Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.49453 * 325.00019 * 10 9 7 12 12 C 1.53043 * 109.49889 * 204.93418 * 10 9 7 13 13 C 1.53041 * 109.53788 * 178.68066 * 12 10 9 14 14 C 1.53183 * 109.31293 * 61.36577 * 13 12 10 15 15 N 1.46929 * 108.77910 * 305.36396 * 14 13 12 16 16 C 1.34769 * 120.63241 * 233.61041 * 15 14 13 17 17 O 1.21283 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00116 * 359.97438 * 16 15 14 19 19 O 1.42905 * 109.47435 * 179.97438 * 18 16 15 20 20 C 1.35944 * 117.00050 * 179.97438 * 19 18 16 21 21 C 1.38722 * 120.02071 * 359.73029 * 20 19 18 22 22 C 1.38163 * 120.01200 * 179.71766 * 21 20 19 23 23 C 1.38408 * 120.05285 * 0.55227 * 22 21 20 24 24 F 1.35107 * 119.97869 * 179.74515 * 23 22 21 25 25 C 1.38646 * 120.04271 * 359.72485 * 23 22 21 26 26 F 1.35098 * 120.00920 * 180.02562 * 25 23 22 27 27 C 1.38363 * 119.98138 * 359.97438 * 25 23 22 28 28 C 1.46933 * 118.76219 * 53.58375 * 15 14 13 29 29 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.45828 * 298.70214 * 12 10 9 32 32 H 1.09004 * 109.45670 * 58.67707 * 12 10 9 33 33 H 1.09003 * 109.49409 * 181.32068 * 13 12 10 34 34 H 1.09002 * 109.49549 * 301.38135 * 13 12 10 35 35 H 1.09003 * 109.58721 * 65.14912 * 14 13 12 36 36 H 1.08995 * 109.58730 * 185.57326 * 14 13 12 37 37 H 1.09003 * 109.47034 * 299.99749 * 18 16 15 38 38 H 1.09003 * 109.47140 * 59.99578 * 18 16 15 39 39 H 1.08006 * 119.99210 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97158 * 180.25377 * 22 21 20 41 41 H 1.08005 * 120.02102 * 179.97438 * 27 25 23 42 42 H 1.09002 * 109.61577 * 186.64475 * 28 15 14 43 43 H 1.08999 * 109.55901 * 66.21882 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9665 -3.5523 -0.5884 12 6 1.1780 -4.7546 -0.5977 13 6 1.9540 -6.0733 -0.6283 14 6 2.3210 -6.4786 0.8026 15 7 3.0432 -5.3682 1.4383 16 6 4.2487 -5.5688 2.0063 17 8 4.8351 -4.6438 2.5274 18 6 4.8684 -6.9425 1.9938 19 8 6.1364 -6.8991 2.6514 20 6 6.8319 -8.0646 2.7282 21 6 6.3016 -9.2264 2.1865 22 6 7.0112 -10.4096 2.2595 23 6 8.2466 -10.4395 2.8829 24 9 8.9370 -11.5985 2.9580 25 6 8.7763 -9.2810 3.4301 26 9 9.9824 -9.3109 4.0380 27 6 8.0697 -8.0939 3.3525 28 6 2.4268 -4.0344 1.4428 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0092 31 1 0.2810 -4.8751 0.0097 32 1 0.8946 -4.4766 -1.6128 33 1 1.3351 -6.8492 -1.0789 34 1 2.8635 -5.9466 -1.2156 35 1 1.4128 -6.6937 1.3657 36 1 2.9575 -7.3631 0.7800 37 1 4.2129 -7.6414 2.5134 38 1 5.0049 -7.2701 0.9632 39 1 5.3355 -9.2051 1.7040 40 1 6.5995 -11.3128 1.8340 41 1 8.4815 -7.1910 3.7789 42 1 3.1329 -3.3063 1.8421 43 1 1.5275 -4.0501 2.0585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001072785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = -116.319027 kcal Electronic energy + Delta-G solvation = -28668.275781 eV Core-core repulsion = 24157.515846 eV Total energy + Delta-G solvation = -4510.759935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.82771 -48.89273 -40.87257 -39.80999 -37.80012 -37.03920 -34.61545 -32.48686 -31.68406 -31.30135 -30.24549 -29.13716 -27.80376 -25.08844 -24.06441 -23.82636 -22.79851 -22.01839 -20.48129 -19.23096 -19.10797 -17.93337 -17.76428 -17.23062 -17.15677 -16.91005 -16.47614 -16.18161 -15.93363 -15.31134 -15.06418 -14.88287 -14.69558 -14.53500 -14.40334 -14.29366 -13.92927 -13.51922 -13.39615 -13.25382 -13.02739 -12.70938 -12.57564 -12.49720 -12.29559 -11.66969 -11.45251 -11.32987 -11.15022 -10.90804 -10.75981 -10.68828 -10.23049 -9.90480 -9.86225 -9.65899 -9.57467 -9.15489 -8.69625 -8.50331 -7.06471 -5.83886 -3.14082 0.41325 0.55030 2.16364 2.53307 2.85850 3.17829 3.41674 3.46961 3.48638 3.50835 3.92196 4.02967 4.23627 4.27564 4.48665 4.54246 4.60244 4.63673 4.72116 4.73733 4.92775 5.09806 5.26297 5.35256 5.39200 5.40413 5.41846 5.46995 5.58659 5.69128 5.80084 5.90172 6.05051 6.08545 6.10836 6.23856 6.37528 6.54960 6.71767 6.75890 6.90564 7.42471 7.67804 8.15215 8.34128 9.46281 9.99081 10.34061 11.38218 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.002079 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.080863 B =13466.036368 C =14585.107655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.104 3.896 15 N -0.602 5.602 16 C 0.511 3.489 17 O -0.516 6.516 18 C 0.039 3.961 19 O -0.279 6.279 20 C 0.157 3.843 21 C -0.194 4.194 22 C -0.081 4.081 23 C 0.025 3.975 24 F -0.131 7.131 25 C 0.112 3.888 26 F -0.122 7.122 27 C -0.160 4.160 28 C 0.093 3.907 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.092 0.908 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.320 -25.473 2.640 27.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.019 4.019 15 N -0.338 5.338 16 C 0.296 3.704 17 O -0.390 6.390 18 C -0.039 4.039 19 O -0.190 6.190 20 C 0.110 3.890 21 C -0.213 4.213 22 C -0.100 4.100 23 C 0.004 3.996 24 F -0.110 7.110 25 C 0.092 3.908 26 F -0.100 7.100 27 C -0.180 4.180 28 C -0.031 4.031 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.111 0.889 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.872 -24.626 3.009 26.701 hybrid contribution 0.238 0.499 0.044 0.555 sum 10.109 -24.126 3.053 26.336 Atomic orbital electron populations 1.69670 1.05134 1.25738 1.57357 1.24760 0.95536 0.97826 1.02516 0.86113 0.78996 0.83903 0.77200 1.20383 1.21810 1.21739 1.19313 0.91148 0.83918 1.43135 0.90944 1.42385 1.05823 0.99570 1.88007 1.20497 0.94979 0.86541 0.92321 0.93036 1.21835 0.98705 0.93962 1.02031 1.21891 1.01102 0.98454 0.95501 1.21805 0.97110 0.88495 0.94471 1.48228 1.17939 1.11577 1.56024 1.19833 0.81681 0.89190 0.79666 1.90780 1.60946 1.43476 1.43837 1.22722 0.84248 0.98074 0.98866 1.86229 1.30944 1.28660 1.73183 1.18667 0.91054 0.85290 0.93949 1.21224 1.02557 0.91687 1.05839 1.20844 0.91994 0.99521 0.97608 1.17528 0.93762 0.81523 1.06755 1.91528 1.78723 1.45776 1.94924 1.17227 0.82846 0.93081 0.97688 1.91560 1.41031 1.97002 1.80442 1.20210 0.94278 0.98234 1.05236 1.22897 0.97850 0.80965 1.01349 0.93463 0.78022 0.91911 0.91236 0.90772 0.91460 0.90848 0.90715 0.88690 0.88591 0.83577 0.83172 0.82475 0.88928 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.72 -17.14 5.12 -53.31 -0.27 -17.41 16 10 C 0.17 3.11 2.92 -67.81 -0.20 2.91 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.13 -1.78 5.36 -26.69 -0.14 -1.92 16 13 C -0.13 -1.27 6.08 -26.62 -0.16 -1.43 16 14 C 0.10 0.91 6.34 -3.71 -0.02 0.89 16 15 N -0.60 -8.03 2.97 -172.77 -0.51 -8.55 16 16 C 0.51 7.27 7.77 -10.99 -0.09 7.18 16 17 O -0.52 -10.04 15.91 -14.35 -0.23 -10.27 16 18 C 0.04 0.36 3.57 36.01 0.13 0.49 16 19 O -0.28 -3.19 9.67 -39.47 -0.38 -3.57 16 20 C 0.16 1.43 6.68 -39.25 -0.26 1.17 16 21 C -0.19 -1.24 9.04 -39.43 -0.36 -1.59 16 22 C -0.08 -0.51 10.02 -39.55 -0.40 -0.91 16 23 C 0.02 0.21 7.30 -39.37 -0.29 -0.07 16 24 F -0.13 -1.27 17.18 2.25 0.04 -1.23 16 25 C 0.11 1.06 7.30 -39.38 -0.29 0.77 16 26 F -0.12 -1.28 17.18 2.25 0.04 -1.24 16 27 C -0.16 -1.49 9.96 -39.38 -0.39 -1.88 16 28 C 0.09 1.64 6.02 -3.71 -0.02 1.61 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.39 9.70 7.80 -40.82 -0.32 9.38 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.39 5.93 -51.93 -0.31 0.08 16 37 H 0.10 0.56 7.45 -51.93 -0.39 0.17 16 38 H 0.10 0.60 7.22 -51.93 -0.38 0.22 16 39 H 0.15 0.52 6.29 -52.48 -0.33 0.19 16 40 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 42 H 0.09 1.95 7.01 -51.93 -0.36 1.59 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -33.65 366.65 -8.26 -41.90 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.43 Total: 4.21 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.73 Total: 0.04 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.06 Total: -52.71 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.61 Total: -13.84 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.08 Total: -2.47 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.65 -8.26 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001072785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.416 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds