Wall clock time and date at job start Sat Apr 11 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86807 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47018 * 270.00289 * 3 2 1 5 5 H 1.48495 * 109.46753 * 30.00364 * 3 2 1 6 6 H 1.48496 * 109.46981 * 150.00048 * 3 2 1 7 7 C 1.38654 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99765 * 0.02562 * 7 2 1 9 9 O 1.34833 * 120.00032 * 179.97438 * 7 2 1 10 10 C 1.35749 * 116.99854 * 185.05636 * 9 7 2 11 11 C 1.38883 * 120.06840 * 354.46698 * 10 9 7 12 12 C 1.38098 * 119.93023 * 179.97438 * 11 10 9 13 13 C 1.38306 * 120.06606 * 359.97188 * 12 11 10 14 14 C 1.50708 * 119.92755 * 180.02562 * 13 12 11 15 15 N 1.46891 * 109.47165 * 89.99942 * 14 13 12 16 16 C 1.46897 * 111.00284 * 179.97438 * 15 14 13 17 17 H 1.09000 * 112.84761 * 336.19591 * 16 15 14 18 18 C 1.53780 * 113.61689 * 107.50143 * 16 15 14 19 19 C 1.54053 * 87.07993 * 139.98298 * 18 16 15 20 20 H 1.08996 * 113.61325 * 89.07376 * 19 18 16 21 21 N 1.46497 * 113.69382 * 220.05741 * 19 18 16 22 22 C 1.34774 * 119.99744 * 252.41445 * 21 19 18 23 23 O 1.21280 * 120.00174 * 0.02562 * 22 21 19 24 24 C 1.50702 * 120.00380 * 180.02562 * 22 21 19 25 25 F 1.39893 * 109.47591 * 185.00362 * 24 22 21 26 26 F 1.39899 * 109.46985 * 305.00493 * 24 22 21 27 27 C 1.53781 * 113.61806 * 205.00104 * 16 15 14 28 28 C 1.38294 * 120.14148 * 0.28088 * 13 12 11 29 29 C 1.38100 * 120.06607 * 359.48940 * 28 13 12 30 30 H 0.97008 * 119.99739 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.03727 * 359.97438 * 11 10 9 32 32 H 1.08002 * 119.96590 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.46999 * 330.00127 * 14 13 12 34 34 H 1.08992 * 109.46742 * 210.00324 * 14 13 12 35 35 H 1.00904 * 111.00141 * 303.95242 * 15 14 13 36 36 H 1.08999 * 113.61549 * 254.53621 * 18 16 15 37 37 H 1.09004 * 113.61447 * 25.43399 * 18 16 15 38 38 H 0.96997 * 120.00316 * 72.42148 * 21 19 18 39 39 H 1.09003 * 109.46860 * 64.99688 * 24 22 21 40 40 H 1.08994 * 113.61620 * 334.56788 * 27 16 15 41 41 H 1.09002 * 113.61237 * 105.38487 * 27 16 15 42 42 H 1.07995 * 119.96785 * 179.72349 * 28 13 12 43 43 H 1.08002 * 120.03546 * 180.25595 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1360 -0.0014 9 8 3.3572 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2233 -3.5744 -0.0952 12 6 3.8531 -4.7985 -0.2049 13 6 5.2292 -4.8612 -0.3281 14 6 5.9132 -6.1988 -0.4482 15 7 6.0148 -6.5713 -1.8655 16 6 6.6784 -7.8725 -2.0216 17 1 7.3203 -8.1242 -1.1774 18 6 5.7232 -9.0060 -2.4310 19 6 6.8429 -9.5064 -3.3632 20 1 7.5292 -10.2054 -2.8851 21 7 6.3595 -9.9803 -4.6624 22 6 6.3559 -11.2992 -4.9398 23 8 6.7525 -12.0937 -4.1137 24 6 5.8592 -11.7868 -6.2764 25 9 5.8451 -13.1856 -6.2868 26 9 4.5640 -11.3057 -6.4963 27 6 7.3578 -8.0575 -3.3887 28 6 5.9793 -3.6994 -0.3361 29 6 5.3550 -2.4720 -0.2316 30 1 -0.4850 0.8401 0.0004 31 1 2.1486 -3.5261 0.0005 32 1 3.2704 -5.7078 -0.1945 33 1 5.3335 -6.9524 0.0849 34 1 6.9120 -6.1360 -0.0165 35 1 5.1065 -6.5733 -2.3049 36 1 5.4901 -9.6951 -1.6193 37 1 4.8360 -8.6593 -2.9611 38 1 6.0421 -9.3449 -5.3229 39 1 6.5200 -11.4242 -7.0638 40 1 6.9177 -7.4516 -4.1806 41 1 8.4444 -7.9796 -3.3503 42 1 7.0541 -3.7519 -0.4280 43 1 5.9410 -1.5649 -0.2420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021758874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:01 Heat of formation + Delta-G solvation = -113.139102 kcal Electronic energy + Delta-G solvation = -27608.197068 eV Core-core repulsion = 23097.575025 eV Total energy + Delta-G solvation = -4510.622043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.68179 -47.70895 -40.64757 -39.32580 -38.87682 -37.02223 -34.99469 -33.31178 -32.37165 -30.29595 -29.64257 -28.55763 -26.09768 -25.80428 -24.45386 -23.19690 -22.09050 -21.43667 -20.72352 -20.20118 -18.83910 -18.31745 -17.97934 -17.92014 -17.33057 -16.80685 -16.08493 -15.73320 -15.32721 -15.01562 -14.84454 -14.49884 -14.49300 -14.22555 -14.03633 -13.96159 -13.78627 -13.69589 -13.61250 -13.02561 -12.89897 -12.70174 -12.68340 -12.61174 -12.21775 -12.01161 -11.68731 -11.58247 -11.25472 -11.18571 -10.79348 -10.71751 -10.66382 -10.41926 -10.18334 -9.69338 -9.42399 -8.90585 -8.46496 -8.28789 -7.36508 -6.45125 -4.11912 1.57299 2.03075 2.09636 2.14715 3.19569 3.23322 3.26073 3.37796 3.51721 3.95746 3.98737 4.09829 4.20169 4.20684 4.23354 4.45156 4.49903 4.66413 4.83318 5.06384 5.08421 5.21915 5.30953 5.34095 5.36117 5.49367 5.56026 5.60024 5.64798 5.71989 5.78420 5.97645 6.08991 6.30432 6.53787 6.64968 6.74920 6.90239 7.04209 7.19568 7.23738 7.29442 7.34015 7.57857 7.76231 8.00188 8.90072 9.52289 10.62383 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.001671 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.877826 B =16748.941596 C =17583.217429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.222 4.222 12 C -0.067 4.067 13 C -0.179 4.179 14 C 0.116 3.884 15 N -0.671 5.671 16 C 0.071 3.929 17 H 0.101 0.899 18 C -0.180 4.180 19 C 0.118 3.882 20 H 0.119 0.881 21 N -0.700 5.700 22 C 0.472 3.528 23 O -0.503 6.503 24 C 0.257 3.743 25 F -0.176 7.176 26 F -0.187 7.187 27 C -0.132 4.132 28 C -0.054 4.054 29 C -0.194 4.194 30 H 0.280 0.720 31 H 0.132 0.868 32 H 0.105 0.895 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.345 0.655 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.408 0.592 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.820 -19.697 -10.886 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.109 3.891 11 C -0.241 4.241 12 C -0.086 4.086 13 C -0.180 4.180 14 C -0.012 4.012 15 N -0.301 5.301 16 C -0.040 4.040 17 H 0.119 0.881 18 C -0.221 4.221 19 C 0.013 3.987 20 H 0.137 0.863 21 N -0.351 5.351 22 C 0.254 3.746 23 O -0.376 6.376 24 C 0.200 3.800 25 F -0.157 7.157 26 F -0.168 7.168 27 C -0.171 4.171 28 C -0.073 4.073 29 C -0.214 4.214 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.123 0.877 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.244 0.756 39 H 0.155 0.845 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.527 -19.554 -10.343 27.026 hybrid contribution -1.011 0.287 -0.121 1.058 sum 14.516 -19.267 -10.464 26.295 Atomic orbital electron populations 1.69648 1.05574 1.28526 1.47905 1.24478 0.95039 0.98870 0.95643 0.86173 0.80318 0.81388 0.78978 1.19860 1.20775 1.18364 1.20763 0.76876 0.96621 1.52293 0.87642 1.83575 1.22633 1.25811 1.80169 1.19151 0.91748 0.85472 0.92704 1.21241 1.01078 0.91855 1.09928 1.20649 0.93523 0.96624 0.97801 1.19177 0.93332 0.93919 1.11570 1.20687 0.99426 0.93368 0.87724 1.60495 1.27067 1.27262 1.15289 1.22780 0.96292 0.87650 0.97308 0.88144 1.24290 0.98404 0.99590 0.99812 1.22636 0.97323 0.95892 0.82820 0.86337 1.45919 1.64171 1.06524 1.18531 1.21128 0.80377 0.84013 0.89120 1.90828 1.45447 1.54274 1.47089 1.21672 0.82891 0.77303 0.98162 1.93071 1.96569 1.28747 1.97320 1.93078 1.40386 1.87607 1.95759 1.23486 1.01455 0.93355 0.98842 1.20465 0.98443 0.91094 0.97260 1.20228 0.91932 0.97956 1.11256 0.91024 0.85029 0.87660 0.95111 0.90965 0.83509 0.90826 0.89175 0.75589 0.84479 0.88822 0.90340 0.86861 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 13.96 55.48 0.77 -24.32 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 21.41 28.62 -169.99 -4.86 16.54 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.26 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.39 -10.83 9.95 30.89 0.31 -10.53 16 8 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 9 O -0.22 -5.64 8.59 0.04 0.00 -5.64 16 10 C 0.16 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.22 -4.62 9.17 -39.39 -0.36 -4.98 16 12 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 13 C -0.18 -2.72 5.40 -104.57 -0.56 -3.29 16 14 C 0.12 1.34 5.65 -4.98 -0.03 1.31 16 15 N -0.67 -6.75 6.61 -107.14 -0.71 -7.46 16 16 C 0.07 0.54 4.18 -66.90 -0.28 0.26 16 17 H 0.10 0.73 7.87 -51.93 -0.41 0.32 16 18 C -0.18 -1.30 7.51 -25.78 -0.19 -1.49 16 19 C 0.12 0.76 4.25 -66.97 -0.28 0.48 16 20 H 0.12 0.89 7.47 -51.93 -0.39 0.51 16 21 N -0.70 -3.93 5.36 -52.88 -0.28 -4.21 16 22 C 0.47 3.66 7.63 -10.99 -0.08 3.58 16 23 O -0.50 -6.06 16.22 5.56 0.09 -5.97 16 24 C 0.26 1.42 5.72 36.01 0.21 1.63 16 25 F -0.18 -1.53 16.95 2.25 0.04 -1.50 16 26 F -0.19 -1.26 17.32 2.25 0.04 -1.22 16 27 C -0.13 -0.80 7.62 -25.92 -0.20 -1.00 16 28 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 29 C -0.19 -3.73 9.99 -39.40 -0.39 -4.13 16 30 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.35 3.55 8.19 -39.29 -0.32 3.23 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.66 7.83 -51.93 -0.41 0.25 16 38 H 0.41 1.28 8.73 -40.82 -0.36 0.93 16 39 H 0.14 0.13 8.14 -51.93 -0.42 -0.30 16 40 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -32.30 375.87 -7.64 -39.94 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.39 Total: 4.08 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -3.00 Total: -15.91 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.22 Total: -35.99 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.86 Total: 16.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.30 -7.64 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021758874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.203 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds