Wall clock time and date at job start Sat Apr 11 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48501 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47078 * 299.99989 * 3 2 1 6 6 H 1.48510 * 109.47162 * 59.99713 * 3 2 1 7 7 C 1.38654 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00135 * 180.02562 * 7 2 1 9 9 O 1.34822 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.35759 * 117.00442 * 185.05722 * 9 7 2 11 11 C 1.38884 * 120.06274 * 354.46464 * 10 9 7 12 12 C 1.38096 * 119.92793 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.06989 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.92811 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47128 * 89.99934 * 14 13 12 16 16 C 1.46900 * 111.00114 * 179.97438 * 15 14 13 17 17 H 1.09002 * 112.90497 * 336.25200 * 16 15 14 18 18 C 1.53781 * 113.61585 * 107.49966 * 16 15 14 19 19 C 1.53784 * 87.07763 * 139.98282 * 18 16 15 20 20 H 1.09003 * 113.61458 * 220.01654 * 19 18 16 21 21 N 1.46497 * 113.61313 * 89.12022 * 19 18 16 22 22 C 1.34783 * 120.00105 * 107.50073 * 21 19 18 23 23 O 1.21277 * 120.00192 * 0.02562 * 22 21 19 24 24 C 1.50700 * 119.99730 * 179.97438 * 22 21 19 25 25 F 1.39899 * 109.46671 * 185.00079 * 24 22 21 26 26 F 1.39898 * 109.47153 * 304.99800 * 24 22 21 27 27 C 1.53782 * 87.08347 * 334.56601 * 19 18 16 28 28 C 1.38301 * 120.13945 * 0.27152 * 13 12 11 29 29 C 1.38098 * 120.06409 * 359.49541 * 28 13 12 30 30 H 0.97002 * 120.00144 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.03840 * 0.02562 * 11 10 9 32 32 H 1.08007 * 119.96514 * 179.97438 * 12 11 10 33 33 H 1.08997 * 109.47056 * 329.99803 * 14 13 12 34 34 H 1.09004 * 109.46851 * 209.99919 * 14 13 12 35 35 H 1.00898 * 111.00235 * 56.04191 * 15 14 13 36 36 H 1.09001 * 113.61292 * 25.43585 * 18 16 15 37 37 H 1.08994 * 113.69199 * 254.54385 * 18 16 15 38 38 H 0.96998 * 120.00290 * 287.49356 * 21 19 18 39 39 H 1.08993 * 109.47286 * 65.00065 * 24 22 21 40 40 H 1.08998 * 113.60832 * 139.97962 * 27 19 18 41 41 H 1.08995 * 113.61364 * 270.88440 * 27 19 18 42 42 H 1.07997 * 119.96340 * 179.72464 * 28 13 12 43 43 H 1.08007 * 120.03145 * 180.25260 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4571 -3.4395 0.0953 12 6 4.2022 -4.5970 0.2050 13 6 3.5684 -5.8201 0.3277 14 6 4.3847 -7.0813 0.4466 15 7 4.6570 -7.3565 1.8637 16 6 5.4521 -8.5820 2.0187 17 1 5.3501 -9.2635 1.1741 18 6 6.9115 -8.3219 2.4276 19 6 6.7855 -9.5403 3.3574 20 1 7.2722 -9.4046 4.3233 21 7 7.1385 -10.8083 2.7143 22 6 8.2910 -11.4290 3.0355 23 8 9.0355 -10.9381 3.8573 24 6 8.6537 -12.7337 2.3742 25 9 9.8264 -13.2368 2.9476 26 9 7.6147 -13.6529 2.5550 27 6 5.2730 -9.2637 3.3854 28 6 2.1871 -5.8887 0.3353 29 6 1.4365 -4.7343 0.2308 30 1 -0.4850 0.8401 -0.0004 31 1 3.9527 -2.4845 0.0007 32 1 5.2811 -4.5470 0.1950 33 1 5.3269 -6.9559 -0.0868 34 1 3.8307 -7.9147 0.0146 35 1 3.7995 -7.4129 2.3924 36 1 7.0552 -7.3806 2.9582 37 1 7.6256 -8.4637 1.6164 38 1 6.5428 -11.2012 2.0573 39 1 8.8120 -12.5692 1.3085 40 1 4.6634 -10.1664 3.3466 41 1 4.9688 -8.5800 4.1779 42 1 1.6952 -6.8458 0.4268 43 1 0.3578 -4.7882 0.2409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019912862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:53 Heat of formation + Delta-G solvation = -112.479636 kcal Electronic energy + Delta-G solvation = -27594.104241 eV Core-core repulsion = 23083.510794 eV Total energy + Delta-G solvation = -4510.593446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -49.71966 -47.74437 -40.74122 -39.18782 -38.78655 -36.87617 -34.89853 -33.22959 -32.24032 -30.20918 -29.49926 -28.48477 -26.15702 -25.69996 -24.62126 -23.14758 -21.99805 -21.92021 -20.49774 -19.78895 -19.08835 -18.33814 -18.01221 -17.88858 -16.98751 -16.68628 -16.04436 -15.75526 -15.21985 -15.13439 -14.88967 -14.55612 -14.52078 -14.35017 -14.15776 -14.07323 -13.76859 -13.63715 -13.38804 -12.92349 -12.85229 -12.71272 -12.70170 -12.50967 -12.39343 -11.79831 -11.61208 -11.30902 -11.09256 -10.97973 -10.78351 -10.63540 -10.54002 -10.46743 -10.41560 -9.71343 -9.35445 -8.86662 -8.48626 -8.20417 -7.22014 -6.47795 -4.06516 1.56024 1.97944 2.18519 2.25173 3.10525 3.12582 3.18000 3.22539 3.48544 3.94544 3.96006 4.04344 4.09108 4.12030 4.19444 4.52250 4.60509 4.73303 5.06668 5.12347 5.22373 5.28056 5.31326 5.32932 5.44762 5.47554 5.64668 5.70313 5.73467 5.78506 5.86116 6.04404 6.18172 6.39671 6.61628 6.66530 6.87296 6.96757 7.07568 7.16678 7.28219 7.33798 7.39119 7.42924 7.79675 7.97481 8.98119 9.67783 10.70222 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.030341 B = 0.001555 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.609141 B =18002.068040 C =18508.749340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.048 4.048 13 C -0.187 4.187 14 C 0.118 3.882 15 N -0.671 5.671 16 C 0.058 3.942 17 H 0.069 0.931 18 C -0.134 4.134 19 C 0.114 3.886 20 H 0.109 0.891 21 N -0.695 5.695 22 C 0.474 3.526 23 O -0.498 6.498 24 C 0.258 3.742 25 F -0.175 7.175 26 F -0.188 7.188 27 C -0.147 4.147 28 C -0.069 4.069 29 C -0.194 4.194 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.345 0.655 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.406 0.594 39 H 0.139 0.861 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.251 -23.465 2.732 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.255 4.255 12 C -0.067 4.067 13 C -0.189 4.189 14 C -0.010 4.010 15 N -0.303 5.303 16 C -0.053 4.053 17 H 0.087 0.913 18 C -0.173 4.173 19 C 0.009 3.991 20 H 0.127 0.873 21 N -0.347 5.347 22 C 0.255 3.745 23 O -0.371 6.371 24 C 0.201 3.799 25 F -0.156 7.156 26 F -0.169 7.169 27 C -0.186 4.186 28 C -0.088 4.088 29 C -0.213 4.213 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.164 0.836 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.242 0.758 39 H 0.156 0.844 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.908 -22.495 3.358 26.660 hybrid contribution -0.504 -0.122 -0.548 0.755 sum 13.404 -22.617 2.810 26.440 Atomic orbital electron populations 1.70045 1.05970 1.27591 1.46102 1.25296 0.95848 0.98862 0.96530 0.85644 0.79167 0.80340 0.78264 1.19069 1.20145 1.20118 1.21385 0.91853 0.80784 1.52742 0.88966 1.83974 1.34443 1.11511 1.78195 1.19404 0.90329 0.88035 0.92040 1.21178 0.93784 0.98988 1.11522 1.20570 0.98302 0.91572 0.96281 1.19093 0.93060 0.93989 1.12730 1.20668 0.98053 0.94151 0.88085 1.60696 1.24608 1.33970 1.11010 1.23103 0.95230 0.91055 0.95864 0.91283 1.23546 0.96465 0.98092 0.99232 1.21916 0.96762 0.82551 0.97891 0.87293 1.45607 1.21235 1.23727 1.44138 1.21063 0.82850 0.86794 0.83742 1.90841 1.49292 1.65643 1.31333 1.21657 0.74273 0.84164 0.99818 1.93076 1.47379 1.87849 1.87300 1.93067 1.58380 1.68598 1.96895 1.23619 0.94831 1.01182 0.98927 1.20465 0.92972 0.96550 0.98775 1.20167 0.99482 0.90360 1.11327 0.92055 0.85595 0.87522 0.91249 0.95444 0.83602 0.87806 0.91408 0.75821 0.84413 0.90795 0.87491 0.87540 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -10.84 9.49 30.89 0.29 -10.54 16 8 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 9 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.24 -5.02 9.17 -39.39 -0.36 -5.38 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 13 C -0.19 -2.97 5.40 -104.57 -0.56 -3.53 16 14 C 0.12 1.40 5.65 -4.97 -0.03 1.38 16 15 N -0.67 -6.98 6.55 -107.13 -0.70 -7.68 16 16 C 0.06 0.43 4.02 -66.90 -0.27 0.16 16 17 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 18 C -0.13 -1.04 7.68 -25.92 -0.20 -1.24 16 19 C 0.11 0.79 4.32 -67.12 -0.29 0.50 16 20 H 0.11 0.92 7.47 -51.93 -0.39 0.53 16 21 N -0.69 -3.87 5.26 -53.01 -0.28 -4.15 16 22 C 0.47 3.63 7.63 -10.98 -0.08 3.54 16 23 O -0.50 -6.03 16.22 5.56 0.09 -5.94 16 24 C 0.26 1.35 5.72 36.01 0.21 1.56 16 25 F -0.18 -1.48 16.95 2.25 0.04 -1.44 16 26 F -0.19 -1.13 17.32 2.25 0.04 -1.09 16 27 C -0.15 -0.90 7.40 -25.92 -0.19 -1.09 16 28 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 29 C -0.19 -3.96 9.99 -39.40 -0.39 -4.36 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 32 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.03 0.30 8.07 -51.93 -0.42 -0.12 16 35 H 0.34 3.56 8.54 -39.29 -0.34 3.23 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 1.20 8.70 -40.82 -0.36 0.85 16 39 H 0.14 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -33.26 377.36 -7.81 -41.07 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.41 Total: 4.94 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -3.01 Total: -17.38 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.22 Total: -36.14 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.53 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.26 -7.81 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019912862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.407 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds