Wall clock time and date at job start Sat Apr 11 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.49644 * 34.99840 * 10 9 7 12 12 C 1.53038 * 109.50091 * 155.06253 * 10 9 7 13 13 C 1.53038 * 109.54199 * 181.31360 * 12 10 9 14 14 C 1.53198 * 109.31265 * 298.63895 * 13 12 10 15 15 N 1.46928 * 108.77528 * 54.63209 * 14 13 12 16 16 C 1.34772 * 120.62818 * 126.43452 * 15 14 13 17 17 O 1.21288 * 119.99538 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00492 * 359.97438 * 16 15 14 19 19 O 1.42894 * 109.47142 * 179.97438 * 18 16 15 20 20 C 1.35962 * 116.99614 * 179.97438 * 19 18 16 21 21 C 1.38637 * 120.04960 * 359.73031 * 20 19 18 22 22 C 1.38378 * 119.94427 * 179.79351 * 21 20 19 23 23 F 1.35097 * 119.98024 * 180.22859 * 22 21 20 24 24 C 1.38474 * 120.04620 * 0.45646 * 22 21 20 25 25 C 1.38249 * 120.09995 * 359.79229 * 24 22 21 26 26 C 1.38327 * 120.05008 * 359.97438 * 25 24 22 27 27 F 1.35098 * 120.02174 * 180.02562 * 26 25 24 28 28 C 1.46937 * 118.76292 * 306.41208 * 15 14 13 29 29 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.45957 * 301.33817 * 12 10 9 32 32 H 1.09002 * 109.45645 * 61.30660 * 12 10 9 33 33 H 1.08999 * 109.49542 * 58.58349 * 13 12 10 34 34 H 1.08994 * 109.50294 * 178.65422 * 13 12 10 35 35 H 1.09002 * 109.58764 * 174.41661 * 14 13 12 36 36 H 1.08998 * 109.58070 * 294.84542 * 14 13 12 37 37 H 1.08998 * 109.46966 * 300.00393 * 18 16 15 38 38 H 1.09003 * 109.46640 * 59.99769 * 18 16 15 39 39 H 1.08000 * 120.02781 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.95478 * 179.77315 * 24 22 21 41 41 H 1.07993 * 119.97532 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.55844 * 293.78539 * 28 15 14 43 43 H 1.08999 * 109.60997 * 173.36254 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9710 -3.5498 0.5903 12 6 1.1828 -4.7519 0.6188 13 6 1.9589 -6.0705 0.6492 14 6 2.3148 -6.4821 -0.7829 15 7 3.0320 -5.3744 -1.4289 16 6 4.2328 -5.5778 -2.0061 17 8 4.8147 -4.6552 -2.5366 18 6 4.8526 -6.9514 -1.9923 19 8 6.1144 -6.9113 -2.6618 20 6 6.8098 -8.0771 -2.7381 21 6 6.2910 -9.2331 -2.1755 22 6 6.9987 -10.4194 -2.2582 23 9 6.4917 -11.5473 -1.7142 24 6 8.2285 -10.4502 -2.8940 25 6 8.7500 -9.2975 -3.4512 26 6 8.0438 -8.1105 -3.3751 27 9 8.5538 -6.9844 -3.9203 28 6 2.4155 -4.0407 -1.4345 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0092 31 1 0.9070 -4.4693 1.6347 32 1 0.2812 -4.8752 0.0187 33 1 2.8733 -5.9411 1.2283 34 1 1.3438 -6.8443 1.1084 35 1 2.9516 -7.3665 -0.7614 36 1 1.4023 -6.6997 -1.3379 37 1 4.9979 -7.2741 -0.9614 38 1 4.1928 -7.6528 -2.5030 39 1 5.3336 -9.2086 -1.6764 40 1 8.7812 -11.3760 -2.9544 41 1 9.7095 -9.3237 -3.9462 42 1 1.5115 -4.0591 -2.0432 43 1 3.1185 -3.3144 -1.8425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000746567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:45 Heat of formation + Delta-G solvation = -116.029963 kcal Electronic energy + Delta-G solvation = -29001.814062 eV Core-core repulsion = 24491.066662 eV Total energy + Delta-G solvation = -4510.747400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.42617 -49.08766 -40.76683 -39.73296 -37.89340 -37.09927 -34.59206 -32.45539 -31.34827 -31.16199 -30.62685 -29.12462 -27.80351 -25.11817 -24.06955 -23.38792 -23.06305 -21.99397 -20.45960 -19.27298 -19.05956 -17.77851 -17.75708 -17.15121 -17.05424 -16.94759 -16.48038 -16.07151 -15.69699 -15.63458 -15.02507 -14.87120 -14.76378 -14.53656 -14.27566 -14.23104 -13.85131 -13.51564 -13.44735 -13.05750 -12.92689 -12.59112 -12.45739 -12.39783 -12.25330 -11.84219 -11.48166 -11.43005 -11.13043 -10.88968 -10.73836 -10.66620 -10.21063 -9.88355 -9.84095 -9.63690 -9.49693 -9.13364 -8.68058 -8.47726 -7.04568 -5.82059 -3.12188 0.41931 0.58006 2.17561 2.56071 2.85459 3.23969 3.43271 3.50021 3.52474 3.60640 3.73899 4.03285 4.23246 4.38380 4.41819 4.54429 4.58880 4.65061 4.75163 4.87962 4.95236 5.12368 5.25880 5.38261 5.41568 5.43163 5.47957 5.49196 5.56994 5.71421 5.82272 5.92570 6.04328 6.08020 6.12572 6.26207 6.39986 6.56902 6.71559 6.76107 6.92678 7.44897 7.69773 8.18176 8.36001 9.48131 10.00935 10.36041 11.40094 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.002359 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.017173 B =11864.425817 C =13198.656971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.104 3.896 15 N -0.602 5.602 16 C 0.512 3.488 17 O -0.514 6.514 18 C 0.038 3.962 19 O -0.273 6.273 20 C 0.132 3.868 21 C -0.224 4.224 22 C 0.132 3.868 23 F -0.131 7.131 24 C -0.165 4.165 25 C -0.086 4.086 26 C 0.064 3.936 27 F -0.123 7.123 28 C 0.094 3.906 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.064 0.936 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.521 -26.750 -3.406 29.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.019 4.019 15 N -0.338 5.338 16 C 0.297 3.703 17 O -0.388 6.388 18 C -0.041 4.041 19 O -0.184 6.184 20 C 0.084 3.916 21 C -0.244 4.244 22 C 0.112 3.888 23 F -0.110 7.110 24 C -0.184 4.184 25 C -0.105 4.105 26 C 0.044 3.956 27 F -0.101 7.101 28 C -0.030 4.030 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.083 0.917 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.988 -25.851 -3.755 28.742 hybrid contribution -0.174 0.686 0.132 0.720 sum 11.814 -25.165 -3.624 28.035 Atomic orbital electron populations 1.69671 1.05135 1.25724 1.57408 1.24757 0.95534 0.97817 1.02534 0.86112 0.79014 0.83904 0.77189 1.20371 1.21742 1.21812 1.19318 0.91154 0.83920 1.43080 0.90944 1.42384 1.05830 0.99563 1.88010 1.20495 0.95018 0.86535 0.92274 0.93047 1.21831 0.98715 0.93965 1.01993 1.21891 1.01133 0.98447 0.95468 1.21808 0.97194 0.88546 0.94354 1.48224 1.18348 1.11684 1.55512 1.19798 0.81679 0.89085 0.79777 1.90789 1.60923 1.43554 1.43550 1.22751 0.84355 0.98259 0.98686 1.86303 1.31507 1.27895 1.72679 1.18786 0.91244 0.85880 0.95719 1.21076 1.03769 0.91304 1.08238 1.17325 0.93059 0.82046 0.96328 1.91538 1.86988 1.49026 1.83408 1.20908 0.95518 0.99937 1.02054 1.20874 1.00513 0.89717 0.99361 1.16992 0.92085 0.84276 1.02221 1.91569 1.86291 1.48885 1.83358 1.22896 0.97841 0.80932 1.01361 0.93474 0.78021 0.91233 0.91905 0.91472 0.90754 0.90771 0.90828 0.88572 0.88676 0.83112 0.83443 0.82783 0.91720 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.72 -17.45 5.12 -53.31 -0.27 -17.72 16 10 C 0.17 3.20 2.92 -67.81 -0.20 3.01 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.84 5.35 -26.69 -0.14 -1.99 16 13 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 14 C 0.10 1.00 6.34 -3.71 -0.02 0.98 16 15 N -0.60 -8.54 2.97 -172.76 -0.51 -9.05 16 16 C 0.51 7.83 7.77 -10.99 -0.09 7.74 16 17 O -0.51 -10.58 15.91 -14.36 -0.23 -10.80 16 18 C 0.04 0.40 3.57 36.01 0.13 0.53 16 19 O -0.27 -3.61 9.53 -39.53 -0.38 -3.98 16 20 C 0.13 1.38 6.69 -39.19 -0.26 1.12 16 21 C -0.22 -1.79 9.01 -39.38 -0.36 -2.14 16 22 C 0.13 1.00 7.30 -39.44 -0.29 0.71 16 23 F -0.13 -1.04 17.27 2.25 0.04 -1.01 16 24 C -0.17 -1.03 10.02 -39.49 -0.40 -1.42 16 25 C -0.09 -0.59 10.02 -39.54 -0.40 -0.99 16 26 C 0.06 0.66 7.31 -39.30 -0.29 0.37 16 27 F -0.12 -1.55 17.11 2.25 0.04 -1.52 16 28 C 0.09 1.70 6.02 -3.71 -0.02 1.68 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.39 9.85 7.80 -40.82 -0.32 9.53 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.46 5.93 -51.93 -0.31 0.15 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.73 7.20 -51.93 -0.37 0.36 16 38 H 0.10 0.69 7.48 -51.93 -0.39 0.31 16 39 H 0.15 0.87 6.30 -52.49 -0.33 0.54 16 40 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 41 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.09 2.02 7.01 -51.93 -0.36 1.66 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -34.39 366.58 -8.26 -42.64 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.43 Total: 4.56 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.73 Total: 0.80 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.06 Total: -53.84 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.61 Total: -14.79 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.39 -8.26 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000746567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.385 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds