Wall clock time and date at job start Sat Apr 11 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47352 * 240.00084 * 3 2 1 5 5 H 1.48506 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46973 * 119.99941 * 3 2 1 7 7 C 1.38809 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99898 * 197.84820 * 7 2 1 9 9 N 1.36936 * 120.00456 * 17.84951 * 7 2 1 10 10 C 1.46850 * 120.38314 * 28.90614 * 9 7 2 11 11 C 1.53340 * 108.81212 * 123.07831 * 10 9 7 12 12 C 1.53179 * 108.76826 * 51.31868 * 11 10 9 13 13 C 1.52844 * 117.65815 * 90.01736 * 12 11 10 14 14 C 1.52917 * 117.71195 * 158.85283 * 12 11 10 15 15 H 1.09003 * 117.52488 * 144.91929 * 14 12 11 16 16 N 1.46500 * 117.49175 * 359.85927 * 14 12 11 17 17 C 1.34783 * 119.99819 * 155.05269 * 16 14 12 18 18 O 1.21613 * 119.99659 * 359.97438 * 17 16 14 19 19 C 1.47377 * 119.99808 * 180.02562 * 17 16 14 20 20 C 1.36413 * 127.19301 * 359.68227 * 19 17 16 21 21 O 1.33659 * 108.39319 * 179.84097 * 20 19 17 22 22 C 1.34212 * 110.91077 * 0.44906 * 21 20 19 23 23 C 1.50698 * 125.43653 * 179.73210 * 22 21 20 24 24 F 1.39891 * 109.47379 * 29.99440 * 23 22 21 25 25 F 1.39898 * 109.47095 * 150.00017 * 23 22 21 26 26 C 1.34181 * 109.12348 * 359.72717 * 22 21 20 27 27 C 1.53188 * 115.07716 * 304.54775 * 12 11 10 28 28 C 1.46841 * 120.38640 * 208.88947 * 9 7 2 29 29 H 0.96999 * 120.00309 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.57793 * 3.27935 * 10 9 7 31 31 H 1.09002 * 109.69161 * 242.94611 * 10 9 7 32 32 H 1.09009 * 109.58960 * 291.53303 * 11 10 9 33 33 H 1.09001 * 109.58928 * 171.10677 * 11 10 9 34 34 H 1.08996 * 117.50429 * 215.18746 * 13 12 11 35 35 H 1.09001 * 117.50185 * 0.21371 * 13 12 11 36 36 H 0.97000 * 120.00563 * 335.05791 * 16 14 12 37 37 H 1.07996 * 125.80244 * 0.02562 * 20 19 17 38 38 H 1.09009 * 109.46746 * 269.99456 * 23 22 21 39 39 H 1.07996 * 127.02151 * 180.02562 * 26 22 21 40 40 H 1.08999 * 109.58832 * 175.22778 * 27 12 11 41 41 H 1.09002 * 109.58719 * 295.65918 * 27 12 11 42 42 H 1.09005 * 109.57333 * 356.71545 * 28 9 7 43 43 H 1.09001 * 109.58325 * 117.11410 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0512 -1.2248 0.2861 9 7 1.3750 -2.3594 -0.3645 10 6 0.2557 -2.3251 -1.3145 11 6 0.5864 -3.2379 -2.5015 12 6 1.0069 -4.6099 -1.9658 13 6 -0.0872 -5.6573 -1.7606 14 6 0.9069 -5.8049 -2.9147 15 1 1.6668 -6.5817 -2.8284 16 7 0.4120 -5.5525 -4.2703 17 6 0.7531 -6.3808 -5.2774 18 8 1.4720 -7.3375 -5.0607 19 6 0.2557 -6.1265 -6.6412 20 6 -0.5566 -5.1083 -7.0462 21 8 -0.7691 -5.2352 -8.3596 22 6 -0.1326 -6.3121 -8.8460 23 6 -0.1543 -6.7647 -10.2832 24 9 -0.3064 -5.6539 -11.1198 25 9 1.0468 -7.4152 -10.5854 26 6 0.5262 -6.9212 -7.8483 27 6 2.1674 -4.5888 -0.9661 28 6 1.8053 -3.6490 0.1902 29 1 -0.4850 0.8400 -0.0004 30 1 0.1080 -1.3047 -1.6684 31 1 -0.6525 -2.6769 -0.8250 32 1 1.4033 -2.8049 -3.0790 33 1 -0.2939 -3.3470 -3.1349 34 1 0.0187 -6.3369 -0.9151 35 1 -1.1095 -5.3728 -2.0101 36 1 -0.1610 -4.7892 -4.4432 37 1 -0.9573 -4.3300 -6.4136 38 1 -0.9875 -7.4511 -10.4354 39 1 1.1317 -7.8126 -7.9178 40 1 2.3361 -5.5944 -0.5807 41 1 3.0695 -4.2288 -1.4610 42 1 2.6777 -3.4999 0.8266 43 1 0.9946 -4.0842 0.7745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016798941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:26 Heat of formation + Delta-G solvation = -70.816349 kcal Electronic energy + Delta-G solvation = -28899.523848 eV Core-core repulsion = 24390.737057 eV Total energy + Delta-G solvation = -4508.786791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -49.59477 -47.62007 -43.09429 -39.92303 -38.36083 -35.53618 -33.67168 -33.15059 -31.83607 -31.15077 -30.16970 -28.29790 -26.48081 -24.58159 -24.35494 -22.52571 -21.83970 -21.67420 -20.83108 -20.18836 -19.00049 -18.25575 -18.22350 -17.62256 -16.77174 -16.68607 -16.48996 -16.28060 -15.86895 -14.89074 -14.75500 -14.52784 -14.33755 -14.19138 -13.97525 -13.76913 -13.61042 -13.40722 -13.33581 -13.10481 -12.98417 -12.68254 -12.33751 -12.01218 -11.77821 -11.56898 -11.43913 -11.02389 -10.74632 -10.56137 -10.35494 -10.30990 -10.23653 -9.98656 -9.77354 -9.63865 -9.42887 -9.39497 -8.55109 -8.48349 -6.68107 -5.82948 -3.25771 0.82600 1.35368 1.91260 2.84134 3.07583 3.27832 3.35889 3.41692 3.43467 3.54322 4.09952 4.13004 4.17301 4.24711 4.46857 4.47993 4.87374 4.90744 5.03069 5.07390 5.08604 5.30725 5.35267 5.45299 5.58753 5.67438 5.80865 5.99610 6.02772 6.06042 6.22862 6.32865 6.38756 6.48759 6.51275 6.58736 6.65252 6.78690 6.95892 7.27671 7.37519 7.59165 7.76294 8.06482 8.42691 9.18133 9.81619 10.38133 11.24951 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.002289 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.493774 B =12232.106474 C =13379.827930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.105 4.105 12 C -0.096 4.096 13 C -0.181 4.181 14 C 0.069 3.931 15 H 0.133 0.867 16 N -0.689 5.689 17 C 0.589 3.411 18 O -0.536 6.536 19 C -0.232 4.232 20 C 0.047 3.953 21 O -0.153 6.153 22 C -0.108 4.108 23 C 0.366 3.634 24 F -0.190 7.190 25 F -0.183 7.183 26 C -0.104 4.104 27 C -0.098 4.098 28 C 0.149 3.851 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.018 0.982 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.399 0.601 37 H 0.222 0.778 38 H 0.141 0.859 39 H 0.170 0.830 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 -14.051 -17.327 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.144 4.144 12 C -0.097 4.097 13 C -0.219 4.219 14 C -0.037 4.037 15 H 0.151 0.849 16 N -0.338 5.338 17 C 0.376 3.624 18 O -0.413 6.413 19 C -0.237 4.237 20 C -0.024 4.024 21 O -0.047 6.047 22 C -0.158 4.158 23 C 0.312 3.688 24 F -0.171 7.171 25 F -0.164 7.164 26 C -0.123 4.123 27 C -0.138 4.138 28 C 0.022 3.978 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.235 0.765 37 H 0.238 0.762 38 H 0.158 0.842 39 H 0.187 0.813 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -4.189 -14.392 -17.376 22.948 hybrid contribution 0.225 1.252 0.060 1.273 sum -3.964 -13.140 -17.317 22.096 Atomic orbital electron populations 1.70019 1.05273 1.25636 1.53736 1.25039 0.95253 0.98446 1.00849 0.86388 0.78972 0.83342 0.78200 1.21023 1.21645 1.20850 1.19157 0.92866 0.85040 1.41242 0.91792 1.43959 1.37796 1.01578 1.47810 1.20741 0.88912 0.98604 0.87019 1.21824 0.99002 0.93651 0.99968 1.21989 0.98289 0.91086 0.98347 1.23543 0.95875 1.02990 0.99521 1.21928 1.01169 1.02707 0.77853 0.84897 1.45221 1.51646 1.29301 1.07669 1.17098 0.80112 0.82421 0.82749 1.90788 1.37215 1.29459 1.83868 1.21552 1.06744 0.99971 0.95436 1.24742 0.97103 0.99103 0.81434 1.83746 1.58222 1.39859 1.22918 1.22606 1.04493 0.92165 0.96498 1.19532 0.86090 0.82785 0.80359 1.93061 1.95791 1.55261 1.73003 1.93078 1.49219 1.81008 1.93083 1.22570 0.99463 1.01049 0.89254 1.21700 0.95879 0.99374 0.96835 1.20862 0.97480 0.86876 0.92532 0.93587 0.89202 0.96375 0.91972 0.93942 0.88322 0.88871 0.76533 0.76202 0.84229 0.81276 0.92779 0.91771 0.92610 0.96219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 11.23 55.49 0.62 -24.80 16 2 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 3 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.77 9.54 -15.06 -0.14 -6.92 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.20 2.94 -172.26 -0.51 -14.70 16 10 C 0.17 3.87 5.40 -3.68 -0.02 3.85 16 11 C -0.11 -1.81 5.37 -26.46 -0.14 -1.95 16 12 C -0.10 -1.50 1.94 -154.44 -0.30 -1.80 16 13 C -0.18 -2.46 9.86 -26.79 -0.26 -2.73 16 14 C 0.07 0.96 6.14 -67.95 -0.42 0.54 16 15 H 0.13 1.98 7.40 -51.93 -0.38 1.60 16 16 N -0.69 -8.42 5.34 -54.92 -0.29 -8.71 16 17 C 0.59 7.92 7.81 -12.54 -0.10 7.82 16 18 O -0.54 -9.11 16.55 5.27 0.09 -9.03 16 19 C -0.23 -2.51 6.31 -103.28 -0.65 -3.16 16 20 C 0.05 0.39 11.61 30.07 0.35 0.73 16 21 O -0.15 -1.38 10.50 7.64 0.08 -1.30 16 22 C -0.11 -0.94 6.90 -35.74 -0.25 -1.18 16 23 C 0.37 2.35 5.82 36.00 0.21 2.56 16 24 F -0.19 -1.62 17.30 2.25 0.04 -1.58 16 25 F -0.18 -1.45 17.01 2.25 0.04 -1.41 16 26 C -0.10 -1.03 10.54 -37.45 -0.39 -1.43 16 27 C -0.10 -1.65 5.83 -26.45 -0.15 -1.80 16 28 C 0.15 3.01 6.51 -3.68 -0.02 2.99 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.09 2.27 5.93 -51.93 -0.31 1.96 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.40 3.96 6.09 -40.82 -0.25 3.71 16 37 H 0.22 0.99 7.47 -52.49 -0.39 0.60 16 38 H 0.14 0.31 8.14 -51.92 -0.42 -0.11 16 39 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -32.83 367.18 -7.26 -40.09 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.45 Total: 2.18 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.38 Total: -2.49 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.18 Total: -48.22 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.17 Total: -10.32 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.08 Total: -2.99 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.83 -7.26 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016798941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.729 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds