Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99846 * 2 1 4 4 H 1.48498 * 109.47059 * 92.96247 * 3 2 1 5 5 H 1.48503 * 109.47024 * 212.96488 * 3 2 1 6 6 H 1.48496 * 109.47060 * 332.96006 * 3 2 1 7 7 C 1.38807 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00373 * 19.01879 * 7 2 1 9 9 N 1.36940 * 120.00375 * 199.02082 * 7 2 1 10 10 C 1.46839 * 120.38082 * 210.43373 * 9 7 2 11 11 C 1.52875 * 109.07233 * 236.84841 * 10 9 7 12 12 C 1.53181 * 108.82510 * 308.91731 * 11 10 9 13 13 C 1.52844 * 117.65478 * 269.84625 * 12 11 10 14 14 C 1.52819 * 117.71305 * 200.99040 * 12 11 10 15 15 H 1.08994 * 117.49988 * 215.09830 * 14 12 11 16 16 N 1.46502 * 117.50227 * 0.13362 * 14 12 11 17 17 C 1.34771 * 120.00238 * 205.00330 * 16 14 12 18 18 O 1.21695 * 119.99941 * 0.02562 * 17 16 14 19 19 C 1.46656 * 120.00153 * 180.02562 * 17 16 14 20 20 C 1.36547 * 125.99021 * 179.97438 * 19 17 16 21 21 C 1.40353 * 106.70884 * 179.97438 * 20 19 17 22 22 C 1.35128 * 107.12132 * 359.97438 * 21 20 19 23 23 C 1.50698 * 125.62156 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.46918 * 299.99812 * 23 22 21 25 25 F 1.39898 * 109.47091 * 59.99879 * 23 22 21 26 26 O 1.33937 * 108.76036 * 359.75565 * 22 21 20 27 27 C 1.53180 * 115.07803 * 55.31602 * 12 11 10 28 28 C 1.46844 * 120.37606 * 30.69922 * 9 7 2 29 29 H 0.96999 * 120.00083 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58204 * 356.68377 * 10 9 7 31 31 H 1.09000 * 109.58060 * 117.09112 * 10 9 7 32 32 H 1.08998 * 109.66431 * 189.04710 * 11 10 9 33 33 H 1.08996 * 109.44712 * 68.65348 * 11 10 9 34 34 H 1.09005 * 117.50506 * 359.75868 * 13 12 11 35 35 H 1.09002 * 117.50476 * 144.81106 * 13 12 11 36 36 H 0.97005 * 120.00024 * 24.99898 * 16 14 12 37 37 H 1.08005 * 126.63808 * 359.95574 * 20 19 17 38 38 H 1.08008 * 126.44368 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47004 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.59110 * 184.76466 * 27 12 11 41 41 H 1.08998 * 109.58959 * 64.33257 * 27 12 11 42 42 H 1.08999 * 109.57594 * 242.91248 * 28 9 7 43 43 H 1.08997 * 109.58075 * 3.30970 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5603 2.0103 1.3982 5 1 3.5150 1.4591 -0.7618 6 1 1.4177 2.6699 -0.6365 7 6 2.0103 -1.2021 -0.0005 8 1 1.5146 -2.1118 -0.3057 9 7 3.3236 -1.2347 0.3859 10 6 4.2427 -2.2248 -0.1895 11 6 4.8639 -3.0458 0.9405 12 6 5.4357 -2.0882 1.9906 13 6 6.8891 -1.6438 1.8289 14 6 6.5076 -2.6285 2.9364 15 1 6.5075 -2.2579 3.9614 16 7 6.9152 -4.0258 2.7693 17 6 7.4352 -4.7051 3.8107 18 8 7.5658 -4.1581 4.8899 19 6 7.8438 -6.1036 3.6433 20 6 8.3824 -6.9035 4.6101 21 6 8.6187 -8.1525 4.0151 22 6 8.2187 -8.0618 2.7276 23 6 8.2869 -9.1688 1.7073 24 9 9.6170 -9.5705 1.5433 25 9 7.5223 -10.2551 2.1460 26 8 7.7470 -6.8275 2.5089 27 6 4.4388 -1.0694 2.5514 28 6 3.8275 -0.2837 1.3849 29 1 -0.4850 0.8400 -0.0004 30 1 3.6941 -2.8861 -0.8602 31 1 5.0313 -1.7135 -0.7418 32 1 5.6630 -3.6715 0.5429 33 1 4.0982 -3.6732 1.3966 34 1 7.4434 -2.0356 0.9759 35 1 7.1400 -0.6253 2.1253 36 1 6.8107 -4.4620 1.9092 37 1 8.5871 -6.6281 5.6342 38 1 9.0403 -9.0228 4.4961 39 1 7.8953 -8.8101 0.7553 40 1 4.9557 -0.3836 3.2227 41 1 3.6501 -1.5903 3.0942 42 1 4.5895 0.3513 0.9330 43 1 3.0057 0.3322 1.7501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016954233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = -63.079189 kcal Electronic energy + Delta-G solvation = -29109.235071 eV Core-core repulsion = 24600.783789 eV Total energy + Delta-G solvation = -4508.451282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -49.67373 -47.67615 -43.31025 -40.15519 -38.67020 -35.88250 -33.95902 -33.29759 -31.91938 -31.48310 -30.59383 -28.80749 -27.12508 -24.25562 -23.76839 -23.07799 -22.28903 -21.74078 -21.08794 -20.64785 -19.13434 -18.46076 -18.05332 -17.94703 -17.72637 -16.74244 -16.66082 -16.35904 -15.38659 -14.87784 -14.84147 -14.51651 -14.37621 -14.24355 -14.08217 -14.02196 -13.78963 -13.69159 -13.58517 -13.51245 -13.02521 -12.98666 -12.38868 -12.22093 -11.97860 -11.91078 -11.77535 -11.37135 -10.80892 -10.70024 -10.65991 -10.65308 -10.40107 -10.05027 -9.85509 -9.63963 -9.48419 -9.42167 -8.85153 -8.53607 -6.95462 -5.97920 -3.36931 0.36246 1.64179 1.64781 2.65071 2.73511 3.28668 3.28862 3.45898 3.49107 3.51482 3.91911 3.95458 4.28170 4.28793 4.39140 4.50109 4.69257 4.83460 4.87423 4.99896 5.03592 5.05640 5.23295 5.23924 5.38070 5.58511 5.69941 5.78673 5.81373 5.84270 5.99389 6.06890 6.11298 6.25376 6.28944 6.30834 6.38559 6.56736 6.65046 6.66313 6.89892 7.12887 7.72477 7.97179 8.31486 8.92564 9.69194 10.07731 11.18168 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.002366 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.719766 B =11831.600680 C =12710.425726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.886 3.114 4 H -0.286 1.286 5 H -0.272 1.272 6 H -0.304 1.304 7 C -0.263 4.263 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.100 4.100 12 C -0.098 4.098 13 C -0.180 4.180 14 C 0.069 3.931 15 H 0.138 0.862 16 N -0.681 5.681 17 C 0.604 3.396 18 O -0.513 6.513 19 C -0.042 4.042 20 C -0.126 4.126 21 C -0.157 4.157 22 C -0.080 4.080 23 C 0.360 3.640 24 F -0.183 7.183 25 F -0.182 7.182 26 O -0.146 6.146 27 C -0.098 4.098 28 C 0.128 3.872 29 H 0.263 0.737 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.407 0.593 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.136 0.864 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.844 -15.962 5.158 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.716 3.284 4 H -0.213 1.213 5 H -0.197 1.197 6 H -0.232 1.232 7 C -0.391 4.391 8 H 0.101 0.899 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.140 4.140 12 C -0.100 4.100 13 C -0.219 4.219 14 C -0.036 4.036 15 H 0.156 0.844 16 N -0.329 5.329 17 C 0.389 3.611 18 O -0.390 6.390 19 C -0.095 4.095 20 C -0.146 4.146 21 C -0.177 4.177 22 C -0.133 4.133 23 C 0.306 3.694 24 F -0.164 7.164 25 F -0.163 7.163 26 O -0.042 6.042 27 C -0.138 4.138 28 C 0.003 3.997 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.243 0.757 37 H 0.188 0.812 38 H 0.183 0.817 39 H 0.153 0.847 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.648 -15.394 5.611 25.583 hybrid contribution 0.556 0.544 -0.187 0.800 sum 20.204 -14.851 5.424 25.655 Atomic orbital electron populations 1.69823 1.05778 1.26646 1.52883 1.25356 0.95228 0.97684 0.99142 0.86948 0.79731 0.84416 0.77291 1.21322 1.19735 1.23174 1.18906 0.84288 0.94474 1.41444 0.89907 1.44262 1.07548 1.37004 1.43911 1.20765 0.92489 0.91326 0.92732 1.21569 0.99083 0.96690 0.96609 1.21964 0.89976 0.99511 0.98507 1.23592 0.98519 0.99595 1.00163 1.21978 1.03961 0.79828 0.97843 0.84426 1.45307 1.61673 1.12639 1.13325 1.16425 0.77926 0.82064 0.84668 1.90906 1.55360 1.67101 1.25678 1.22375 1.08295 0.93726 0.85087 1.22039 0.99667 0.91887 1.01013 1.21734 1.03193 0.99724 0.93020 1.22877 1.06515 0.86411 0.97452 1.19102 0.75162 0.79343 0.95796 1.93083 1.35919 1.91273 1.96082 1.93089 1.75138 1.56381 1.91649 1.83963 1.64034 1.20545 1.35624 1.21699 0.97096 0.96414 0.98586 1.21370 0.97248 0.92151 0.88953 0.92709 0.91705 0.95866 0.93171 0.91174 0.88648 0.87972 0.75677 0.81231 0.81738 0.84651 0.92423 0.90996 0.95662 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.54 13.97 55.49 0.78 -26.77 16 2 C 0.03 0.71 5.24 -17.43 -0.09 0.62 16 3 Si 0.89 22.04 24.44 -169.99 -4.15 17.88 16 4 H -0.29 -6.78 6.39 56.52 0.36 -6.42 16 5 H -0.27 -6.68 7.02 56.52 0.40 -6.29 16 6 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 7 C -0.26 -7.17 9.98 -15.06 -0.15 -7.32 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 N -0.60 -13.80 2.68 -172.55 -0.46 -14.26 16 10 C 0.15 2.82 6.48 -3.92 -0.03 2.80 16 11 C -0.10 -1.49 5.36 -26.70 -0.14 -1.63 16 12 C -0.10 -1.42 1.94 -154.50 -0.30 -1.72 16 13 C -0.18 -2.21 9.86 -26.80 -0.26 -2.48 16 14 C 0.07 0.88 6.14 -68.01 -0.42 0.46 16 15 H 0.14 1.87 7.40 -51.93 -0.38 1.48 16 16 N -0.68 -7.84 5.34 -55.20 -0.29 -8.14 16 17 C 0.60 7.55 7.79 -12.87 -0.10 7.45 16 18 O -0.51 -7.84 16.43 5.19 0.09 -7.76 16 19 C -0.04 -0.44 7.13 -36.80 -0.26 -0.71 16 20 C -0.13 -1.17 10.62 -39.40 -0.42 -1.59 16 21 C -0.16 -1.26 10.77 -39.89 -0.43 -1.69 16 22 C -0.08 -0.65 6.75 -35.42 -0.24 -0.89 16 23 C 0.36 2.18 5.76 36.00 0.21 2.39 16 24 F -0.18 -1.32 17.32 2.25 0.04 -1.28 16 25 F -0.18 -1.37 17.32 2.25 0.04 -1.33 16 26 O -0.15 -1.37 10.40 4.99 0.05 -1.32 16 27 C -0.10 -1.67 5.83 -26.46 -0.15 -1.82 16 28 C 0.13 2.69 4.23 -3.67 -0.02 2.67 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.06 1.20 7.92 -51.93 -0.41 0.79 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.59 6.75 -51.93 -0.35 0.24 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.41 4.02 6.87 -40.82 -0.28 3.74 16 37 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 43 H 0.08 1.77 4.36 -51.93 -0.23 1.55 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -32.23 362.49 -6.71 -38.93 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.45 Total: 2.02 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.80 Total: -3.46 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.02 Total: -49.16 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.14 Total: -9.07 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.08 Total: -2.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.23 -6.71 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016954233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.146 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds