Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.49644 * 34.99840 * 10 9 7 12 12 C 1.53038 * 109.50091 * 155.06253 * 10 9 7 13 13 C 1.53038 * 109.54199 * 181.31360 * 12 10 9 14 14 C 1.53198 * 109.31265 * 298.63895 * 13 12 10 15 15 N 1.46928 * 108.77528 * 54.63209 * 14 13 12 16 16 C 1.34772 * 120.62818 * 126.43452 * 15 14 13 17 17 O 1.21288 * 119.99538 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00492 * 359.97438 * 16 15 14 19 19 O 1.42894 * 109.47142 * 179.97438 * 18 16 15 20 20 C 1.35962 * 116.99614 * 179.97438 * 19 18 16 21 21 C 1.38637 * 120.04960 * 359.73031 * 20 19 18 22 22 C 1.38378 * 119.94427 * 179.79351 * 21 20 19 23 23 F 1.35097 * 119.98024 * 180.22859 * 22 21 20 24 24 C 1.38474 * 120.04620 * 0.45646 * 22 21 20 25 25 C 1.38249 * 120.09995 * 359.79229 * 24 22 21 26 26 C 1.38327 * 120.05008 * 359.97438 * 25 24 22 27 27 F 1.35098 * 120.02174 * 180.02562 * 26 25 24 28 28 C 1.46937 * 118.76292 * 306.41208 * 15 14 13 29 29 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.45957 * 301.33817 * 12 10 9 32 32 H 1.09002 * 109.45645 * 61.30660 * 12 10 9 33 33 H 1.08999 * 109.49542 * 58.58349 * 13 12 10 34 34 H 1.08994 * 109.50294 * 178.65422 * 13 12 10 35 35 H 1.09002 * 109.58764 * 174.41661 * 14 13 12 36 36 H 1.08998 * 109.58070 * 294.84542 * 14 13 12 37 37 H 1.08998 * 109.46966 * 300.00393 * 18 16 15 38 38 H 1.09003 * 109.46640 * 59.99769 * 18 16 15 39 39 H 1.08000 * 120.02781 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.95478 * 179.77315 * 24 22 21 41 41 H 1.07993 * 119.97532 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.55844 * 293.78539 * 28 15 14 43 43 H 1.08999 * 109.60997 * 173.36254 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9710 -3.5498 0.5903 12 6 1.1828 -4.7519 0.6188 13 6 1.9589 -6.0705 0.6492 14 6 2.3148 -6.4821 -0.7829 15 7 3.0320 -5.3744 -1.4289 16 6 4.2328 -5.5778 -2.0061 17 8 4.8147 -4.6552 -2.5366 18 6 4.8526 -6.9514 -1.9923 19 8 6.1144 -6.9113 -2.6618 20 6 6.8098 -8.0771 -2.7381 21 6 6.2910 -9.2331 -2.1755 22 6 6.9987 -10.4194 -2.2582 23 9 6.4917 -11.5473 -1.7142 24 6 8.2285 -10.4502 -2.8940 25 6 8.7500 -9.2975 -3.4512 26 6 8.0438 -8.1105 -3.3751 27 9 8.5538 -6.9844 -3.9203 28 6 2.4155 -4.0407 -1.4345 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0092 31 1 0.9070 -4.4693 1.6347 32 1 0.2812 -4.8752 0.0187 33 1 2.8733 -5.9411 1.2283 34 1 1.3438 -6.8443 1.1084 35 1 2.9516 -7.3665 -0.7614 36 1 1.4023 -6.6997 -1.3379 37 1 4.9979 -7.2741 -0.9614 38 1 4.1928 -7.6528 -2.5030 39 1 5.3336 -9.2086 -1.6764 40 1 8.7812 -11.3760 -2.9544 41 1 9.7095 -9.3237 -3.9462 42 1 1.5115 -4.0591 -2.0432 43 1 3.1185 -3.3144 -1.8425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000746567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = -138.365103 kcal Electronic energy + Delta-G solvation = -29002.782587 eV Core-core repulsion = 24491.066662 eV Total energy + Delta-G solvation = -4511.715924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.99037 -49.90089 -41.69199 -40.71634 -38.87598 -38.15002 -36.27861 -34.02800 -32.76979 -31.78025 -31.47445 -30.35034 -29.00379 -26.22547 -25.90039 -24.12717 -23.70203 -23.27494 -21.79779 -20.24115 -19.95946 -19.16332 -18.55192 -18.44624 -18.01314 -17.75502 -17.30715 -16.93818 -16.75034 -16.55137 -16.38769 -15.82728 -15.65838 -15.52524 -15.43374 -15.38006 -15.13968 -15.03695 -14.41922 -14.04415 -14.01000 -13.79104 -13.66560 -13.21644 -13.13675 -13.06412 -12.94073 -12.52899 -12.38890 -12.20119 -12.13722 -12.04421 -11.90664 -11.70838 -11.35993 -11.15829 -10.90978 -10.06384 -9.82654 -9.34989 -9.05017 -8.01936 -5.30865 -0.17223 0.00212 1.29208 1.41535 1.42739 1.43529 1.53262 2.27726 2.29247 2.51258 3.01795 3.10379 3.26768 3.31634 3.58332 3.70797 3.80483 3.86576 3.95456 3.99336 4.00333 4.06621 4.18756 4.30974 4.36414 4.37782 4.59447 4.65479 4.73758 4.85807 4.86613 4.88858 4.94875 5.01493 5.02516 5.15562 5.36906 5.40121 5.44498 5.49201 5.54912 6.01662 6.21495 6.34023 7.02839 7.28141 8.00447 8.25179 9.20753 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.002359 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.017173 B =11864.425817 C =13198.656971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.063 0.937 9 N -0.730 5.730 10 C 0.166 3.834 11 H 0.031 0.969 12 C -0.120 4.120 13 C -0.122 4.122 14 C 0.096 3.904 15 N -0.598 5.598 16 C 0.502 3.498 17 O -0.583 6.583 18 C 0.045 3.955 19 O -0.313 6.313 20 C 0.111 3.889 21 C -0.216 4.216 22 C 0.128 3.872 23 F -0.131 7.131 24 C -0.153 4.153 25 C -0.075 4.075 26 C 0.030 3.970 27 F -0.148 7.148 28 C 0.108 3.892 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.177 0.823 40 H 0.178 0.822 41 H 0.179 0.821 42 H 0.062 0.938 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.932 -31.011 -2.662 33.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.049 0.951 12 C -0.158 4.158 13 C -0.161 4.161 14 C -0.025 4.025 15 N -0.332 5.332 16 C 0.290 3.710 17 O -0.463 6.463 18 C -0.032 4.032 19 O -0.226 6.226 20 C 0.064 3.936 21 C -0.235 4.235 22 C 0.109 3.891 23 F -0.109 7.109 24 C -0.171 4.171 25 C -0.094 4.094 26 C 0.010 3.990 27 F -0.126 7.126 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.194 0.806 40 H 0.195 0.805 41 H 0.196 0.804 42 H 0.081 0.919 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.407 -30.203 -2.987 32.788 hybrid contribution -0.248 1.864 -0.100 1.883 sum 12.159 -28.338 -3.087 30.991 Atomic orbital electron populations 1.69788 1.06236 1.26123 1.59086 1.25469 0.96412 1.00753 1.03390 0.85182 0.77992 0.80265 0.77005 1.19959 1.21846 1.21304 1.19527 0.90969 0.85538 1.41602 0.91858 1.42524 1.05578 1.00628 1.88225 1.20679 0.94767 0.86176 0.92716 0.95098 1.21755 0.98552 0.94581 1.00898 1.21898 1.01086 0.96703 0.96396 1.22284 0.98650 0.88136 0.93405 1.48232 1.18403 1.11124 1.55435 1.20793 0.81261 0.90653 0.78268 1.90758 1.62728 1.46241 1.46524 1.22856 0.84234 0.94887 1.01254 1.86240 1.32710 1.29883 1.73752 1.18941 0.91458 0.85912 0.97265 1.21242 1.04590 0.90318 1.07381 1.17466 0.93442 0.81895 0.96310 1.91548 1.87041 1.48939 1.83412 1.21262 0.95041 1.00614 1.00205 1.21150 1.01014 0.88562 0.98642 1.17565 0.93101 0.84673 1.03673 1.91498 1.86707 1.50423 1.84007 1.22262 0.96618 0.82842 1.00068 0.93785 0.78920 0.92079 0.91325 0.91584 0.86644 0.85851 0.88928 0.84887 0.84600 0.80563 0.80496 0.80361 0.91924 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.96 13.06 21.65 0.28 -58.67 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.97 47.89 29.55 68.60 2.03 49.92 16 4 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 7 C -0.24 -14.07 9.93 84.03 0.83 -13.23 16 8 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -36.92 5.12 -322.58 -1.65 -38.57 16 10 C 0.17 6.52 2.92 45.07 0.13 6.65 16 11 H 0.03 1.32 8.08 -2.38 -0.02 1.31 16 12 C -0.12 -3.32 5.35 30.62 0.16 -3.16 16 13 C -0.12 -2.06 6.08 30.67 0.19 -1.87 16 14 C 0.10 1.42 6.34 86.36 0.55 1.97 16 15 N -0.60 -16.34 2.97 -818.87 -2.43 -18.77 16 16 C 0.50 15.24 7.77 87.66 0.68 15.92 16 17 O -0.58 -25.49 15.91 15.98 0.25 -25.24 16 18 C 0.04 0.81 3.57 71.24 0.25 1.07 16 19 O -0.31 -8.11 9.53 -74.08 -0.71 -8.82 16 20 C 0.11 2.18 6.69 22.53 0.15 2.33 16 21 C -0.22 -2.70 9.01 22.40 0.20 -2.50 16 22 C 0.13 1.46 7.30 22.36 0.16 1.63 16 23 F -0.13 -1.56 17.27 44.97 0.78 -0.78 16 24 C -0.15 -1.35 10.02 22.33 0.22 -1.12 16 25 C -0.08 -0.87 10.02 22.29 0.22 -0.65 16 26 C 0.03 0.60 7.31 22.45 0.16 0.76 16 27 F -0.15 -3.92 17.11 44.97 0.77 -3.15 16 28 C 0.11 4.08 6.02 86.36 0.52 4.60 16 29 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.38 20.02 7.80 -92.71 -0.72 19.29 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.12 0.70 5.93 -2.39 -0.01 0.69 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.13 1.40 7.20 -2.39 -0.02 1.38 16 38 H 0.14 1.32 7.48 -2.39 -0.02 1.31 16 39 H 0.18 1.11 6.30 -2.91 -0.02 1.09 16 40 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 41 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.04 2.12 7.01 -2.39 -0.02 2.10 16 Total: -1.00 -83.24 366.58 4.57 -78.68 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.34 Total: 16.49 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 4.91 Total: 8.91 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -3.80 Total: -116.02 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.45 Total: -34.05 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 1.55 Total: -3.93 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -83.24 4.57 -78.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000746567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.689 kcal (2) G-P(sol) polarization free energy of solvation -83.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds