Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86807 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47018 * 270.00289 * 3 2 1 5 5 H 1.48495 * 109.46753 * 30.00364 * 3 2 1 6 6 H 1.48496 * 109.46981 * 150.00048 * 3 2 1 7 7 C 1.38654 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99765 * 0.02562 * 7 2 1 9 9 O 1.34833 * 120.00032 * 179.97438 * 7 2 1 10 10 C 1.35749 * 116.99854 * 185.05636 * 9 7 2 11 11 C 1.38883 * 120.06840 * 354.46698 * 10 9 7 12 12 C 1.38098 * 119.93023 * 179.97438 * 11 10 9 13 13 C 1.38306 * 120.06606 * 359.97188 * 12 11 10 14 14 C 1.50708 * 119.92755 * 180.02562 * 13 12 11 15 15 N 1.46891 * 109.47165 * 89.99942 * 14 13 12 16 16 C 1.46897 * 111.00284 * 179.97438 * 15 14 13 17 17 H 1.09000 * 112.84761 * 336.19591 * 16 15 14 18 18 C 1.53780 * 113.61689 * 107.50143 * 16 15 14 19 19 C 1.54053 * 87.07993 * 139.98298 * 18 16 15 20 20 H 1.08996 * 113.61325 * 89.07376 * 19 18 16 21 21 N 1.46497 * 113.69382 * 220.05741 * 19 18 16 22 22 C 1.34774 * 119.99744 * 252.41445 * 21 19 18 23 23 O 1.21280 * 120.00174 * 0.02562 * 22 21 19 24 24 C 1.50702 * 120.00380 * 180.02562 * 22 21 19 25 25 F 1.39893 * 109.47591 * 185.00362 * 24 22 21 26 26 F 1.39899 * 109.46985 * 305.00493 * 24 22 21 27 27 C 1.53781 * 113.61806 * 205.00104 * 16 15 14 28 28 C 1.38294 * 120.14148 * 0.28088 * 13 12 11 29 29 C 1.38100 * 120.06607 * 359.48940 * 28 13 12 30 30 H 0.97008 * 119.99739 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.03727 * 359.97438 * 11 10 9 32 32 H 1.08002 * 119.96590 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.46999 * 330.00127 * 14 13 12 34 34 H 1.08992 * 109.46742 * 210.00324 * 14 13 12 35 35 H 1.00904 * 111.00141 * 303.95242 * 15 14 13 36 36 H 1.08999 * 113.61549 * 254.53621 * 18 16 15 37 37 H 1.09004 * 113.61447 * 25.43399 * 18 16 15 38 38 H 0.96997 * 120.00316 * 72.42148 * 21 19 18 39 39 H 1.09003 * 109.46860 * 64.99688 * 24 22 21 40 40 H 1.08994 * 113.61620 * 334.56788 * 27 16 15 41 41 H 1.09002 * 113.61237 * 105.38487 * 27 16 15 42 42 H 1.07995 * 119.96785 * 179.72349 * 28 13 12 43 43 H 1.08002 * 120.03546 * 180.25595 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1360 -0.0014 9 8 3.3572 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2233 -3.5744 -0.0952 12 6 3.8531 -4.7985 -0.2049 13 6 5.2292 -4.8612 -0.3281 14 6 5.9132 -6.1988 -0.4482 15 7 6.0148 -6.5713 -1.8655 16 6 6.6784 -7.8725 -2.0216 17 1 7.3203 -8.1242 -1.1774 18 6 5.7232 -9.0060 -2.4310 19 6 6.8429 -9.5064 -3.3632 20 1 7.5292 -10.2054 -2.8851 21 7 6.3595 -9.9803 -4.6624 22 6 6.3559 -11.2992 -4.9398 23 8 6.7525 -12.0937 -4.1137 24 6 5.8592 -11.7868 -6.2764 25 9 5.8451 -13.1856 -6.2868 26 9 4.5640 -11.3057 -6.4963 27 6 7.3578 -8.0575 -3.3887 28 6 5.9793 -3.6994 -0.3361 29 6 5.3550 -2.4720 -0.2316 30 1 -0.4850 0.8401 0.0004 31 1 2.1486 -3.5261 0.0005 32 1 3.2704 -5.7078 -0.1945 33 1 5.3335 -6.9524 0.0849 34 1 6.9120 -6.1360 -0.0165 35 1 5.1065 -6.5733 -2.3049 36 1 5.4901 -9.6951 -1.6193 37 1 4.8360 -8.6593 -2.9611 38 1 6.0421 -9.3449 -5.3229 39 1 6.5200 -11.4242 -7.0638 40 1 6.9177 -7.4516 -4.1806 41 1 8.4444 -7.9796 -3.3503 42 1 7.0541 -3.7519 -0.4280 43 1 5.9410 -1.5649 -0.2420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021758874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = -136.017222 kcal Electronic energy + Delta-G solvation = -27609.189137 eV Core-core repulsion = 23097.575025 eV Total energy + Delta-G solvation = -4511.614113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -50.19090 -48.23785 -41.26134 -40.86692 -39.64618 -38.52489 -35.83833 -34.51491 -33.99304 -31.79459 -30.86448 -29.16741 -27.51449 -26.63400 -25.67715 -23.97895 -23.61181 -22.05867 -21.89825 -21.00443 -19.80308 -19.36788 -19.08075 -18.78015 -18.51892 -17.40511 -16.95681 -16.59145 -16.37497 -16.20546 -15.92603 -15.70181 -15.64210 -15.27832 -15.11400 -15.03268 -14.84780 -14.56854 -14.40558 -14.30207 -14.11637 -13.99647 -13.73614 -13.42590 -13.21258 -13.07209 -13.04655 -12.61244 -12.46088 -12.25047 -12.15619 -11.96774 -11.79723 -11.66804 -11.26023 -11.04895 -10.89340 -10.25754 -9.77870 -9.26708 -8.94882 -8.49752 -6.22239 0.59728 0.64615 0.98849 1.31814 1.35801 1.52284 1.54904 2.28310 2.74191 2.89701 3.02564 3.08404 3.17166 3.40875 3.55018 3.60990 3.69599 3.76870 3.88627 3.97654 4.06939 4.11497 4.24044 4.47561 4.56411 4.61682 4.73258 4.78918 4.82592 4.84412 4.96423 5.00303 5.03870 5.11913 5.29058 5.38977 5.43193 5.60140 5.78256 5.83250 5.92597 6.13537 6.19263 6.29040 6.48469 6.80364 6.84767 7.59923 8.61781 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.001671 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.877826 B =16748.941596 C =17583.217429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.398 4.398 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.118 3.882 11 C -0.239 4.239 12 C -0.068 4.068 13 C -0.149 4.149 14 C 0.119 3.881 15 N -0.675 5.675 16 C 0.071 3.929 17 H 0.108 0.892 18 C -0.179 4.179 19 C 0.119 3.881 20 H 0.108 0.892 21 N -0.685 5.685 22 C 0.469 3.531 23 O -0.554 6.554 24 C 0.259 3.741 25 F -0.196 7.196 26 F -0.193 7.193 27 C -0.119 4.119 28 C -0.048 4.048 29 C -0.194 4.194 30 H 0.284 0.716 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.344 0.656 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.423 0.577 39 H 0.193 0.807 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.152 0.848 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.935 -20.594 -12.084 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.069 3.931 11 C -0.258 4.258 12 C -0.086 4.086 13 C -0.150 4.150 14 C -0.009 4.009 15 N -0.305 5.305 16 C -0.040 4.040 17 H 0.126 0.874 18 C -0.219 4.219 19 C 0.014 3.986 20 H 0.126 0.874 21 N -0.337 5.337 22 C 0.252 3.748 23 O -0.431 6.431 24 C 0.202 3.798 25 F -0.178 7.178 26 F -0.175 7.175 27 C -0.157 4.157 28 C -0.066 4.066 29 C -0.213 4.213 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.261 0.739 39 H 0.210 0.790 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.170 0.830 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.662 -20.464 -11.570 30.015 hybrid contribution -1.786 0.227 0.226 1.815 sum 16.876 -20.237 -11.343 28.688 Atomic orbital electron populations 1.69734 1.06896 1.29560 1.50266 1.25295 0.95902 1.02199 0.95602 0.85203 0.78758 0.77381 0.79286 1.19028 1.19284 1.18736 1.20693 0.78154 0.96050 1.52550 0.90222 1.83516 1.21177 1.27595 1.83157 1.19711 0.93293 0.85038 0.95008 1.21249 1.00041 0.93338 1.11173 1.20927 0.94801 0.95926 0.96969 1.19690 0.92531 0.95894 1.06850 1.20700 1.00071 0.91036 0.89123 1.60472 1.27150 1.28930 1.13953 1.22850 0.96287 0.86322 0.98496 0.87365 1.24260 0.98570 0.99381 0.99737 1.22536 0.96939 0.96107 0.83036 0.87385 1.45847 1.63047 1.06275 1.18529 1.21574 0.79620 0.84104 0.89501 1.90807 1.47931 1.55554 1.48810 1.22084 0.83246 0.76103 0.98329 1.93027 1.96660 1.30705 1.97363 1.93065 1.41161 1.87552 1.95695 1.23393 1.01906 0.92493 0.97945 1.20927 1.00391 0.89899 0.95413 1.20550 0.90484 0.99943 1.10327 0.90612 0.87734 0.85114 0.94105 0.89102 0.83670 0.91757 0.89156 0.73888 0.79009 0.88235 0.89424 0.83001 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.12 13.96 21.61 0.30 -54.82 16 2 C 0.01 0.48 5.49 84.83 0.47 0.94 16 3 Si 0.97 45.30 28.62 68.60 1.96 47.27 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.40 -23.43 9.95 67.92 0.68 -22.75 16 8 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 9 O -0.25 -13.36 8.59 -22.76 -0.20 -13.56 16 10 C 0.12 5.46 6.65 22.58 0.15 5.61 16 11 C -0.24 -10.25 9.17 22.39 0.21 -10.04 16 12 C -0.07 -2.19 9.69 22.25 0.22 -1.98 16 13 C -0.15 -4.02 5.40 -19.83 -0.11 -4.12 16 14 C 0.12 2.21 5.65 85.56 0.48 2.69 16 15 N -0.67 -10.84 6.61 -492.88 -3.26 -14.09 16 16 C 0.07 0.82 4.18 45.44 0.19 1.01 16 17 H 0.11 1.14 7.87 -2.39 -0.02 1.12 16 18 C -0.18 -2.15 7.51 31.21 0.23 -1.91 16 19 C 0.12 1.26 4.25 45.61 0.19 1.46 16 20 H 0.11 1.46 7.47 -2.39 -0.02 1.44 16 21 N -0.69 -6.07 5.36 -439.60 -2.36 -8.43 16 22 C 0.47 6.55 7.63 87.66 0.67 7.22 16 23 O -0.55 -13.14 16.22 -3.03 -0.05 -13.19 16 24 C 0.26 2.30 5.72 71.24 0.41 2.71 16 25 F -0.20 -3.22 16.95 44.97 0.76 -2.46 16 26 F -0.19 -2.22 17.32 44.97 0.78 -1.44 16 27 C -0.12 -1.01 7.62 31.12 0.24 -0.77 16 28 C -0.05 -1.38 9.69 22.25 0.22 -1.16 16 29 C -0.19 -7.17 9.99 22.39 0.22 -6.95 16 30 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 31 H 0.10 5.00 5.64 -2.91 -0.02 4.99 16 32 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.04 0.72 8.08 -2.39 -0.02 0.70 16 34 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 35 H 0.34 5.85 8.19 -89.69 -0.73 5.11 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.10 7.83 -2.38 -0.02 1.08 16 38 H 0.42 1.35 8.73 -92.71 -0.81 0.54 16 39 H 0.19 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.10 0.79 8.12 -2.39 -0.02 0.77 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 42 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -75.34 375.87 1.94 -73.40 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.47 Total: 15.38 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 4.46 Total: -28.06 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -5.31 Total: -77.34 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.24 Total: -26.75 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 1.54 Total: -3.90 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.96 Total: 47.27 kcal Total: -75.34 1.94 -73.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021758874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.618 kcal (2) G-P(sol) polarization free energy of solvation -75.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds