Wall clock time and date at job start Sat Apr 11 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48501 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47205 * 300.00123 * 3 2 1 6 6 H 1.48498 * 109.46620 * 60.00488 * 3 2 1 7 7 C 1.38813 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00654 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.49297 * 127.10257 * 359.97438 * 9 7 2 11 11 C 1.56988 * 106.43513 * 188.35838 * 10 9 7 12 12 C 1.52126 * 100.46544 * 23.90580 * 11 10 9 13 13 N 1.46503 * 111.08540 * 73.53023 * 12 11 10 14 14 C 1.34782 * 119.99882 * 71.69349 * 13 12 11 15 15 O 1.21692 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.46651 * 119.99494 * 179.97438 * 14 13 12 17 17 C 1.36545 * 125.98500 * 180.02562 * 16 14 13 18 18 C 1.40365 * 106.71279 * 180.02562 * 17 16 14 19 19 C 1.35133 * 107.11092 * 359.97438 * 18 17 16 20 20 C 1.50707 * 125.61753 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.46795 * 209.97525 * 20 19 18 22 22 F 1.39896 * 109.46747 * 329.97149 * 20 19 18 23 23 O 1.33934 * 108.76922 * 359.97438 * 19 18 17 24 24 C 1.51230 * 122.55019 * 208.20647 * 12 11 10 25 25 C 1.55049 * 104.91720 * 140.89889 * 24 12 11 26 26 C 1.56286 * 105.91790 * 353.32604 * 25 24 12 27 27 C 1.42716 * 127.10444 * 180.02562 * 9 7 2 28 28 H 1.08997 * 108.17515 * 256.54587 * 27 9 7 29 29 H 0.96997 * 120.00255 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.04874 * 307.92865 * 10 9 7 31 31 H 1.08998 * 110.04667 * 69.40640 * 10 9 7 32 32 H 1.08997 * 111.67535 * 265.98041 * 11 10 9 33 33 H 1.09005 * 110.93854 * 141.52519 * 11 10 9 34 34 H 0.96996 * 119.99583 * 251.68903 * 13 12 11 35 35 H 1.08004 * 126.64457 * 0.05056 * 17 16 14 36 36 H 1.07995 * 126.44653 * 179.97438 * 18 17 16 37 37 H 1.08994 * 109.46738 * 89.97367 * 20 19 18 38 38 H 1.09007 * 110.40505 * 260.23544 * 24 12 11 39 39 H 1.08999 * 110.40781 * 22.66978 * 24 12 11 40 40 H 1.08996 * 110.48445 * 234.04824 * 25 24 12 41 41 H 1.09003 * 109.90885 * 112.30331 * 25 24 12 42 42 H 1.09000 * 110.97026 * 217.24106 * 26 25 24 43 43 H 1.09002 * 110.96468 * 93.47686 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1559 -2.5727 -0.0018 11 6 -0.4124 -4.1061 0.2157 12 6 0.8805 -4.5068 0.9099 13 7 0.9082 -4.0232 2.2926 14 6 0.1155 -4.5930 3.2218 15 8 -0.6236 -5.5089 2.9122 16 6 0.1437 -4.1092 4.6059 17 6 -0.6032 -4.5946 5.6408 18 6 -0.2585 -3.8425 6.7748 19 6 0.6723 -2.9428 6.3874 20 6 1.3322 -1.9231 7.2796 21 9 1.6693 -0.7933 6.5265 22 9 0.4494 -1.5564 8.3010 23 8 0.9127 -3.1072 5.0801 24 6 1.4598 -5.9002 0.8098 25 6 2.9916 -5.6885 0.6972 26 6 3.2025 -4.1455 0.5655 27 6 1.8809 -3.7028 -0.0018 28 1 1.7920 -4.1093 -1.0092 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6045 -1.9950 0.8064 31 1 -0.5712 -2.2606 -0.9600 32 1 -0.5301 -4.6329 -0.7312 33 1 -1.2737 -4.2689 0.8638 34 1 1.4971 -3.2930 2.5392 35 1 -1.3200 -5.4012 5.5958 36 1 -0.6614 -3.9607 7.7698 37 1 2.2345 -2.3517 7.7156 38 1 1.2147 -6.4786 1.7006 39 1 1.0899 -6.4022 -0.0842 40 1 3.3833 -6.1976 -0.1834 41 1 3.4847 -6.0597 1.5957 42 1 4.0179 -3.9205 -0.1220 43 1 3.3798 -3.6915 1.5405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992454428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:50 Heat of formation + Delta-G solvation = -93.084904 kcal Electronic energy + Delta-G solvation = -30987.674970 eV Core-core repulsion = 26477.922543 eV Total energy + Delta-G solvation = -4509.752428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.17405 -48.21577 -43.91974 -41.96985 -39.56728 -36.21423 -34.81881 -34.22181 -33.62535 -32.36279 -31.46191 -28.59513 -27.98256 -27.01831 -25.98425 -24.01819 -22.90519 -22.24410 -21.65957 -21.26139 -20.24176 -19.73900 -18.82865 -18.47109 -18.34148 -18.16791 -17.45382 -17.35279 -16.49437 -16.16783 -15.86327 -15.85295 -15.70827 -15.15349 -14.99665 -14.85479 -14.57922 -14.36292 -14.17483 -14.12159 -14.08779 -13.87514 -13.57506 -13.07696 -13.01816 -12.88592 -12.69681 -12.56717 -12.24146 -12.12059 -12.05378 -11.83870 -11.61933 -11.42368 -11.33362 -11.24086 -10.87525 -10.74091 -10.19945 -9.85026 -8.90185 -7.86779 -5.22237 -0.26004 1.03203 1.20282 1.44831 1.45552 1.55092 1.98345 2.11458 2.47859 2.68606 3.02711 3.04706 3.33878 3.49622 3.70260 3.71251 3.81419 3.86157 3.88082 4.06418 4.22258 4.35509 4.40046 4.40843 4.43109 4.53764 4.59811 4.72455 4.77480 4.91002 4.93621 5.03502 5.09359 5.15195 5.20502 5.25214 5.46557 5.49204 5.52697 5.59396 5.64312 5.72583 6.15559 6.43031 6.98491 7.02444 7.74546 8.46071 9.25230 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.005025 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.530875 B = 5571.346936 C = 7651.371597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.063 4.063 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.298 1.298 7 C -0.229 4.229 8 H 0.089 0.911 9 N -0.599 5.599 10 C 0.188 3.812 11 C -0.128 4.128 12 C 0.135 3.865 13 N -0.678 5.678 14 C 0.598 3.402 15 O -0.544 6.544 16 C -0.075 4.075 17 C -0.122 4.122 18 C -0.159 4.159 19 C -0.088 4.088 20 C 0.361 3.639 21 F -0.209 7.209 22 F -0.186 7.186 23 O -0.160 6.160 24 C -0.107 4.107 25 C -0.103 4.103 26 C -0.113 4.113 27 C 0.147 3.853 28 H 0.026 0.974 29 H 0.244 0.756 30 H 0.026 0.974 31 H 0.004 0.996 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.404 0.596 35 H 0.181 0.819 36 H 0.199 0.801 37 H 0.195 0.805 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 -11.996 14.167 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.256 4.256 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.223 1.223 6 H -0.226 1.226 7 C -0.358 4.358 8 H 0.107 0.893 9 N -0.322 5.322 10 C 0.064 3.936 11 C -0.166 4.166 12 C 0.047 3.953 13 N -0.326 5.326 14 C 0.384 3.616 15 O -0.425 6.425 16 C -0.127 4.127 17 C -0.143 4.143 18 C -0.177 4.177 19 C -0.141 4.141 20 C 0.308 3.692 21 F -0.190 7.190 22 F -0.167 7.167 23 O -0.055 6.055 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.151 4.151 27 C 0.038 3.962 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.022 0.978 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.199 0.801 36 H 0.216 0.784 37 H 0.211 0.789 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.752 -12.179 13.702 18.938 hybrid contribution -0.181 1.944 -0.192 1.962 sum 4.571 -10.235 13.510 17.555 Atomic orbital electron populations 1.70132 1.06379 1.25045 1.58427 1.25570 0.96363 1.00856 1.02842 0.85118 0.78568 0.80013 0.76337 1.18532 1.22299 1.22552 1.19413 0.90866 0.83127 1.42388 0.89337 1.43819 1.01918 1.00509 1.85987 1.21846 0.83391 0.90801 0.97564 1.22793 0.96965 0.96507 1.00383 1.21664 0.97175 0.95802 0.80612 1.45742 1.41617 1.36497 1.08709 1.16691 0.80490 0.82280 0.82158 1.90814 1.41381 1.30354 1.79976 1.22433 0.99927 0.94517 0.95863 1.22279 1.00076 1.01614 0.90287 1.21958 0.97920 0.95824 1.02031 1.23804 1.03976 1.03162 0.83113 1.20218 0.91572 0.78685 0.78692 1.93062 1.92816 1.55279 1.77848 1.93051 1.72521 1.92135 1.58976 1.84059 1.53452 1.44901 1.23136 1.21776 0.96037 0.93658 1.03050 1.22659 0.94452 0.93763 1.03183 1.21883 0.96143 0.96453 1.00650 1.21088 0.94141 0.85186 0.95825 0.95651 0.94629 0.95571 0.97820 0.89255 0.92107 0.76084 0.80148 0.78385 0.78894 0.91356 0.89421 0.89267 0.90554 0.90785 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.48 10.55 21.65 0.23 -57.26 16 2 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 3 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 7 C -0.23 -12.30 10.28 84.03 0.86 -11.44 16 8 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.60 -29.43 3.10 -667.21 -2.07 -31.50 16 10 C 0.19 9.44 5.34 87.24 0.47 9.91 16 11 C -0.13 -5.08 6.26 31.71 0.20 -4.88 16 12 C 0.13 4.78 0.42 4.30 0.00 4.79 16 13 N -0.68 -24.70 4.35 -423.69 -1.84 -26.54 16 14 C 0.60 21.22 7.09 86.44 0.61 21.83 16 15 O -0.54 -20.72 15.01 -4.32 -0.06 -20.78 16 16 C -0.07 -2.34 7.13 24.07 0.17 -2.17 16 17 C -0.12 -3.02 10.62 22.39 0.24 -2.78 16 18 C -0.16 -3.14 10.42 22.07 0.23 -2.91 16 19 C -0.09 -2.03 6.93 24.97 0.17 -1.86 16 20 C 0.36 6.30 5.82 71.24 0.41 6.71 16 21 F -0.21 -5.44 17.31 44.97 0.78 -4.66 16 22 F -0.19 -3.36 17.02 44.97 0.77 -2.60 16 23 O -0.16 -4.90 10.38 -5.07 -0.05 -4.96 16 24 C -0.11 -3.01 6.01 30.72 0.18 -2.82 16 25 C -0.10 -2.46 6.91 32.44 0.22 -2.24 16 26 C -0.11 -3.47 6.45 30.92 0.20 -3.27 16 27 C 0.15 5.66 2.61 46.44 0.12 5.78 16 28 H 0.03 1.02 7.98 -2.39 -0.02 1.00 16 29 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.03 1.50 7.05 -2.39 -0.02 1.48 16 31 H 0.00 0.20 7.98 -2.39 -0.02 0.18 16 32 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.06 2.51 7.17 -2.38 -0.02 2.49 16 34 H 0.40 15.64 7.55 -92.71 -0.70 14.94 16 35 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.20 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.19 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 2.00 6.84 -2.38 -0.02 1.99 16 39 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 1.88 7.37 -2.39 -0.02 1.86 16 Total: -1.00 -70.79 359.45 4.69 -66.10 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.36 Total: 22.84 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 4.57 Total: 11.56 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -3.69 Total: -115.30 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.12 Total: -25.74 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 1.54 Total: -7.25 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -70.79 4.69 -66.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992454428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.986 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds