Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99846 * 2 1 4 4 H 1.48498 * 109.47059 * 92.96247 * 3 2 1 5 5 H 1.48503 * 109.47024 * 212.96488 * 3 2 1 6 6 H 1.48496 * 109.47060 * 332.96006 * 3 2 1 7 7 C 1.38807 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00373 * 19.01879 * 7 2 1 9 9 N 1.36940 * 120.00375 * 199.02082 * 7 2 1 10 10 C 1.46839 * 120.38082 * 210.43373 * 9 7 2 11 11 C 1.52875 * 109.07233 * 236.84841 * 10 9 7 12 12 C 1.53181 * 108.82510 * 308.91731 * 11 10 9 13 13 C 1.52844 * 117.65478 * 269.84625 * 12 11 10 14 14 C 1.52819 * 117.71305 * 200.99040 * 12 11 10 15 15 H 1.08994 * 117.49988 * 215.09830 * 14 12 11 16 16 N 1.46502 * 117.50227 * 0.13362 * 14 12 11 17 17 C 1.34771 * 120.00238 * 205.00330 * 16 14 12 18 18 O 1.21695 * 119.99941 * 0.02562 * 17 16 14 19 19 C 1.46656 * 120.00153 * 180.02562 * 17 16 14 20 20 C 1.36547 * 125.99021 * 179.97438 * 19 17 16 21 21 C 1.40353 * 106.70884 * 179.97438 * 20 19 17 22 22 C 1.35128 * 107.12132 * 359.97438 * 21 20 19 23 23 C 1.50698 * 125.62156 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.46918 * 299.99812 * 23 22 21 25 25 F 1.39898 * 109.47091 * 59.99879 * 23 22 21 26 26 O 1.33937 * 108.76036 * 359.75565 * 22 21 20 27 27 C 1.53180 * 115.07803 * 55.31602 * 12 11 10 28 28 C 1.46844 * 120.37606 * 30.69922 * 9 7 2 29 29 H 0.96999 * 120.00083 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58204 * 356.68377 * 10 9 7 31 31 H 1.09000 * 109.58060 * 117.09112 * 10 9 7 32 32 H 1.08998 * 109.66431 * 189.04710 * 11 10 9 33 33 H 1.08996 * 109.44712 * 68.65348 * 11 10 9 34 34 H 1.09005 * 117.50506 * 359.75868 * 13 12 11 35 35 H 1.09002 * 117.50476 * 144.81106 * 13 12 11 36 36 H 0.97005 * 120.00024 * 24.99898 * 16 14 12 37 37 H 1.08005 * 126.63808 * 359.95574 * 20 19 17 38 38 H 1.08008 * 126.44368 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47004 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.59110 * 184.76466 * 27 12 11 41 41 H 1.08998 * 109.58959 * 64.33257 * 27 12 11 42 42 H 1.08999 * 109.57594 * 242.91248 * 28 9 7 43 43 H 1.08997 * 109.58075 * 3.30970 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5603 2.0103 1.3982 5 1 3.5150 1.4591 -0.7618 6 1 1.4177 2.6699 -0.6365 7 6 2.0103 -1.2021 -0.0005 8 1 1.5146 -2.1118 -0.3057 9 7 3.3236 -1.2347 0.3859 10 6 4.2427 -2.2248 -0.1895 11 6 4.8639 -3.0458 0.9405 12 6 5.4357 -2.0882 1.9906 13 6 6.8891 -1.6438 1.8289 14 6 6.5076 -2.6285 2.9364 15 1 6.5075 -2.2579 3.9614 16 7 6.9152 -4.0258 2.7693 17 6 7.4352 -4.7051 3.8107 18 8 7.5658 -4.1581 4.8899 19 6 7.8438 -6.1036 3.6433 20 6 8.3824 -6.9035 4.6101 21 6 8.6187 -8.1525 4.0151 22 6 8.2187 -8.0618 2.7276 23 6 8.2869 -9.1688 1.7073 24 9 9.6170 -9.5705 1.5433 25 9 7.5223 -10.2551 2.1460 26 8 7.7470 -6.8275 2.5089 27 6 4.4388 -1.0694 2.5514 28 6 3.8275 -0.2837 1.3849 29 1 -0.4850 0.8400 -0.0004 30 1 3.6941 -2.8861 -0.8602 31 1 5.0313 -1.7135 -0.7418 32 1 5.6630 -3.6715 0.5429 33 1 4.0982 -3.6732 1.3966 34 1 7.4434 -2.0356 0.9759 35 1 7.1400 -0.6253 2.1253 36 1 6.8107 -4.4620 1.9092 37 1 8.5871 -6.6281 5.6342 38 1 9.0403 -9.0228 4.4961 39 1 7.8953 -8.8101 0.7553 40 1 4.9557 -0.3836 3.2227 41 1 3.6501 -1.5903 3.0942 42 1 4.5895 0.3513 0.9330 43 1 3.0057 0.3322 1.7501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016954233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = -83.781082 kcal Electronic energy + Delta-G solvation = -29110.132772 eV Core-core repulsion = 24600.783789 eV Total energy + Delta-G solvation = -4509.348984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -50.18476 -48.19505 -43.99280 -41.19840 -39.85012 -37.36923 -34.87063 -34.31958 -33.66385 -32.27698 -32.03396 -30.31174 -27.79288 -26.04843 -24.66690 -24.39955 -23.04588 -22.90152 -22.33421 -21.51454 -20.02019 -19.76704 -18.67874 -18.59415 -18.31107 -18.26612 -17.57471 -17.41801 -17.04076 -15.97305 -15.92837 -15.79482 -15.54387 -15.18366 -15.05034 -14.90281 -14.66788 -14.54556 -14.43550 -14.34780 -14.26906 -14.07589 -13.98319 -13.86502 -13.47403 -12.97806 -12.65180 -12.46752 -12.40229 -12.26892 -12.13711 -11.69779 -11.64416 -11.50959 -11.32269 -11.30501 -10.79137 -10.66315 -10.17627 -9.75661 -8.82997 -8.16204 -5.50469 -0.38105 0.96266 0.97636 1.31023 1.42160 1.51845 1.78389 1.86071 2.42815 2.71318 2.86605 3.01811 3.08440 3.35702 3.47536 3.64386 3.66963 3.73149 3.77691 3.80652 3.87898 4.00088 4.31096 4.37171 4.37627 4.49726 4.55796 4.65294 4.70361 4.79094 4.82952 4.91159 4.91965 5.00503 5.06017 5.10311 5.21213 5.28268 5.29071 5.48496 5.50492 5.90831 6.14792 6.24253 6.82184 6.96008 7.64899 8.05688 9.04025 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.002366 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.719766 B =11831.600680 C =12710.425726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.036 4.036 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.262 1.262 6 H -0.313 1.313 7 C -0.249 4.249 8 H 0.047 0.953 9 N -0.619 5.619 10 C 0.147 3.853 11 C -0.088 4.088 12 C -0.119 4.119 13 C -0.159 4.159 14 C 0.080 3.920 15 H 0.131 0.869 16 N -0.674 5.674 17 C 0.606 3.394 18 O -0.548 6.548 19 C -0.065 4.065 20 C -0.122 4.122 21 C -0.164 4.164 22 C -0.077 4.077 23 C 0.362 3.638 24 F -0.188 7.188 25 F -0.190 7.190 26 O -0.146 6.146 27 C -0.091 4.091 28 C 0.124 3.876 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.416 0.584 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.173 0.827 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.039 0.961 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.169 -16.609 5.076 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.230 4.230 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.186 1.186 6 H -0.242 1.242 7 C -0.379 4.379 8 H 0.065 0.935 9 N -0.344 5.344 10 C 0.022 3.978 11 C -0.127 4.127 12 C -0.120 4.120 13 C -0.197 4.197 14 C -0.026 4.026 15 H 0.148 0.852 16 N -0.323 5.323 17 C 0.393 3.607 18 O -0.428 6.428 19 C -0.118 4.118 20 C -0.142 4.142 21 C -0.183 4.183 22 C -0.130 4.130 23 C 0.308 3.692 24 F -0.169 7.169 25 F -0.171 7.171 26 O -0.042 6.042 27 C -0.131 4.131 28 C -0.001 4.001 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.254 0.746 37 H 0.195 0.805 38 H 0.203 0.797 39 H 0.189 0.811 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 23.028 -16.071 5.521 28.619 hybrid contribution -0.452 0.566 -0.148 0.739 sum 22.576 -15.505 5.373 27.909 Atomic orbital electron populations 1.69966 1.07564 1.27251 1.55831 1.26010 0.95833 1.01206 0.99999 0.85887 0.78360 0.79779 0.78072 1.19515 1.18606 1.24241 1.18848 0.86334 0.93114 1.39622 0.93495 1.44403 1.06606 1.38341 1.45014 1.20956 0.92029 0.90726 0.94041 1.21398 0.99574 0.96373 0.95370 1.21802 0.90723 0.99862 0.99611 1.23704 0.95819 1.00068 1.00118 1.21806 1.02527 0.80669 0.97598 0.85174 1.45223 1.61224 1.12219 1.13617 1.16573 0.77320 0.82634 0.84185 1.90884 1.56897 1.68108 1.26876 1.22062 1.10333 0.93373 0.86058 1.22291 0.98489 0.92220 1.01247 1.22044 1.03227 0.99921 0.93154 1.23389 1.05172 0.86309 0.98143 1.19451 0.74830 0.78343 0.96534 1.93073 1.36542 1.91267 1.96056 1.93075 1.75349 1.56809 1.91873 1.83936 1.64235 1.20913 1.35100 1.21532 0.97336 0.96994 0.97197 1.21394 0.96645 0.92214 0.89873 0.93004 0.92669 0.94174 0.89326 0.92996 0.86775 0.86861 0.74593 0.80538 0.79722 0.81053 0.89896 0.93091 0.94351 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.49 13.97 21.65 0.30 -60.19 16 2 C -0.04 -2.09 5.24 84.86 0.44 -1.64 16 3 Si 0.95 46.08 24.44 68.60 1.68 47.76 16 4 H -0.27 -12.16 6.39 99.48 0.64 -11.53 16 5 H -0.26 -12.07 7.02 99.48 0.70 -11.38 16 6 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 7 C -0.25 -14.00 9.98 84.03 0.84 -13.16 16 8 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 9 N -0.62 -28.07 2.68 -699.84 -1.87 -29.94 16 10 C 0.15 5.21 6.48 86.27 0.56 5.77 16 11 C -0.09 -2.42 5.36 30.61 0.16 -2.25 16 12 C -0.12 -3.12 1.94 -52.17 -0.10 -3.22 16 13 C -0.16 -3.23 9.86 30.55 0.30 -2.93 16 14 C 0.08 1.81 6.14 44.94 0.28 2.08 16 15 H 0.13 3.25 7.40 -2.39 -0.02 3.23 16 16 N -0.67 -13.83 5.34 -446.77 -2.39 -16.21 16 17 C 0.61 14.20 7.79 86.44 0.67 14.88 16 18 O -0.55 -16.23 16.43 -4.33 -0.07 -16.30 16 19 C -0.07 -1.28 7.13 24.07 0.17 -1.11 16 20 C -0.12 -2.07 10.62 22.39 0.24 -1.84 16 21 C -0.16 -2.27 10.77 22.07 0.24 -2.03 16 22 C -0.08 -1.07 6.75 24.97 0.17 -0.90 16 23 C 0.36 3.36 5.76 71.24 0.41 3.77 16 24 F -0.19 -2.24 17.32 44.97 0.78 -1.46 16 25 F -0.19 -2.43 17.32 44.97 0.78 -1.65 16 26 O -0.15 -2.39 10.40 -5.06 -0.05 -2.45 16 27 C -0.09 -2.94 5.83 30.77 0.18 -2.76 16 28 C 0.12 5.00 4.23 86.43 0.37 5.37 16 29 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.74 6.75 -2.39 -0.02 1.73 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.42 6.89 6.87 -92.70 -0.64 6.25 16 37 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.17 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.46 7.44 -2.39 -0.02 1.45 16 43 H 0.05 2.22 4.36 -2.39 -0.01 2.21 16 Total: -1.00 -72.42 362.49 4.43 -67.99 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.35 Total: 12.43 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 4.93 Total: 0.02 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -3.96 Total: -106.34 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.12 Total: -18.75 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 1.56 Total: -3.11 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.68 Total: 47.76 kcal Total: -72.42 4.43 -67.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016954233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.790 kcal (2) G-P(sol) polarization free energy of solvation -72.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds