Wall clock time and date at job start Sat Apr 11 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48497 * 109.46878 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46865 * 300.00005 * 3 2 1 6 6 H 1.48494 * 109.47311 * 59.99885 * 3 2 1 7 7 C 1.38817 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99538 * 197.86051 * 7 2 1 9 9 N 1.36938 * 119.99847 * 17.86739 * 7 2 1 10 10 C 1.46845 * 120.37554 * 208.90118 * 9 7 2 11 11 C 1.53351 * 108.81060 * 236.87938 * 10 9 7 12 12 C 1.53192 * 108.76839 * 308.68731 * 11 10 9 13 13 C 1.52835 * 117.65626 * 269.97236 * 12 11 10 14 14 C 1.52812 * 117.71212 * 201.11315 * 12 11 10 15 15 H 1.09004 * 117.52715 * 215.08478 * 14 12 11 16 16 N 1.46498 * 117.50323 * 0.13976 * 14 12 11 17 17 C 1.34777 * 119.99766 * 204.97155 * 16 14 12 18 18 O 1.21612 * 120.00373 * 0.02562 * 17 16 14 19 19 C 1.47386 * 120.00110 * 180.27475 * 17 16 14 20 20 C 1.36420 * 127.18790 * 359.41487 * 19 17 16 21 21 O 1.33654 * 108.39270 * 179.89318 * 20 19 17 22 22 C 1.34213 * 110.91044 * 0.38702 * 21 20 19 23 23 C 1.50702 * 125.43686 * 179.72800 * 22 21 20 24 24 F 1.39905 * 109.46821 * 120.03756 * 23 22 21 25 25 F 1.39891 * 109.46924 * 240.03866 * 23 22 21 26 26 C 1.34175 * 109.12217 * 359.76084 * 22 21 20 27 27 C 1.53179 * 115.07390 * 55.44677 * 12 11 10 28 28 C 1.46840 * 120.38758 * 28.87409 * 9 7 2 29 29 H 0.96996 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58001 * 117.08758 * 10 9 7 31 31 H 1.08999 * 109.58905 * 356.67894 * 10 9 7 32 32 H 1.08996 * 109.59013 * 188.89945 * 11 10 9 33 33 H 1.08999 * 109.58749 * 68.47133 * 11 10 9 34 34 H 1.09006 * 117.50459 * 144.81308 * 13 12 11 35 35 H 1.08999 * 117.53197 * 359.74950 * 13 12 11 36 36 H 0.96998 * 120.00445 * 24.97753 * 16 14 12 37 37 H 1.08001 * 125.79877 * 0.02812 * 20 19 17 38 38 H 1.08999 * 109.47016 * 0.04273 * 23 22 21 39 39 H 1.08003 * 127.02382 * 180.02562 * 26 22 21 40 40 H 1.08994 * 109.58921 * 64.34312 * 27 12 11 41 41 H 1.09005 * 109.58592 * 184.77498 * 27 12 11 42 42 H 1.08996 * 109.57794 * 242.92109 * 28 9 7 43 43 H 1.09000 * 109.57834 * 3.32208 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0511 -1.2246 0.2874 9 7 1.3750 -2.3597 -0.3628 10 6 1.8052 -3.6488 0.1933 11 6 2.1667 -4.5899 -0.9622 12 6 1.0059 -4.6119 -1.9616 13 6 -0.0883 -5.6587 -1.7551 14 6 0.9061 -5.8069 -2.9088 15 1 0.5380 -5.6207 -3.9177 16 7 1.9278 -6.8503 -2.7914 17 6 2.2157 -7.6335 -3.8498 18 8 1.6277 -7.4739 -4.9023 19 6 3.2392 -8.6872 -3.7301 20 6 3.9874 -8.9888 -2.6299 21 8 4.7949 -10.0090 -2.9358 22 6 4.6175 -10.3953 -4.2088 23 6 5.3623 -11.5112 -4.8952 24 9 4.4527 -12.4831 -5.3258 25 9 6.0555 -11.0002 -5.9976 26 6 3.6718 -9.6287 -4.7730 27 6 0.5856 -3.2402 -2.4986 28 6 0.2556 -2.3259 -1.3125 29 1 -0.4850 0.8400 0.0004 30 1 0.9943 -4.0832 0.7781 31 1 2.6776 -3.4996 0.8295 32 1 2.3353 -5.5951 -0.5758 33 1 3.0687 -4.2306 -1.4576 34 1 -1.1105 -5.3745 -2.0051 35 1 0.0173 -6.3378 -0.9092 36 1 2.3970 -6.9775 -1.9521 37 1 3.9344 -8.4896 -1.6737 38 1 6.0693 -11.9593 -4.1971 39 1 3.3033 -9.6909 -5.7863 40 1 1.4024 -2.8082 -3.0768 41 1 -0.2950 -3.3498 -3.1316 42 1 -0.6512 -2.6783 -0.8209 43 1 0.1083 -1.3059 -1.6674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016798944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:30 Heat of formation + Delta-G solvation = -90.565295 kcal Electronic energy + Delta-G solvation = -28809.379436 eV Core-core repulsion = 24299.736267 eV Total energy + Delta-G solvation = -4509.643169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -50.15324 -48.17291 -43.79699 -41.07784 -39.64049 -37.13548 -34.77178 -34.08189 -33.37195 -32.17244 -31.58952 -29.93745 -27.14121 -26.23901 -25.42566 -24.04945 -23.08202 -22.41519 -22.25208 -21.19004 -19.89688 -19.63402 -18.53740 -18.37316 -18.25888 -17.62273 -17.18333 -17.16116 -17.08300 -16.67194 -15.83608 -15.71808 -15.47774 -15.23544 -15.03640 -14.91773 -14.71712 -14.52951 -14.39881 -14.16364 -14.07986 -13.85036 -13.75904 -13.30286 -13.10264 -12.88805 -12.61226 -12.55274 -12.37177 -12.24244 -12.00621 -11.77256 -11.41425 -11.35843 -11.21668 -11.12203 -10.72535 -10.47597 -10.15293 -9.69987 -8.61351 -7.85611 -5.31328 0.12630 0.56750 1.22983 1.45405 1.48452 1.57881 1.88506 2.11231 2.51917 2.86040 2.95697 3.05251 3.29507 3.36807 3.60858 3.64784 3.78403 3.80797 3.84355 3.87247 3.97976 4.09996 4.14236 4.34020 4.54489 4.62481 4.68334 4.74682 4.85793 4.89598 4.92043 4.95672 5.05216 5.09316 5.17341 5.32154 5.40412 5.44442 5.57168 5.61860 5.67285 5.78744 6.42370 6.43159 7.09640 7.17445 7.90519 8.40705 9.19523 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023602 B = 0.002035 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.063662 B =13753.096157 C =14181.402025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.144 3.856 11 C -0.084 4.084 12 C -0.112 4.112 13 C -0.166 4.166 14 C 0.083 3.917 15 H 0.116 0.884 16 N -0.676 5.676 17 C 0.589 3.411 18 O -0.584 6.584 19 C -0.268 4.268 20 C 0.086 3.914 21 O -0.148 6.148 22 C -0.105 4.105 23 C 0.362 3.638 24 F -0.195 7.195 25 F -0.196 7.196 26 C -0.125 4.125 27 C -0.096 4.096 28 C 0.181 3.819 29 H 0.249 0.751 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.415 0.585 37 H 0.268 0.732 38 H 0.181 0.819 39 H 0.154 0.846 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.000 1.000 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.774 -25.306 -4.084 27.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.248 4.248 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.332 5.332 10 C 0.018 3.982 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.205 4.205 14 C -0.023 4.023 15 H 0.134 0.866 16 N -0.326 5.326 17 C 0.378 3.622 18 O -0.465 6.465 19 C -0.272 4.272 20 C 0.015 3.985 21 O -0.042 6.042 22 C -0.154 4.154 23 C 0.309 3.691 24 F -0.176 7.176 25 F -0.177 7.177 26 C -0.145 4.145 27 C -0.135 4.135 28 C 0.055 3.945 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.254 0.746 37 H 0.284 0.716 38 H 0.198 0.802 39 H 0.172 0.828 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.018 0.982 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.498 -25.247 -4.668 27.738 hybrid contribution -0.303 1.594 -0.106 1.626 sum 10.195 -23.652 -4.774 26.195 Atomic orbital electron populations 1.70183 1.06646 1.25674 1.55494 1.25774 0.95972 1.01457 1.01554 0.85291 0.78778 0.80241 0.76657 1.19034 1.22010 1.21963 1.19534 0.93091 0.86275 1.39970 0.91590 1.44255 1.37846 1.02557 1.48573 1.21031 0.97302 0.85834 0.93993 1.21487 0.95556 0.99877 0.95338 1.21821 0.99555 0.90206 0.99792 1.23636 0.95723 1.01178 0.99915 1.21630 0.93476 0.90592 0.96615 0.86585 1.45018 1.39744 1.33408 1.14394 1.17474 0.81193 0.80320 0.83185 1.90776 1.53943 1.71765 1.30025 1.21381 1.05430 1.03503 0.96906 1.25462 0.86885 0.86167 1.00003 1.83726 1.52146 1.41801 1.26527 1.22645 1.04203 1.03745 0.84844 1.19538 0.85109 0.80641 0.83843 1.93061 1.70212 1.63042 1.91298 1.93059 1.79033 1.88239 1.57352 1.22751 0.96628 0.94551 1.00594 1.21640 0.99847 0.94095 0.97927 1.20513 0.88185 0.97528 0.88285 0.94210 0.96282 0.92481 0.88982 0.92344 0.88291 0.86616 0.74642 0.71641 0.80184 0.82816 0.93429 0.91752 0.98172 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 11.23 21.65 0.24 -54.68 16 2 C -0.05 -2.89 4.88 84.86 0.41 -2.48 16 3 Si 0.96 44.55 29.59 68.60 2.03 46.58 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.26 -13.87 9.54 84.03 0.80 -13.07 16 8 H 0.07 3.45 7.89 -2.92 -0.02 3.42 16 9 N -0.61 -29.40 2.94 -698.91 -2.05 -31.45 16 10 C 0.14 5.35 6.51 86.43 0.56 5.92 16 11 C -0.08 -2.31 5.37 30.78 0.17 -2.15 16 12 C -0.11 -3.29 1.94 -52.17 -0.10 -3.39 16 13 C -0.17 -4.08 9.86 30.55 0.30 -3.78 16 14 C 0.08 2.15 6.14 44.94 0.28 2.42 16 15 H 0.12 3.52 7.40 -2.38 -0.02 3.50 16 16 N -0.68 -13.82 5.34 -446.09 -2.38 -16.21 16 17 C 0.59 14.83 7.81 86.65 0.68 15.50 16 18 O -0.58 -20.38 16.55 -4.07 -0.07 -20.45 16 19 C -0.27 -5.07 6.31 -18.99 -0.12 -5.19 16 20 C 0.09 0.86 11.61 67.40 0.78 1.64 16 21 O -0.15 -1.67 10.52 4.47 0.05 -1.62 16 22 C -0.11 -1.51 6.71 24.76 0.17 -1.35 16 23 C 0.36 3.67 5.75 71.24 0.41 4.08 16 24 F -0.20 -2.77 17.32 44.97 0.78 -1.99 16 25 F -0.20 -2.86 17.32 44.97 0.78 -2.08 16 26 C -0.13 -2.49 10.90 23.65 0.26 -2.23 16 27 C -0.10 -3.55 5.83 30.77 0.18 -3.37 16 28 C 0.18 8.54 5.40 86.43 0.47 9.01 16 29 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 2.07 7.92 -2.39 -0.02 2.05 16 32 H 0.09 1.67 6.75 -2.39 -0.02 1.65 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.42 5.30 6.09 -92.71 -0.56 4.74 16 37 H 0.27 -0.13 7.47 -2.91 -0.02 -0.15 16 38 H 0.18 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 2.18 8.10 -2.38 -0.02 2.16 16 42 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.05 2.83 5.93 -2.39 -0.01 2.82 16 Total: -1.00 -76.14 367.63 5.11 -71.03 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.50 Total: 9.31 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.24 Total: 1.56 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -4.19 Total: -102.34 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.02 Total: -22.07 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 1.56 Total: -4.07 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.14 5.11 -71.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016798944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.536 kcal (2) G-P(sol) polarization free energy of solvation -76.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds