Wall clock time and date at job start Sat Apr 11 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.49453 * 325.00019 * 10 9 7 12 12 C 1.53043 * 109.49889 * 204.93418 * 10 9 7 13 13 C 1.53041 * 109.53788 * 178.68066 * 12 10 9 14 14 C 1.53183 * 109.31293 * 61.36577 * 13 12 10 15 15 N 1.46929 * 108.77910 * 305.36396 * 14 13 12 16 16 C 1.34769 * 120.63241 * 233.61041 * 15 14 13 17 17 O 1.21283 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00116 * 359.97438 * 16 15 14 19 19 O 1.42905 * 109.47435 * 179.97438 * 18 16 15 20 20 C 1.35944 * 117.00050 * 179.97438 * 19 18 16 21 21 C 1.38722 * 120.02071 * 359.73029 * 20 19 18 22 22 C 1.38163 * 120.01200 * 179.71766 * 21 20 19 23 23 C 1.38408 * 120.05285 * 0.55227 * 22 21 20 24 24 F 1.35107 * 119.97869 * 179.74515 * 23 22 21 25 25 C 1.38646 * 120.04271 * 359.72485 * 23 22 21 26 26 F 1.35098 * 120.00920 * 180.02562 * 25 23 22 27 27 C 1.38363 * 119.98138 * 359.97438 * 25 23 22 28 28 C 1.46933 * 118.76219 * 53.58375 * 15 14 13 29 29 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.45828 * 298.70214 * 12 10 9 32 32 H 1.09004 * 109.45670 * 58.67707 * 12 10 9 33 33 H 1.09003 * 109.49409 * 181.32068 * 13 12 10 34 34 H 1.09002 * 109.49549 * 301.38135 * 13 12 10 35 35 H 1.09003 * 109.58721 * 65.14912 * 14 13 12 36 36 H 1.08995 * 109.58730 * 185.57326 * 14 13 12 37 37 H 1.09003 * 109.47034 * 299.99749 * 18 16 15 38 38 H 1.09003 * 109.47140 * 59.99578 * 18 16 15 39 39 H 1.08006 * 119.99210 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97158 * 180.25377 * 22 21 20 41 41 H 1.08005 * 120.02102 * 179.97438 * 27 25 23 42 42 H 1.09002 * 109.61577 * 186.64475 * 28 15 14 43 43 H 1.08999 * 109.55901 * 66.21882 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9665 -3.5523 -0.5884 12 6 1.1780 -4.7546 -0.5977 13 6 1.9540 -6.0733 -0.6283 14 6 2.3210 -6.4786 0.8026 15 7 3.0432 -5.3682 1.4383 16 6 4.2487 -5.5688 2.0063 17 8 4.8351 -4.6438 2.5274 18 6 4.8684 -6.9425 1.9938 19 8 6.1364 -6.8991 2.6514 20 6 6.8319 -8.0646 2.7282 21 6 6.3016 -9.2264 2.1865 22 6 7.0112 -10.4096 2.2595 23 6 8.2466 -10.4395 2.8829 24 9 8.9370 -11.5985 2.9580 25 6 8.7763 -9.2810 3.4301 26 9 9.9824 -9.3109 4.0380 27 6 8.0697 -8.0939 3.3525 28 6 2.4268 -4.0344 1.4428 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0092 31 1 0.2810 -4.8751 0.0097 32 1 0.8946 -4.4766 -1.6128 33 1 1.3351 -6.8492 -1.0789 34 1 2.8635 -5.9466 -1.2156 35 1 1.4128 -6.6937 1.3657 36 1 2.9575 -7.3631 0.7800 37 1 4.2129 -7.6414 2.5134 38 1 5.0049 -7.2701 0.9632 39 1 5.3355 -9.2051 1.7040 40 1 6.5995 -11.3128 1.8340 41 1 8.4815 -7.1910 3.7789 42 1 3.1329 -3.3063 1.8421 43 1 1.5275 -4.0501 2.0585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001072785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:03 Heat of formation + Delta-G solvation = -138.066486 kcal Electronic energy + Delta-G solvation = -28669.218821 eV Core-core repulsion = 24157.515846 eV Total energy + Delta-G solvation = -4511.702975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -50.53150 -49.59469 -41.68041 -40.75576 -38.80854 -37.96711 -36.24343 -33.99353 -32.72923 -32.26266 -31.06485 -30.27728 -28.93376 -26.13090 -25.87083 -24.44617 -23.51516 -23.22252 -21.74604 -20.19541 -19.89092 -19.14389 -18.60848 -18.50626 -18.07711 -17.62460 -17.23584 -17.02398 -16.94038 -16.64657 -16.03116 -15.88441 -15.63529 -15.52572 -15.45477 -15.29221 -15.07593 -15.01866 -14.54826 -14.00223 -13.96740 -13.81310 -13.64506 -13.35578 -13.21502 -13.08245 -12.92772 -12.50383 -12.24804 -12.18598 -12.01582 -11.93550 -11.86694 -11.66756 -11.32438 -11.13387 -10.83313 -10.16419 -9.77429 -9.32250 -9.02491 -8.00612 -5.29237 -0.17369 -0.03627 1.35376 1.43333 1.44378 1.50450 1.54032 2.28666 2.31747 2.52397 2.85387 3.30724 3.32251 3.33368 3.59112 3.72659 3.79867 3.96454 4.01750 4.02772 4.07095 4.14000 4.17663 4.25346 4.35455 4.41662 4.64724 4.72239 4.78749 4.80951 4.89843 4.91703 4.93152 5.02421 5.06849 5.20195 5.40132 5.43835 5.47712 5.51287 5.57604 6.11827 6.23012 6.42077 7.10330 7.29558 8.02716 8.26710 9.22072 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.002079 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.080863 B =13466.036368 C =14585.107655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.068 4.068 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.064 0.936 9 N -0.730 5.730 10 C 0.166 3.834 11 H 0.031 0.969 12 C -0.121 4.121 13 C -0.123 4.123 14 C 0.096 3.904 15 N -0.599 5.599 16 C 0.501 3.499 17 O -0.585 6.585 18 C 0.044 3.956 19 O -0.314 6.314 20 C 0.146 3.854 21 C -0.174 4.174 22 C -0.066 4.066 23 C 0.012 3.988 24 F -0.140 7.140 25 C 0.092 3.908 26 F -0.137 7.137 27 C -0.176 4.176 28 C 0.108 3.892 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.190 0.810 40 H 0.187 0.813 41 H 0.147 0.853 42 H 0.044 0.956 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.479 -29.429 1.385 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.261 4.261 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.082 0.918 9 N -0.370 5.370 10 C 0.056 3.944 11 H 0.050 0.950 12 C -0.159 4.159 13 C -0.161 4.161 14 C -0.024 4.024 15 N -0.333 5.333 16 C 0.289 3.711 17 O -0.465 6.465 18 C -0.033 4.033 19 O -0.226 6.226 20 C 0.100 3.900 21 C -0.193 4.193 22 C -0.085 4.085 23 C -0.008 4.008 24 F -0.119 7.119 25 C 0.072 3.928 26 F -0.115 7.115 27 C -0.195 4.195 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.210 0.790 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.207 0.793 40 H 0.204 0.796 41 H 0.165 0.835 42 H 0.063 0.937 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.044 -28.667 1.734 30.110 hybrid contribution 0.515 1.659 0.431 1.790 sum 9.560 -27.008 2.165 28.731 Atomic orbital electron populations 1.69787 1.06233 1.26073 1.59169 1.25464 0.96399 1.00742 1.03502 0.85190 0.78026 0.80332 0.76944 1.19903 1.21435 1.21912 1.19530 0.90986 0.85531 1.41433 0.91781 1.42537 1.05567 1.00687 1.88226 1.20696 0.94743 0.86113 0.92859 0.95045 1.21765 0.98545 0.94754 1.00822 1.21902 1.01048 0.96515 0.96651 1.22293 0.98637 0.88190 0.93314 1.48236 1.18123 1.10891 1.56044 1.20901 0.81174 0.90933 0.78071 1.90755 1.62713 1.46255 1.46783 1.22895 0.84031 0.94536 1.01803 1.86180 1.32128 1.30283 1.74048 1.18770 0.90780 0.85670 0.94762 1.21633 1.03645 0.89987 1.03989 1.21247 0.90413 1.00894 0.95916 1.17848 0.94807 0.80778 1.07371 1.91503 1.79188 1.46146 1.95065 1.17413 0.82754 0.93819 0.98830 1.91513 1.41976 1.97110 1.80932 1.20224 0.95215 0.97952 1.06138 1.22226 0.96594 0.83089 0.99888 0.93834 0.78977 0.91449 0.92285 0.86712 0.91486 0.89085 0.85242 0.84099 0.84400 0.79301 0.79622 0.83540 0.93735 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.30 13.06 21.65 0.28 -58.02 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 4 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 7 C -0.24 -13.72 9.93 84.03 0.83 -12.89 16 8 H 0.06 3.65 7.83 -2.91 -0.02 3.62 16 9 N -0.73 -36.12 5.12 -322.57 -1.65 -37.77 16 10 C 0.17 6.23 2.92 45.07 0.13 6.36 16 11 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 12 C -0.12 -3.17 5.36 30.62 0.16 -3.00 16 13 C -0.12 -1.79 6.08 30.67 0.19 -1.61 16 14 C 0.10 1.15 6.34 86.36 0.55 1.69 16 15 N -0.60 -14.72 2.97 -818.91 -2.43 -17.15 16 16 C 0.50 13.45 7.77 87.66 0.68 14.13 16 17 O -0.59 -23.67 15.91 16.00 0.25 -23.42 16 18 C 0.04 0.59 3.57 71.24 0.25 0.85 16 19 O -0.31 -6.49 9.67 -73.89 -0.71 -7.20 16 20 C 0.15 2.27 6.68 22.49 0.15 2.42 16 21 C -0.17 -1.27 9.04 22.37 0.20 -1.07 16 22 C -0.07 -0.53 10.02 22.29 0.22 -0.30 16 23 C 0.01 0.19 7.30 22.41 0.16 0.35 16 24 F -0.14 -2.53 17.18 44.97 0.77 -1.76 16 25 C 0.09 1.73 7.30 22.40 0.16 1.89 16 26 F -0.14 -3.01 17.18 44.97 0.77 -2.24 16 27 C -0.18 -3.24 9.96 22.40 0.22 -3.02 16 28 C 0.11 3.87 6.02 86.36 0.52 4.39 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.38 19.63 7.80 -92.71 -0.72 18.90 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.13 0.22 5.93 -2.39 -0.01 0.20 16 37 H 0.14 0.62 7.45 -2.39 -0.02 0.60 16 38 H 0.14 0.72 7.22 -2.39 -0.02 0.70 16 39 H 0.19 -0.29 6.29 -2.91 -0.02 -0.31 16 40 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 41 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.04 2.01 7.01 -2.39 -0.02 2.00 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -82.79 366.65 4.56 -78.23 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.34 Total: 13.33 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 4.91 Total: 6.72 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -3.80 Total: -112.94 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.46 Total: -30.62 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 1.55 Total: -3.99 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -82.79 4.56 -78.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001072785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.835 kcal (2) G-P(sol) polarization free energy of solvation -82.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds