 -22.85919 -21.88832 -20.66631 -20.45036 -19.69380 -18.86269 -18.56502 -17.99993 -17.38626 -17.28235 -16.51592 -16.27066 -15.83585 -14.87291 -14.72659 -14.52257 -14.35099 -14.21027 -13.96321 -13.92987 -13.68063 -13.50834 -13.23899 -13.13325 -12.98228 -12.66798 -12.38162 -11.97277 -11.73558 -11.46546 -11.43923 -11.03885 -10.96025 -10.86142 -10.59283 -10.32750 -10.25504 -10.07280 -10.05452 -9.90770 -9.72975 -9.30497 -8.97330 -8.70448 -8.58524 -6.91109 -5.77887 -3.13076 0.84500 2.02306 2.17640 3.25194 3.36409 3.37326 3.42764 3.45456 3.57566 3.84195 4.39595 4.41793 4.51302 4.56964 4.67511 4.89927 5.18163 5.18779 5.37833 5.44669 5.47996 5.54664 5.60491 5.68628 5.74897 5.88566 5.93271 6.08227 6.09334 6.16947 6.23345 6.31939 6.36339 6.43800 6.54487 6.63627 6.75894 6.83123 7.03827 7.46627 7.56182 7.74168 7.83866 8.15509 8.37945 9.09592 9.76255 10.43959 11.34410 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.005025 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.530875 B = 5571.346936 C = 7651.371597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.585 5.585 10 C 0.177 3.823 11 C -0.140 4.140 12 C 0.128 3.872 13 N -0.672 5.672 14 C 0.597 3.403 15 O -0.524 6.524 16 C -0.035 4.035 17 C -0.137 4.137 18 C -0.168 4.168 19 C -0.083 4.083 20 C 0.363 3.637 21 F -0.185 7.185 22 F -0.185 7.185 23 O -0.136 6.136 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.117 4.117 27 C 0.160 3.840 28 H 0.026 0.974 29 H 0.253 0.747 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.410 0.590 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 -10.267 12.542 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.308 5.308 10 C 0.053 3.947 11 C -0.179 4.179 12 C 0.040 3.960 13 N -0.321 5.321 14 C 0.381 3.619 15 O -0.403 6.403 16 C -0.088 4.088 17 C -0.157 4.157 18 C -0.187 4.187 19 C -0.136 4.136 20 C 0.309 3.691 21 F -0.166 7.166 22 F -0.166 7.166 23 O -0.031 6.031 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.155 4.155 27 C 0.050 3.950 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.247 0.753 35 H 0.184 0.816 36 H 0.181 0.819 37 H 0.157 0.843 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.982 -10.408 12.074 16.217 hybrid contribution 0.400 1.416 0.248 1.492 sum 3.382 -8.992 12.323 15.625 Atomic orbital electron populations 1.69913 1.04935 1.25149 1.56366 1.24799 0.95626 0.97707 1.01829 0.86096 0.78778 0.83903 0.77280 1.20462 1.21743 1.21696 1.19042 0.90302 0.82157 1.44577 0.90189 1.43700 1.01725 0.99277 1.86124 1.22183 0.83237 0.88298 1.00933 1.22939 0.96060 0.99632 0.99227 1.21656 0.99197 0.94270 0.80867 1.45705 1.41334 1.36504 1.08559 1.16499 0.81237 0.82729 0.81406 1.90847 1.40752 1.29481 1.79209 1.22683 0.97459 0.92553 0.96125 1.21938 1.01327 1.02024 0.90451 1.21573 0.98913 0.97069 1.01157 1.23072 1.03952 1.02641 0.83950 1.19565 0.90149 0.80036 0.79381 1.93110 1.92639 1.53853 1.76984 1.93054 1.72102 1.92176 1.59262 1.84093 1.52853 1.44604 1.21551 1.21769 0.94990 0.95872 1.02430 1.22718 0.95720 0.95979 1.01109 1.21867 0.97963 0.94509 1.01181 1.20844 0.91485 0.87394 0.95296 0.95696 0.93664 0.91604 0.94517 0.91216 0.91347 0.75349 0.81559 0.81903 0.84287 0.91140 0.90903 0.91740 0.92276 0.91587 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.42 10.55 55.49 0.59 -25.84 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.15 10.28 -15.06 -0.15 -6.31 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.58 -14.03 3.10 -162.24 -0.50 -14.53 16 10 C 0.18 4.22 5.34 -0.33 0.00 4.22 16 11 C -0.14 -2.73 6.26 -25.02 -0.16 -2.89 16 12 C 0.13 2.29 0.42 -130.74 -0.05 2.24 16 13 N -0.67 -12.10 4.35 -47.91 -0.21 -12.30 16 14 C 0.60 10.50 7.09 -12.86 -0.09 10.41 16 15 O -0.52 -9.97 15.01 5.20 0.08 -9.89 16 16 C -0.03 -0.54 7.13 -36.80 -0.26 -0.81 16 17 C -0.14 -1.79 10.62 -39.39 -0.42 -2.21 16 18 C -0.17 -1.88 10.42 -39.89 -0.42 -2.29 16 19 C -0.08 -1.03 6.93 -35.41 -0.25 -1.28 16 20 C 0.36 3.59 5.82 36.01 0.21 3.79 16 21 F -0.18 -2.48 17.31 2.25 0.04 -2.45 16 22 F -0.18 -1.91 17.02 2.25 0.04 -1.87 16 23 O -0.14 -2.10 10.38 4.99 0.05 -2.05 16 24 C -0.11 -1.71 6.01 -26.54 -0.16 -1.87 16 25 C -0.12 -1.60 6.91 -23.88 -0.17 -1.76 16 26 C -0.12 -1.90 6.45 -26.22 -0.17 -2.07 16 27 C 0.16 3.14 2.61 -68.76 -0.18 2.96 16 28 H 0.03 0.52 7.98 -51.93 -0.41 0.10 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.07 1.77 7.05 -51.93 -0.37 1.40 16 31 H 0.04 0.95 7.98 -51.93 -0.41 0.54 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.37 7.17 -51.93 -0.37 1.00 16 34 H 0.41 7.72 7.55 -40.82 -0.31 7.41 16 35 H 0.17 1.92 8.06 -52.48 -0.42 1.49 16 36 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.11 6.84 -51.92 -0.36 0.75 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.09 7.37 -51.93 -0.38 0.71 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -30.96 359.45 -7.43 -38.39 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.54 Total: 6.41 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -2.36 Total: 1.97 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.13 Total: -52.67 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.13 Total: -11.95 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.08 Total: -4.31 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.96 -7.43 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992454428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.000 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.57 seconds