Wall clock time and date at job start Sat Apr 11 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48497 * 109.46878 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46865 * 300.00005 * 3 2 1 6 6 H 1.48494 * 109.47311 * 59.99885 * 3 2 1 7 7 C 1.38817 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99538 * 197.86051 * 7 2 1 9 9 N 1.36938 * 119.99847 * 17.86739 * 7 2 1 10 10 C 1.46845 * 120.37554 * 208.90118 * 9 7 2 11 11 C 1.53351 * 108.81060 * 236.87938 * 10 9 7 12 12 C 1.53192 * 108.76839 * 308.68731 * 11 10 9 13 13 C 1.52835 * 117.65626 * 269.97236 * 12 11 10 14 14 C 1.52812 * 117.71212 * 201.11315 * 12 11 10 15 15 H 1.09004 * 117.52715 * 215.08478 * 14 12 11 16 16 N 1.46498 * 117.50323 * 0.13976 * 14 12 11 17 17 C 1.34777 * 119.99766 * 204.97155 * 16 14 12 18 18 O 1.21612 * 120.00373 * 0.02562 * 17 16 14 19 19 C 1.47386 * 120.00110 * 180.27475 * 17 16 14 20 20 C 1.36420 * 127.18790 * 359.41487 * 19 17 16 21 21 O 1.33654 * 108.39270 * 179.89318 * 20 19 17 22 22 C 1.34213 * 110.91044 * 0.38702 * 21 20 19 23 23 C 1.50702 * 125.43686 * 179.72800 * 22 21 20 24 24 F 1.39905 * 109.46821 * 120.03756 * 23 22 21 25 25 F 1.39891 * 109.46924 * 240.03866 * 23 22 21 26 26 C 1.34175 * 109.12217 * 359.76084 * 22 21 20 27 27 C 1.53179 * 115.07390 * 55.44677 * 12 11 10 28 28 C 1.46840 * 120.38758 * 28.87409 * 9 7 2 29 29 H 0.96996 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58001 * 117.08758 * 10 9 7 31 31 H 1.08999 * 109.58905 * 356.67894 * 10 9 7 32 32 H 1.08996 * 109.59013 * 188.89945 * 11 10 9 33 33 H 1.08999 * 109.58749 * 68.47133 * 11 10 9 34 34 H 1.09006 * 117.50459 * 144.81308 * 13 12 11 35 35 H 1.08999 * 117.53197 * 359.74950 * 13 12 11 36 36 H 0.96998 * 120.00445 * 24.97753 * 16 14 12 37 37 H 1.08001 * 125.79877 * 0.02812 * 20 19 17 38 38 H 1.08999 * 109.47016 * 0.04273 * 23 22 21 39 39 H 1.08003 * 127.02382 * 180.02562 * 26 22 21 40 40 H 1.08994 * 109.58921 * 64.34312 * 27 12 11 41 41 H 1.09005 * 109.58592 * 184.77498 * 27 12 11 42 42 H 1.08996 * 109.57794 * 242.92109 * 28 9 7 43 43 H 1.09000 * 109.57834 * 3.32208 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0511 -1.2246 0.2874 9 7 1.3750 -2.3597 -0.3628 10 6 1.8052 -3.6488 0.1933 11 6 2.1667 -4.5899 -0.9622 12 6 1.0059 -4.6119 -1.9616 13 6 -0.0883 -5.6587 -1.7551 14 6 0.9061 -5.8069 -2.9088 15 1 0.5380 -5.6207 -3.9177 16 7 1.9278 -6.8503 -2.7914 17 6 2.2157 -7.6335 -3.8498 18 8 1.6277 -7.4739 -4.9023 19 6 3.2392 -8.6872 -3.7301 20 6 3.9874 -8.9888 -2.6299 21 8 4.7949 -10.0090 -2.9358 22 6 4.6175 -10.3953 -4.2088 23 6 5.3623 -11.5112 -4.8952 24 9 4.4527 -12.4831 -5.3258 25 9 6.0555 -11.0002 -5.9976 26 6 3.6718 -9.6287 -4.7730 27 6 0.5856 -3.2402 -2.4986 28 6 0.2556 -2.3259 -1.3125 29 1 -0.4850 0.8400 0.0004 30 1 0.9943 -4.0832 0.7781 31 1 2.6776 -3.4996 0.8295 32 1 2.3353 -5.5951 -0.5758 33 1 3.0687 -4.2306 -1.4576 34 1 -1.1105 -5.3745 -2.0051 35 1 0.0173 -6.3378 -0.9092 36 1 2.3970 -6.9775 -1.9521 37 1 3.9344 -8.4896 -1.6737 38 1 6.0693 -11.9593 -4.1971 39 1 3.3033 -9.6909 -5.7863 40 1 1.4024 -2.8082 -3.0768 41 1 -0.2950 -3.3498 -3.1316 42 1 -0.6512 -2.6783 -0.8209 43 1 0.1083 -1.3059 -1.6674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016798944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:31 Heat of formation + Delta-G solvation = -69.990049 kcal Electronic energy + Delta-G solvation = -28808.487226 eV Core-core repulsion = 24299.736267 eV Total energy + Delta-G solvation = -4508.750960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.62257 -47.62684 -43.15816 -39.94987 -38.37749 -35.54652 -33.70534 -33.12330 -31.84828 -31.30902 -30.04081 -28.34120 -26.56370 -24.61555 -24.37312 -22.53316 -21.87394 -21.68493 -20.86229 -20.26282 -19.02893 -18.23312 -17.99227 -17.82057 -16.85593 -16.68633 -16.55275 -16.28232 -15.96494 -14.86896 -14.78863 -14.47976 -14.38827 -14.14637 -13.97371 -13.71681 -13.58900 -13.53548 -13.40122 -13.20517 -13.09267 -12.75211 -12.30760 -11.87391 -11.71564 -11.66203 -11.39255 -11.03294 -10.77162 -10.48238 -10.38513 -10.34849 -10.26122 -9.99417 -9.72850 -9.69193 -9.49705 -9.42285 -8.55303 -8.48515 -6.68104 -5.82221 -3.25594 0.76085 1.32591 1.79202 2.82924 3.04772 3.32988 3.34824 3.43285 3.45060 3.54128 3.99172 4.12072 4.14490 4.33728 4.37547 4.46794 4.84011 4.89916 5.00671 5.06250 5.07318 5.24138 5.36054 5.42347 5.58679 5.63922 5.79627 5.99025 6.00769 6.02173 6.23192 6.25547 6.37237 6.47035 6.56255 6.59475 6.64667 6.77956 6.90774 7.32415 7.34841 7.64018 7.76889 8.04198 8.43143 9.18391 9.81872 10.38123 11.25532 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023602 B = 0.002035 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.063662 B =13753.096157 C =14181.402025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.150 3.850 11 C -0.098 4.098 12 C -0.095 4.095 13 C -0.181 4.181 14 C 0.068 3.932 15 H 0.134 0.866 16 N -0.690 5.690 17 C 0.588 3.412 18 O -0.533 6.533 19 C -0.232 4.232 20 C 0.049 3.951 21 O -0.157 6.157 22 C -0.112 4.112 23 C 0.364 3.636 24 F -0.184 7.184 25 F -0.183 7.183 26 C -0.094 4.094 27 C -0.106 4.106 28 C 0.173 3.827 29 H 0.254 0.746 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.398 0.602 37 H 0.222 0.778 38 H 0.134 0.866 39 H 0.168 0.832 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.019 0.981 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.686 -22.945 -5.498 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.096 4.096 13 C -0.219 4.219 14 C -0.037 4.037 15 H 0.152 0.848 16 N -0.339 5.339 17 C 0.375 3.625 18 O -0.410 6.410 19 C -0.236 4.236 20 C -0.022 4.022 21 O -0.052 6.052 22 C -0.161 4.161 23 C 0.309 3.691 24 F -0.165 7.165 25 F -0.164 7.164 26 C -0.114 4.114 27 C -0.146 4.146 28 C 0.047 3.953 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.238 0.762 38 H 0.151 0.849 39 H 0.185 0.815 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.367 -22.843 -6.111 25.083 hybrid contribution 0.346 0.905 0.308 1.017 sum 8.713 -21.938 -5.803 24.308 Atomic orbital electron populations 1.70041 1.05287 1.25460 1.53677 1.25058 0.95260 0.98481 1.00824 0.86255 0.79409 0.83990 0.77300 1.20262 1.21516 1.21736 1.19213 0.92843 0.84999 1.41279 0.91757 1.43984 1.37860 1.01476 1.47845 1.20834 0.97414 0.87102 0.92362 1.21643 0.96288 0.98520 0.97258 1.21976 0.97952 0.91294 0.98418 1.23544 0.96274 1.02528 0.99580 1.21948 0.93043 0.91247 0.97434 0.84812 1.45214 1.40305 1.34486 1.13878 1.17104 0.81379 0.80158 0.83871 1.90801 1.51928 1.70237 1.28061 1.21590 1.04045 1.02870 0.95128 1.24683 0.89733 0.87971 0.99831 1.83674 1.52476 1.41932 1.27115 1.22379 1.05011 1.03918 0.84762 1.19021 0.84882 0.81364 0.83785 1.93084 1.69536 1.62760 1.91114 1.93085 1.78892 1.88004 1.56450 1.22674 0.95098 0.93122 1.00517 1.21890 0.99777 0.92993 0.99897 1.20773 0.88772 0.98742 0.87039 0.93643 0.96292 0.92712 0.93794 0.91672 0.88169 0.89006 0.76711 0.76167 0.84872 0.81456 0.92049 0.92923 0.96313 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 11.23 55.49 0.62 -25.02 16 2 C 0.00 0.07 4.88 -17.43 -0.09 -0.02 16 3 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.76 9.54 -15.06 -0.14 -6.91 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.17 2.94 -172.26 -0.51 -14.67 16 10 C 0.15 2.92 6.51 -3.67 -0.02 2.89 16 11 C -0.10 -1.50 5.37 -26.45 -0.14 -1.65 16 12 C -0.09 -1.48 1.94 -154.50 -0.30 -1.78 16 13 C -0.18 -2.47 9.86 -26.80 -0.26 -2.74 16 14 C 0.07 0.95 6.14 -68.01 -0.42 0.54 16 15 H 0.13 2.06 7.40 -51.93 -0.38 1.68 16 16 N -0.69 -8.10 5.34 -54.97 -0.29 -8.39 16 17 C 0.59 7.81 7.81 -12.54 -0.10 7.71 16 18 O -0.53 -9.18 16.55 5.27 0.09 -9.10 16 19 C -0.23 -2.43 6.31 -103.27 -0.65 -3.08 16 20 C 0.05 0.35 11.61 30.08 0.35 0.70 16 21 O -0.16 -1.20 10.52 7.65 0.08 -1.12 16 22 C -0.11 -0.93 6.71 -35.74 -0.24 -1.17 16 23 C 0.36 2.26 5.75 36.01 0.21 2.47 16 24 F -0.18 -1.43 17.32 2.25 0.04 -1.40 16 25 F -0.18 -1.46 17.32 2.25 0.04 -1.43 16 26 C -0.09 -0.97 10.90 -37.46 -0.41 -1.37 16 27 C -0.11 -1.96 5.83 -26.46 -0.15 -2.11 16 28 C 0.17 3.97 5.40 -3.67 -0.02 3.95 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 32 H 0.04 0.52 6.75 -51.93 -0.35 0.17 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.40 3.53 6.09 -40.82 -0.25 3.28 16 37 H 0.22 0.68 7.47 -52.49 -0.39 0.29 16 38 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 2.36 5.93 -51.93 -0.31 2.06 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -32.96 367.63 -7.26 -40.22 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.45 Total: 1.66 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.39 Total: -2.58 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.18 Total: -48.09 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.17 Total: -10.21 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.96 -7.26 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016798944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.775 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds