Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99989 * 2 1 4 4 H 1.48503 * 109.47020 * 269.99481 * 3 2 1 5 5 H 1.48497 * 109.47482 * 29.99821 * 3 2 1 6 6 H 1.48503 * 109.47075 * 149.99586 * 3 2 1 7 7 C 1.38813 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00137 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.03751 * 33.84423 * 10 9 7 12 12 C 1.53702 * 109.90244 * 272.68099 * 10 9 7 13 13 C 1.54063 * 106.68299 * 241.81976 * 12 10 9 14 14 C 1.54488 * 104.83914 * 336.66869 * 13 12 10 15 15 H 1.09004 * 114.04878 * 272.29276 * 14 13 12 16 16 C 1.54116 * 108.73097 * 144.68419 * 14 13 12 17 17 N 1.47066 * 107.52749 * 272.43928 * 16 14 13 18 18 C 1.34773 * 125.70570 * 181.97031 * 17 16 14 19 19 O 1.21617 * 120.00161 * 180.02562 * 18 17 16 20 20 C 1.47382 * 120.00540 * 0.02622 * 18 17 16 21 21 C 1.36414 * 127.18449 * 359.96975 * 20 18 17 22 22 O 1.33654 * 108.39314 * 180.02562 * 21 20 18 23 23 C 1.34214 * 110.90894 * 0.02562 * 22 21 20 24 24 C 1.50706 * 125.43537 * 179.97438 * 23 22 21 25 25 F 1.39894 * 109.47035 * 30.02927 * 24 23 22 26 26 F 1.39897 * 109.46606 * 150.02741 * 24 23 22 27 27 C 1.34171 * 109.12464 * 0.22801 * 23 22 21 28 28 C 1.47393 * 108.58404 * 2.23615 * 17 16 14 29 29 C 1.53795 * 109.90399 * 155.00474 * 10 9 7 30 30 H 1.09001 * 113.27691 * 264.65187 * 29 10 9 31 31 H 0.96994 * 119.99670 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00148 * 0.02562 * 9 7 2 33 33 H 1.09001 * 110.02142 * 1.12625 * 12 10 9 34 34 H 1.08999 * 110.01498 * 122.46799 * 12 10 9 35 35 H 1.09004 * 110.36658 * 217.82448 * 13 12 10 36 36 H 1.09004 * 110.36705 * 95.51221 * 13 12 10 37 37 H 1.08996 * 109.83701 * 152.94200 * 16 14 13 38 38 H 1.09006 * 109.92236 * 31.98341 * 16 14 13 39 39 H 1.08002 * 125.80762 * 0.02562 * 21 20 18 40 40 H 1.08997 * 109.46819 * 270.02201 * 24 23 22 41 41 H 1.08002 * 127.02521 * 179.73072 * 27 23 22 42 42 H 1.08990 * 110.32809 * 93.72145 * 28 17 16 43 43 H 1.09004 * 110.32445 * 215.94811 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9813 -3.5550 0.5708 12 6 2.3782 -4.0761 -1.4431 13 6 1.6631 -5.4196 -1.6824 14 6 1.4700 -6.0216 -0.2728 15 1 2.3132 -6.6186 0.0746 16 6 0.1283 -6.7791 -0.2377 17 7 -0.9174 -5.8113 0.1263 18 6 -2.2242 -6.0927 0.2980 19 8 -3.0023 -5.2079 0.5997 20 6 -2.7106 -7.4725 0.1203 21 6 -1.9730 -8.5699 -0.2152 22 8 -2.7906 -9.6255 -0.2748 23 6 -4.0532 -9.2701 0.0097 24 6 -5.2380 -10.2010 0.0364 25 9 -4.8152 -11.4836 0.4013 26 9 -6.1749 -9.7367 0.9658 27 6 -4.0930 -7.9528 0.2612 28 6 -0.2983 -4.4810 0.2657 29 6 1.1848 -4.7656 0.6116 30 1 1.3739 -4.9271 1.6728 31 1 -0.4849 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 2.0061 -3.3259 -2.1409 34 1 3.4543 -4.1984 -1.5661 35 1 2.2829 -6.0757 -2.2935 36 1 0.6973 -5.2553 -2.1603 37 1 0.1719 -7.5742 0.5066 38 1 -0.0849 -7.2026 -1.2192 39 1 -0.9092 -8.5835 -0.4011 40 1 -5.6945 -10.2365 -0.9528 41 1 -4.9626 -7.3654 0.5165 42 1 -0.3719 -3.9291 -0.6713 43 1 -0.7749 -3.9242 1.0726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026341056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = -86.772418 kcal Electronic energy + Delta-G solvation = -29576.273938 eV Core-core repulsion = 25066.795241 eV Total energy + Delta-G solvation = -4509.478698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.54366 -47.56953 -43.01577 -40.48831 -38.36566 -35.26402 -33.45989 -33.23759 -31.74105 -31.03200 -29.18811 -28.58790 -26.52833 -25.50200 -24.65529 -23.32868 -22.35280 -21.42068 -20.11907 -19.72112 -18.95838 -18.24237 -18.10990 -17.58776 -17.29265 -16.87538 -16.46259 -16.12867 -15.66726 -15.23165 -15.03815 -14.69706 -14.41293 -14.11959 -13.92854 -13.71410 -13.58583 -13.28079 -13.19555 -13.11261 -12.92643 -12.56393 -12.43740 -12.28528 -11.94621 -11.62822 -11.34175 -10.84688 -10.71649 -10.66928 -10.56950 -10.33957 -10.20660 -10.18156 -10.00250 -9.80645 -9.63353 -9.28851 -8.92735 -8.56769 -6.98909 -5.77481 -3.07761 0.93143 1.47067 1.99609 2.84561 3.25816 3.34713 3.42692 3.47771 3.50020 3.61924 4.16981 4.20970 4.28933 4.37294 4.50692 4.55117 4.65470 4.75866 4.94924 5.13666 5.17142 5.26842 5.37222 5.39506 5.44756 5.57718 5.69024 5.77284 5.79112 5.88614 5.91467 5.97928 6.18039 6.29499 6.40655 6.43697 6.44486 6.46772 6.60543 6.74634 7.05036 7.53601 7.69474 8.19446 8.40494 9.51345 10.07663 10.40786 11.44635 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002411 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.730462 B =11609.918071 C =12636.133438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.182 3.818 11 H 0.055 0.945 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.102 4.102 15 H 0.104 0.896 16 C 0.092 3.908 17 N -0.610 5.610 18 C 0.595 3.405 19 O -0.527 6.527 20 C -0.224 4.224 21 C 0.028 3.972 22 O -0.156 6.156 23 C -0.110 4.110 24 C 0.366 3.634 25 F -0.191 7.191 26 F -0.183 7.183 27 C -0.104 4.104 28 C 0.118 3.882 29 C -0.105 4.105 30 H 0.091 0.909 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.229 0.771 40 H 0.140 0.860 41 H 0.170 0.830 42 H 0.086 0.914 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -24.325 -2.766 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.368 5.368 10 C 0.071 3.929 11 H 0.073 0.927 12 C -0.186 4.186 13 C -0.153 4.153 14 C -0.121 4.121 15 H 0.122 0.878 16 C -0.031 4.031 17 N -0.344 5.344 18 C 0.384 3.616 19 O -0.404 6.404 20 C -0.228 4.228 21 C -0.042 4.042 22 O -0.051 6.051 23 C -0.160 4.160 24 C 0.313 3.687 25 F -0.172 7.172 26 F -0.164 7.164 27 C -0.123 4.123 28 C -0.003 4.003 29 C -0.125 4.125 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.223 0.777 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.245 0.755 40 H 0.157 0.843 41 H 0.187 0.813 42 H 0.104 0.896 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.413 -23.992 -2.606 24.533 hybrid contribution 0.218 1.106 0.092 1.131 sum -4.194 -22.886 -2.514 23.403 Atomic orbital electron populations 1.69659 1.05076 1.25810 1.57221 1.24762 0.95486 0.97721 1.02829 0.86212 0.78639 0.83965 0.77468 1.21762 1.21795 1.20788 1.19228 0.90992 0.84100 1.43158 0.91147 1.42719 1.05938 0.99667 1.88521 1.20652 0.93985 0.85603 0.92622 0.92731 1.22945 0.98965 0.95842 1.00867 1.22324 1.00822 0.97359 0.94793 1.23071 0.95193 0.96334 0.97464 0.87833 1.22368 0.88698 0.92535 0.99465 1.48410 1.06062 1.11242 1.68688 1.16754 0.80770 0.86374 0.77746 1.90852 1.54183 1.47575 1.47798 1.21565 0.94119 0.94884 1.12265 1.25543 0.96547 0.83552 0.98606 1.83750 1.16133 1.36593 1.68647 1.22583 0.85523 0.95312 1.12544 1.19526 0.82124 0.74952 0.92135 1.93051 1.90679 1.40071 1.93438 1.93078 1.65104 1.88732 1.69464 1.22593 0.97373 0.92572 0.99797 1.22381 0.91848 0.82795 1.03285 1.23377 0.94640 0.95139 0.99366 0.89028 0.93384 0.77716 0.90696 0.92916 0.92195 0.91757 0.91443 0.91112 0.75543 0.84274 0.81268 0.89624 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.29 4.78 -52.67 -0.25 -17.54 16 10 C 0.18 3.30 3.22 -67.15 -0.22 3.08 16 11 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 12 C -0.15 -2.31 6.52 -25.81 -0.17 -2.48 16 13 C -0.12 -1.40 5.58 -25.40 -0.14 -1.54 16 14 C -0.10 -1.10 4.16 -87.52 -0.36 -1.46 16 15 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 16 C 0.09 0.91 4.28 -3.15 -0.01 0.90 16 17 N -0.61 -8.77 3.32 -171.91 -0.57 -9.34 16 18 C 0.59 9.55 7.85 -12.54 -0.10 9.45 16 19 O -0.53 -10.81 17.23 5.26 0.09 -10.72 16 20 C -0.22 -2.80 6.28 -103.28 -0.65 -3.45 16 21 C 0.03 0.25 10.64 30.07 0.32 0.57 16 22 O -0.16 -1.50 10.50 7.65 0.08 -1.42 16 23 C -0.11 -1.05 6.90 -35.74 -0.25 -1.30 16 24 C 0.37 2.59 5.82 36.01 0.21 2.80 16 25 F -0.19 -1.67 17.30 2.25 0.04 -1.63 16 26 F -0.18 -1.58 17.01 2.25 0.04 -1.55 16 27 C -0.10 -1.18 10.54 -37.46 -0.39 -1.57 16 28 C 0.12 2.03 4.38 -2.53 -0.01 2.02 16 29 C -0.11 -1.57 4.13 -87.45 -0.36 -1.93 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.39 9.86 5.29 -40.82 -0.22 9.65 16 33 H 0.07 1.41 7.91 -51.93 -0.41 1.00 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.86 7.31 -51.93 -0.38 0.48 16 37 H 0.07 0.51 6.81 -51.93 -0.35 0.15 16 38 H 0.07 0.56 6.81 -51.93 -0.35 0.21 16 39 H 0.23 1.34 4.46 -52.49 -0.23 1.11 16 40 H 0.14 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.09 1.67 6.27 -51.93 -0.33 1.34 16 43 H 0.08 1.69 7.97 -51.93 -0.41 1.28 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -34.08 355.65 -7.08 -41.17 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.19 Total: 7.84 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.38 Total: -2.04 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.10 Total: -54.18 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.17 Total: -12.14 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.08 -7.08 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026341056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.606 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds