Wall clock time and date at job start Sat Apr 11 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48501 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47078 * 299.99989 * 3 2 1 6 6 H 1.48510 * 109.47162 * 59.99713 * 3 2 1 7 7 C 1.38654 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00135 * 180.02562 * 7 2 1 9 9 O 1.34822 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.35759 * 117.00442 * 185.05722 * 9 7 2 11 11 C 1.38884 * 120.06274 * 354.46464 * 10 9 7 12 12 C 1.38096 * 119.92793 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.06989 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.92811 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47128 * 89.99934 * 14 13 12 16 16 C 1.46900 * 111.00114 * 179.97438 * 15 14 13 17 17 H 1.09002 * 112.90497 * 336.25200 * 16 15 14 18 18 C 1.53781 * 113.61585 * 107.49966 * 16 15 14 19 19 C 1.53784 * 87.07763 * 139.98282 * 18 16 15 20 20 H 1.09003 * 113.61458 * 220.01654 * 19 18 16 21 21 N 1.46497 * 113.61313 * 89.12022 * 19 18 16 22 22 C 1.34783 * 120.00105 * 107.50073 * 21 19 18 23 23 O 1.21277 * 120.00192 * 0.02562 * 22 21 19 24 24 C 1.50700 * 119.99730 * 179.97438 * 22 21 19 25 25 F 1.39899 * 109.46671 * 185.00079 * 24 22 21 26 26 F 1.39898 * 109.47153 * 304.99800 * 24 22 21 27 27 C 1.53782 * 87.08347 * 334.56601 * 19 18 16 28 28 C 1.38301 * 120.13945 * 0.27152 * 13 12 11 29 29 C 1.38098 * 120.06409 * 359.49541 * 28 13 12 30 30 H 0.97002 * 120.00144 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.03840 * 0.02562 * 11 10 9 32 32 H 1.08007 * 119.96514 * 179.97438 * 12 11 10 33 33 H 1.08997 * 109.47056 * 329.99803 * 14 13 12 34 34 H 1.09004 * 109.46851 * 209.99919 * 14 13 12 35 35 H 1.00898 * 111.00235 * 56.04191 * 15 14 13 36 36 H 1.09001 * 113.61292 * 25.43585 * 18 16 15 37 37 H 1.08994 * 113.69199 * 254.54385 * 18 16 15 38 38 H 0.96998 * 120.00290 * 287.49356 * 21 19 18 39 39 H 1.08993 * 109.47286 * 65.00065 * 24 22 21 40 40 H 1.08998 * 113.60832 * 139.97962 * 27 19 18 41 41 H 1.08995 * 113.61364 * 270.88440 * 27 19 18 42 42 H 1.07997 * 119.96340 * 179.72464 * 28 13 12 43 43 H 1.08007 * 120.03145 * 180.25260 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4571 -3.4395 0.0953 12 6 4.2022 -4.5970 0.2050 13 6 3.5684 -5.8201 0.3277 14 6 4.3847 -7.0813 0.4466 15 7 4.6570 -7.3565 1.8637 16 6 5.4521 -8.5820 2.0187 17 1 5.3501 -9.2635 1.1741 18 6 6.9115 -8.3219 2.4276 19 6 6.7855 -9.5403 3.3574 20 1 7.2722 -9.4046 4.3233 21 7 7.1385 -10.8083 2.7143 22 6 8.2910 -11.4290 3.0355 23 8 9.0355 -10.9381 3.8573 24 6 8.6537 -12.7337 2.3742 25 9 9.8264 -13.2368 2.9476 26 9 7.6147 -13.6529 2.5550 27 6 5.2730 -9.2637 3.3854 28 6 2.1871 -5.8887 0.3353 29 6 1.4365 -4.7343 0.2308 30 1 -0.4850 0.8401 -0.0004 31 1 3.9527 -2.4845 0.0007 32 1 5.2811 -4.5470 0.1950 33 1 5.3269 -6.9559 -0.0868 34 1 3.8307 -7.9147 0.0146 35 1 3.7995 -7.4129 2.3924 36 1 7.0552 -7.3806 2.9582 37 1 7.6256 -8.4637 1.6164 38 1 6.5428 -11.2012 2.0573 39 1 8.8120 -12.5692 1.3085 40 1 4.6634 -10.1664 3.3466 41 1 4.9688 -8.5800 4.1779 42 1 1.6952 -6.8458 0.4268 43 1 0.3578 -4.7882 0.2409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019912862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:52 Heat of formation + Delta-G solvation = -136.620304 kcal Electronic energy + Delta-G solvation = -27595.151059 eV Core-core repulsion = 23083.510794 eV Total energy + Delta-G solvation = -4511.640264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.18474 -48.22873 -41.34732 -40.75393 -39.57382 -38.43063 -35.79552 -34.37806 -33.83270 -31.76364 -30.73960 -29.08124 -27.53214 -26.69856 -25.77443 -23.95823 -23.58293 -22.47937 -21.93884 -20.41113 -19.81972 -19.58873 -18.81349 -18.75736 -18.38539 -17.34250 -16.88131 -16.47807 -16.30407 -16.21022 -15.97705 -15.81474 -15.56986 -15.46904 -15.18778 -15.01747 -14.80464 -14.55935 -14.41648 -14.32893 -14.15928 -13.61547 -13.49425 -13.31599 -13.18898 -13.08955 -12.95015 -12.79452 -12.37708 -12.32184 -12.11492 -12.00799 -11.51916 -11.33281 -11.15183 -11.13330 -10.79307 -10.28747 -9.74692 -9.27360 -8.87165 -8.47075 -6.14847 0.63355 0.70904 0.99267 1.35041 1.43017 1.49195 1.53090 2.17704 2.80604 2.88275 3.06825 3.12891 3.51330 3.54032 3.55148 3.56164 3.59640 3.76312 3.93428 4.08950 4.12465 4.19471 4.25165 4.52544 4.53869 4.63792 4.75213 4.79335 4.86890 4.88744 4.95575 5.07956 5.12535 5.14828 5.18619 5.33451 5.44383 5.60153 5.74666 5.85435 6.04237 6.14114 6.21200 6.31049 6.55034 6.81259 6.98167 7.79652 8.76376 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.030341 B = 0.001555 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.609141 B =18002.068040 C =18508.749340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.112 3.888 11 C -0.246 4.246 12 C -0.052 4.052 13 C -0.157 4.157 14 C 0.123 3.877 15 N -0.684 5.684 16 C 0.064 3.936 17 H 0.092 0.908 18 C -0.135 4.135 19 C 0.115 3.885 20 H 0.088 0.912 21 N -0.678 5.678 22 C 0.471 3.529 23 O -0.552 6.552 24 C 0.262 3.738 25 F -0.196 7.196 26 F -0.191 7.191 27 C -0.135 4.135 28 C -0.058 4.058 29 C -0.206 4.206 30 H 0.272 0.728 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.347 0.653 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.423 0.577 39 H 0.193 0.807 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.150 0.850 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.911 -26.393 2.092 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.265 4.265 12 C -0.070 4.070 13 C -0.158 4.158 14 C -0.005 4.005 15 N -0.316 5.316 16 C -0.046 4.046 17 H 0.110 0.890 18 C -0.175 4.175 19 C 0.009 3.991 20 H 0.107 0.893 21 N -0.330 5.330 22 C 0.254 3.746 23 O -0.429 6.429 24 C 0.206 3.794 25 F -0.177 7.177 26 F -0.172 7.172 27 C -0.173 4.173 28 C -0.077 4.077 29 C -0.225 4.225 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.166 0.834 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.262 0.738 39 H 0.209 0.791 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.168 0.832 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.570 -25.500 2.697 29.999 hybrid contribution -0.898 0.403 -0.304 1.030 sum 14.673 -25.097 2.393 29.170 Atomic orbital electron populations 1.70184 1.07967 1.28674 1.49075 1.26565 0.96858 1.02684 0.95965 0.84540 0.78209 0.74947 0.78580 1.17593 1.19271 1.19375 1.21836 0.92447 0.81506 1.53019 0.88260 1.83934 1.36011 1.12637 1.81550 1.19979 0.91595 0.88031 0.94247 1.21257 0.93155 1.00049 1.12085 1.20910 0.99546 0.91086 0.95491 1.19668 0.93237 0.95183 1.07673 1.20660 0.98028 0.92406 0.89404 1.60575 1.25002 1.36132 1.09916 1.23153 0.93968 0.90268 0.97191 0.89023 1.23504 0.97083 0.97663 0.99243 1.21782 0.97378 0.82914 0.97042 0.89342 1.45485 1.20781 1.22975 1.43795 1.21577 0.82557 0.87511 0.82979 1.90824 1.51020 1.67300 1.33770 1.22022 0.73194 0.82400 1.01808 1.93033 1.48707 1.88030 1.87931 1.93063 1.58508 1.68578 1.97056 1.23532 0.94114 1.01628 0.98046 1.20913 0.93345 0.96820 0.96583 1.20464 0.99921 0.90646 1.11477 0.91877 0.86876 0.84904 0.90331 0.92871 0.83370 0.89462 0.91285 0.73829 0.79061 0.88957 0.87981 0.83223 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.59 13.67 21.61 0.30 -56.29 16 2 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 3 Si 1.02 43.07 29.55 68.60 2.03 45.09 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.41 -24.12 9.49 67.92 0.64 -23.47 16 8 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 9 O -0.23 -14.15 9.76 -22.75 -0.22 -14.37 16 10 C 0.11 5.51 6.65 22.58 0.15 5.66 16 11 C -0.25 -10.66 9.17 22.39 0.21 -10.45 16 12 C -0.05 -1.73 9.69 22.25 0.22 -1.52 16 13 C -0.16 -4.37 5.40 -19.83 -0.11 -4.48 16 14 C 0.12 2.26 5.65 85.56 0.48 2.74 16 15 N -0.68 -11.19 6.55 -492.85 -3.23 -14.42 16 16 C 0.06 0.67 4.02 45.44 0.18 0.85 16 17 H 0.09 0.63 7.87 -2.39 -0.02 0.62 16 18 C -0.14 -1.75 7.68 31.12 0.24 -1.51 16 19 C 0.11 1.32 4.32 45.52 0.20 1.52 16 20 H 0.09 1.45 7.47 -2.39 -0.02 1.43 16 21 N -0.68 -5.51 5.26 -440.03 -2.32 -7.83 16 22 C 0.47 6.30 7.63 87.66 0.67 6.97 16 23 O -0.55 -13.22 16.22 -3.02 -0.05 -13.27 16 24 C 0.26 2.02 5.72 71.24 0.41 2.42 16 25 F -0.20 -3.03 16.95 44.97 0.76 -2.27 16 26 F -0.19 -1.73 17.32 44.97 0.78 -0.95 16 27 C -0.13 -1.18 7.40 31.12 0.23 -0.95 16 28 C -0.06 -1.76 9.69 22.25 0.22 -1.54 16 29 C -0.21 -8.43 9.99 22.39 0.22 -8.21 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.11 5.08 5.64 -2.91 -0.02 5.06 16 32 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 34 H 0.05 0.77 8.07 -2.39 -0.02 0.75 16 35 H 0.35 5.62 8.54 -89.70 -0.77 4.85 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.42 0.64 8.70 -92.71 -0.81 -0.17 16 39 H 0.19 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -80.13 377.36 1.98 -78.15 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.50 Total: 18.97 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.42 Total: -32.82 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -5.25 Total: -78.54 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.27 Total: -27.64 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 1.54 Total: -3.22 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -80.13 1.98 -78.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019912862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.470 kcal (2) G-P(sol) polarization free energy of solvation -80.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds