Wall clock time and date at job start Sat Apr 11 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47352 * 240.00084 * 3 2 1 5 5 H 1.48506 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46973 * 119.99941 * 3 2 1 7 7 C 1.38809 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99898 * 197.84820 * 7 2 1 9 9 N 1.36936 * 120.00456 * 17.84951 * 7 2 1 10 10 C 1.46850 * 120.38314 * 28.90614 * 9 7 2 11 11 C 1.53340 * 108.81212 * 123.07831 * 10 9 7 12 12 C 1.53179 * 108.76826 * 51.31868 * 11 10 9 13 13 C 1.52844 * 117.65815 * 90.01736 * 12 11 10 14 14 C 1.52917 * 117.71195 * 158.85283 * 12 11 10 15 15 H 1.09003 * 117.52488 * 144.91929 * 14 12 11 16 16 N 1.46500 * 117.49175 * 359.85927 * 14 12 11 17 17 C 1.34783 * 119.99819 * 155.05269 * 16 14 12 18 18 O 1.21613 * 119.99659 * 359.97438 * 17 16 14 19 19 C 1.47377 * 119.99808 * 180.02562 * 17 16 14 20 20 C 1.36413 * 127.19301 * 359.68227 * 19 17 16 21 21 O 1.33659 * 108.39319 * 179.84097 * 20 19 17 22 22 C 1.34212 * 110.91077 * 0.44906 * 21 20 19 23 23 C 1.50698 * 125.43653 * 179.73210 * 22 21 20 24 24 F 1.39891 * 109.47379 * 29.99440 * 23 22 21 25 25 F 1.39898 * 109.47095 * 150.00017 * 23 22 21 26 26 C 1.34181 * 109.12348 * 359.72717 * 22 21 20 27 27 C 1.53188 * 115.07716 * 304.54775 * 12 11 10 28 28 C 1.46841 * 120.38640 * 208.88947 * 9 7 2 29 29 H 0.96999 * 120.00309 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.57793 * 3.27935 * 10 9 7 31 31 H 1.09002 * 109.69161 * 242.94611 * 10 9 7 32 32 H 1.09009 * 109.58960 * 291.53303 * 11 10 9 33 33 H 1.09001 * 109.58928 * 171.10677 * 11 10 9 34 34 H 1.08996 * 117.50429 * 215.18746 * 13 12 11 35 35 H 1.09001 * 117.50185 * 0.21371 * 13 12 11 36 36 H 0.97000 * 120.00563 * 335.05791 * 16 14 12 37 37 H 1.07996 * 125.80244 * 0.02562 * 20 19 17 38 38 H 1.09009 * 109.46746 * 269.99456 * 23 22 21 39 39 H 1.07996 * 127.02151 * 180.02562 * 26 22 21 40 40 H 1.08999 * 109.58832 * 175.22778 * 27 12 11 41 41 H 1.09002 * 109.58719 * 295.65918 * 27 12 11 42 42 H 1.09005 * 109.57333 * 356.71545 * 28 9 7 43 43 H 1.09001 * 109.58325 * 117.11410 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0512 -1.2248 0.2861 9 7 1.3750 -2.3594 -0.3645 10 6 0.2557 -2.3251 -1.3145 11 6 0.5864 -3.2379 -2.5015 12 6 1.0069 -4.6099 -1.9658 13 6 -0.0872 -5.6573 -1.7606 14 6 0.9069 -5.8049 -2.9147 15 1 1.6668 -6.5817 -2.8284 16 7 0.4120 -5.5525 -4.2703 17 6 0.7531 -6.3808 -5.2774 18 8 1.4720 -7.3375 -5.0607 19 6 0.2557 -6.1265 -6.6412 20 6 -0.5566 -5.1083 -7.0462 21 8 -0.7691 -5.2352 -8.3596 22 6 -0.1326 -6.3121 -8.8460 23 6 -0.1543 -6.7647 -10.2832 24 9 -0.3064 -5.6539 -11.1198 25 9 1.0468 -7.4152 -10.5854 26 6 0.5262 -6.9212 -7.8483 27 6 2.1674 -4.5888 -0.9661 28 6 1.8053 -3.6490 0.1902 29 1 -0.4850 0.8400 -0.0004 30 1 0.1080 -1.3047 -1.6684 31 1 -0.6525 -2.6769 -0.8250 32 1 1.4033 -2.8049 -3.0790 33 1 -0.2939 -3.3470 -3.1349 34 1 0.0187 -6.3369 -0.9151 35 1 -1.1095 -5.3728 -2.0101 36 1 -0.1610 -4.7892 -4.4432 37 1 -0.9573 -4.3300 -6.4136 38 1 -0.9875 -7.4511 -10.4354 39 1 1.1317 -7.8126 -7.9178 40 1 2.3361 -5.5944 -0.5807 41 1 3.0695 -4.2288 -1.4610 42 1 2.6777 -3.4999 0.8266 43 1 0.9946 -4.0842 0.7745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016798941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:24 Heat of formation + Delta-G solvation = -90.830433 kcal Electronic energy + Delta-G solvation = -28900.391724 eV Core-core repulsion = 24390.737057 eV Total energy + Delta-G solvation = -4509.654666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.14723 -48.18662 -43.79122 -41.06124 -39.62851 -37.12177 -34.78304 -34.11772 -33.31162 -32.07938 -31.73835 -29.89441 -27.07161 -26.23538 -25.42474 -24.04130 -23.08628 -22.42064 -22.21206 -21.12721 -19.90857 -19.62576 -18.76752 -18.35761 -18.16648 -17.58843 -17.17177 -17.13543 -17.01474 -16.73018 -15.81941 -15.70789 -15.50401 -15.30084 -15.02968 -14.90931 -14.66615 -14.56034 -14.41770 -14.15542 -13.96320 -13.76695 -13.68944 -13.33311 -13.04842 -12.92071 -12.57803 -12.54933 -12.54224 -12.33051 -12.00349 -11.77052 -11.39245 -11.35103 -11.21625 -11.09628 -10.69818 -10.47523 -10.08850 -9.69127 -8.60696 -7.85723 -5.31179 0.12275 0.59484 1.31865 1.47506 1.49162 1.55953 1.89360 2.11908 2.52300 2.72525 2.96320 3.06305 3.28908 3.37675 3.59787 3.64951 3.79924 3.81986 3.86848 3.87638 3.98909 4.09892 4.13870 4.34599 4.54109 4.63635 4.69186 4.72107 4.86921 4.89761 4.94331 4.97360 5.01952 5.09534 5.23208 5.31157 5.38345 5.45242 5.55186 5.64949 5.66928 5.81064 6.41249 6.42736 7.07933 7.18234 7.90386 8.40643 9.18997 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.002289 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.493774 B =12232.106474 C =13379.827930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.047 4.047 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.264 4.264 8 H 0.061 0.939 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.090 4.090 12 C -0.115 4.115 13 C -0.166 4.166 14 C 0.084 3.916 15 H 0.126 0.874 16 N -0.681 5.681 17 C 0.591 3.409 18 O -0.579 6.579 19 C -0.264 4.264 20 C 0.074 3.926 21 O -0.156 6.156 22 C -0.105 4.105 23 C 0.365 3.635 24 F -0.202 7.202 25 F -0.194 7.194 26 C -0.121 4.121 27 C -0.088 4.088 28 C 0.146 3.854 29 H 0.250 0.750 30 H 0.056 0.944 31 H 0.001 0.999 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.412 0.588 37 H 0.258 0.742 38 H 0.189 0.811 39 H 0.168 0.832 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 -14.701 -18.661 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.242 4.242 3 Si 0.790 3.210 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.394 4.394 8 H 0.078 0.922 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.204 4.204 14 C -0.022 4.022 15 H 0.143 0.857 16 N -0.330 5.330 17 C 0.380 3.620 18 O -0.460 6.460 19 C -0.268 4.268 20 C 0.003 3.997 21 O -0.051 6.051 22 C -0.154 4.154 23 C 0.312 3.688 24 F -0.183 7.183 25 F -0.175 7.175 26 C -0.141 4.141 27 C -0.127 4.127 28 C 0.020 3.980 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.250 0.750 37 H 0.274 0.726 38 H 0.206 0.794 39 H 0.185 0.815 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -4.968 -15.047 -18.724 24.529 hybrid contribution 0.463 1.430 0.502 1.585 sum -4.505 -13.617 -18.222 23.189 Atomic orbital electron populations 1.70156 1.06452 1.25889 1.55140 1.25714 0.95996 1.01215 1.01304 0.85431 0.77695 0.79641 0.78217 1.20611 1.21880 1.20400 1.19438 0.92985 0.86426 1.40590 0.92174 1.44240 1.38046 1.02169 1.48757 1.20570 0.87961 0.97858 0.88314 1.21561 1.00000 0.93355 0.97957 1.21842 0.99278 0.90930 0.99622 1.23635 0.95853 1.01385 0.99544 1.21720 1.01131 1.00717 0.78627 0.85674 1.45117 1.51444 1.29583 1.06901 1.17408 0.79242 0.81676 0.83642 1.90763 1.39288 1.31318 1.84619 1.21407 1.09063 1.01969 0.94400 1.25371 0.94839 0.98292 0.81229 1.83786 1.58128 1.39887 1.23250 1.22961 1.03617 0.91557 0.97311 1.20107 0.86965 0.82975 0.78789 1.93035 1.95836 1.56244 1.73230 1.93056 1.50280 1.81095 1.93032 1.22660 1.00220 1.01570 0.89661 1.21531 0.95892 0.99618 0.95691 1.20977 0.97059 0.86050 0.93880 0.94051 0.92574 0.98080 0.93181 0.90529 0.87212 0.87692 0.75038 0.72638 0.79417 0.81488 0.90094 0.92907 0.93151 0.96325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.49 11.23 21.65 0.24 -53.24 16 2 C -0.05 -2.55 4.88 84.86 0.41 -2.14 16 3 Si 0.96 44.18 29.59 68.60 2.03 46.21 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.26 -14.32 9.54 84.03 0.80 -13.52 16 8 H 0.06 3.23 7.89 -2.91 -0.02 3.20 16 9 N -0.61 -29.67 2.94 -698.90 -2.05 -31.72 16 10 C 0.18 8.04 5.40 86.43 0.47 8.50 16 11 C -0.09 -2.96 5.37 30.77 0.17 -2.80 16 12 C -0.12 -3.39 1.94 -52.14 -0.10 -3.49 16 13 C -0.17 -4.04 9.86 30.55 0.30 -3.74 16 14 C 0.08 2.14 6.14 44.98 0.28 2.42 16 15 H 0.13 3.51 7.40 -2.39 -0.02 3.49 16 16 N -0.68 -15.02 5.34 -445.91 -2.38 -17.40 16 17 C 0.59 15.08 7.81 86.65 0.68 15.76 16 18 O -0.58 -19.49 16.55 -4.07 -0.07 -19.56 16 19 C -0.26 -5.26 6.31 -18.99 -0.12 -5.38 16 20 C 0.07 0.99 11.61 67.39 0.78 1.77 16 21 O -0.16 -2.41 10.50 4.43 0.05 -2.36 16 22 C -0.11 -1.62 6.90 24.76 0.17 -1.45 16 23 C 0.36 3.88 5.82 71.24 0.41 4.29 16 24 F -0.20 -3.06 17.30 44.97 0.78 -2.28 16 25 F -0.19 -2.81 17.01 44.97 0.76 -2.05 16 26 C -0.12 -2.29 10.54 23.65 0.25 -2.04 16 27 C -0.09 -2.84 5.83 30.77 0.18 -2.66 16 28 C 0.15 5.87 6.51 86.43 0.56 6.43 16 29 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.06 2.90 5.93 -2.38 -0.01 2.88 16 31 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.08 1.96 6.75 -2.39 -0.02 1.95 16 34 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.41 6.80 6.09 -92.71 -0.56 6.24 16 37 H 0.26 1.21 7.47 -2.91 -0.02 1.19 16 38 H 0.19 0.20 8.14 -2.38 -0.02 0.18 16 39 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 2.02 7.92 -2.38 -0.02 2.00 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -73.26 367.18 5.10 -68.16 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.50 Total: 12.30 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.24 Total: 1.95 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -4.19 Total: -102.37 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.02 Total: -21.92 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 1.54 Total: -4.33 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.26 5.10 -68.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016798941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.672 kcal (2) G-P(sol) polarization free energy of solvation -73.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds