Wall clock time and date at job start Sat Apr 11 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99989 * 2 1 4 4 H 1.48503 * 109.47020 * 269.99481 * 3 2 1 5 5 H 1.48497 * 109.47482 * 29.99821 * 3 2 1 6 6 H 1.48503 * 109.47075 * 149.99586 * 3 2 1 7 7 C 1.38813 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00137 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.03751 * 33.84423 * 10 9 7 12 12 C 1.53702 * 109.90244 * 272.68099 * 10 9 7 13 13 C 1.54063 * 106.68299 * 241.81976 * 12 10 9 14 14 C 1.54488 * 104.83914 * 336.66869 * 13 12 10 15 15 H 1.09004 * 114.04878 * 272.29276 * 14 13 12 16 16 C 1.54116 * 108.73097 * 144.68419 * 14 13 12 17 17 N 1.47066 * 107.52749 * 272.43928 * 16 14 13 18 18 C 1.34773 * 125.70570 * 181.97031 * 17 16 14 19 19 O 1.21617 * 120.00161 * 180.02562 * 18 17 16 20 20 C 1.47382 * 120.00540 * 0.02622 * 18 17 16 21 21 C 1.36414 * 127.18449 * 359.96975 * 20 18 17 22 22 O 1.33654 * 108.39314 * 180.02562 * 21 20 18 23 23 C 1.34214 * 110.90894 * 0.02562 * 22 21 20 24 24 C 1.50706 * 125.43537 * 179.97438 * 23 22 21 25 25 F 1.39894 * 109.47035 * 30.02927 * 24 23 22 26 26 F 1.39897 * 109.46606 * 150.02741 * 24 23 22 27 27 C 1.34171 * 109.12464 * 0.22801 * 23 22 21 28 28 C 1.47393 * 108.58404 * 2.23615 * 17 16 14 29 29 C 1.53795 * 109.90399 * 155.00474 * 10 9 7 30 30 H 1.09001 * 113.27691 * 264.65187 * 29 10 9 31 31 H 0.96994 * 119.99670 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00148 * 0.02562 * 9 7 2 33 33 H 1.09001 * 110.02142 * 1.12625 * 12 10 9 34 34 H 1.08999 * 110.01498 * 122.46799 * 12 10 9 35 35 H 1.09004 * 110.36658 * 217.82448 * 13 12 10 36 36 H 1.09004 * 110.36705 * 95.51221 * 13 12 10 37 37 H 1.08996 * 109.83701 * 152.94200 * 16 14 13 38 38 H 1.09006 * 109.92236 * 31.98341 * 16 14 13 39 39 H 1.08002 * 125.80762 * 0.02562 * 21 20 18 40 40 H 1.08997 * 109.46819 * 270.02201 * 24 23 22 41 41 H 1.08002 * 127.02521 * 179.73072 * 27 23 22 42 42 H 1.08990 * 110.32809 * 93.72145 * 28 17 16 43 43 H 1.09004 * 110.32445 * 215.94811 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9813 -3.5550 0.5708 12 6 2.3782 -4.0761 -1.4431 13 6 1.6631 -5.4196 -1.6824 14 6 1.4700 -6.0216 -0.2728 15 1 2.3132 -6.6186 0.0746 16 6 0.1283 -6.7791 -0.2377 17 7 -0.9174 -5.8113 0.1263 18 6 -2.2242 -6.0927 0.2980 19 8 -3.0023 -5.2079 0.5997 20 6 -2.7106 -7.4725 0.1203 21 6 -1.9730 -8.5699 -0.2152 22 8 -2.7906 -9.6255 -0.2748 23 6 -4.0532 -9.2701 0.0097 24 6 -5.2380 -10.2010 0.0364 25 9 -4.8152 -11.4836 0.4013 26 9 -6.1749 -9.7367 0.9658 27 6 -4.0930 -7.9528 0.2612 28 6 -0.2983 -4.4810 0.2657 29 6 1.1848 -4.7656 0.6116 30 1 1.3739 -4.9271 1.6728 31 1 -0.4849 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 2.0061 -3.3259 -2.1409 34 1 3.4543 -4.1984 -1.5661 35 1 2.2829 -6.0757 -2.2935 36 1 0.6973 -5.2553 -2.1603 37 1 0.1719 -7.5742 0.5066 38 1 -0.0849 -7.2026 -1.2192 39 1 -0.9092 -8.5835 -0.4011 40 1 -5.6945 -10.2365 -0.9528 41 1 -4.9626 -7.3654 0.5165 42 1 -0.3719 -3.9291 -0.6713 43 1 -0.7749 -3.9242 1.0726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026341056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:04 Heat of formation + Delta-G solvation = -109.958516 kcal Electronic energy + Delta-G solvation = -29577.279363 eV Core-core repulsion = 25066.795241 eV Total energy + Delta-G solvation = -4510.484122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -50.14503 -48.18119 -43.81619 -41.66192 -39.65491 -36.74267 -35.04272 -34.17472 -32.74881 -32.56372 -30.39105 -29.95418 -27.48518 -26.62633 -25.85915 -25.12085 -23.35032 -22.23389 -21.09867 -20.80636 -20.32864 -19.36524 -18.88689 -18.75231 -18.21867 -17.81864 -17.39747 -17.06778 -16.85292 -16.72087 -16.26198 -16.01649 -15.67476 -15.12484 -15.02564 -14.61418 -14.52980 -14.43209 -14.32315 -14.09378 -13.98270 -13.88015 -13.57593 -13.44797 -13.26761 -13.02266 -12.62644 -12.54838 -12.38132 -12.17754 -11.78581 -11.65251 -11.57308 -11.46790 -11.35816 -11.11292 -11.09683 -10.92003 -10.07075 -9.76715 -8.98875 -7.93860 -5.22513 0.12808 0.58112 1.29491 1.45149 1.47040 1.55426 1.76534 2.13501 2.55600 2.71811 3.05992 3.23891 3.34285 3.39664 3.52931 3.56740 3.77510 3.79273 3.86911 4.01554 4.19165 4.23410 4.29935 4.32959 4.34144 4.40690 4.57662 4.64930 4.68274 4.72148 4.77382 4.88167 4.92475 5.06527 5.13596 5.20458 5.28858 5.33978 5.50185 5.55634 5.64275 5.68020 6.28549 6.41197 6.99598 7.33629 8.13087 8.32128 9.29776 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002411 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.730462 B =11609.918071 C =12636.133438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.083 4.083 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.170 3.830 11 H 0.055 0.945 12 C -0.140 4.140 13 C -0.108 4.108 14 C -0.078 4.078 15 H 0.150 0.850 16 C 0.081 3.919 17 N -0.607 5.607 18 C 0.588 3.412 19 O -0.594 6.594 20 C -0.259 4.259 21 C 0.068 3.932 22 O -0.151 6.151 23 C -0.099 4.099 24 C 0.366 3.634 25 F -0.199 7.199 26 F -0.195 7.195 27 C -0.129 4.129 28 C 0.126 3.874 29 C -0.101 4.101 30 H 0.100 0.900 31 H 0.248 0.752 32 H 0.373 0.627 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.268 0.732 40 H 0.189 0.811 41 H 0.160 0.840 42 H 0.053 0.947 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 -28.617 -3.686 28.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.274 4.274 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.384 5.384 10 C 0.061 3.939 11 H 0.073 0.927 12 C -0.180 4.180 13 C -0.146 4.146 14 C -0.097 4.097 15 H 0.168 0.832 16 C -0.039 4.039 17 N -0.339 5.339 18 C 0.380 3.620 19 O -0.476 6.476 20 C -0.264 4.264 21 C -0.003 4.003 22 O -0.045 6.045 23 C -0.148 4.148 24 C 0.313 3.687 25 F -0.180 7.180 26 F -0.176 7.176 27 C -0.149 4.149 28 C 0.003 3.997 29 C -0.121 4.121 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.207 0.793 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.283 0.717 40 H 0.205 0.795 41 H 0.178 0.822 42 H 0.071 0.929 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.816 -28.375 -3.542 28.653 hybrid contribution -0.507 2.373 0.371 2.455 sum -2.323 -26.002 -3.170 26.297 Atomic orbital electron populations 1.69850 1.06817 1.25847 1.60084 1.25590 0.96248 1.01267 1.04317 0.85156 0.77755 0.79659 0.77318 1.21562 1.22802 1.19043 1.19681 0.91532 0.85282 1.40092 0.90221 1.42996 1.05637 1.01180 1.88578 1.21016 0.93958 0.84341 0.94582 0.92707 1.22744 1.00500 0.97099 0.97676 1.22303 1.00173 0.95735 0.96374 1.23158 0.97284 0.94365 0.94863 0.83212 1.22822 0.86395 0.92169 1.02556 1.48440 1.06591 1.10973 1.67915 1.17345 0.80699 0.87386 0.76615 1.90808 1.55961 1.49803 1.51007 1.21285 0.95356 0.93762 1.15983 1.26090 0.97446 0.81875 0.94856 1.83805 1.16152 1.36422 1.68140 1.22917 0.86100 0.94893 1.10902 1.20081 0.81126 0.73758 0.93735 1.93035 1.90792 1.40510 1.93674 1.93057 1.65380 1.88865 1.70274 1.22629 0.97183 0.93693 1.01371 1.21975 0.93707 0.84067 0.99907 1.23291 0.91748 0.96488 1.00604 0.88206 0.94317 0.79307 0.94719 0.90900 0.88211 0.93455 0.87357 0.87829 0.71698 0.79462 0.82223 0.92850 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.21 13.06 21.65 0.28 -61.93 16 2 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 3 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.23 -12.94 9.96 84.03 0.84 -12.10 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -37.04 4.78 -320.56 -1.53 -38.57 16 10 C 0.17 6.11 3.22 45.50 0.15 6.25 16 11 H 0.05 1.96 8.09 -2.39 -0.02 1.94 16 12 C -0.14 -4.25 6.52 31.19 0.20 -4.05 16 13 C -0.11 -2.24 5.58 31.46 0.18 -2.06 16 14 C -0.08 -1.32 4.16 -8.79 -0.04 -1.35 16 15 H 0.15 1.36 8.14 -2.38 -0.02 1.34 16 16 C 0.08 1.21 4.28 86.65 0.37 1.59 16 17 N -0.61 -17.19 3.32 -816.05 -2.71 -19.91 16 18 C 0.59 19.49 7.85 86.65 0.68 20.17 16 19 O -0.59 -26.60 17.23 -4.08 -0.07 -26.67 16 20 C -0.26 -6.20 6.28 -18.99 -0.12 -6.32 16 21 C 0.07 0.97 10.64 67.39 0.72 1.68 16 22 O -0.15 -2.31 10.50 4.46 0.05 -2.26 16 23 C -0.10 -1.66 6.90 24.76 0.17 -1.49 16 24 C 0.37 4.23 5.82 71.24 0.41 4.64 16 25 F -0.20 -2.93 17.30 44.97 0.78 -2.15 16 26 F -0.19 -3.14 17.01 44.97 0.77 -2.37 16 27 C -0.13 -2.90 10.54 23.65 0.25 -2.65 16 28 C 0.13 4.60 4.38 86.87 0.38 4.98 16 29 C -0.10 -2.91 4.13 -8.74 -0.04 -2.95 16 30 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.37 20.55 5.29 -92.71 -0.49 20.06 16 33 H 0.03 1.32 7.91 -2.39 -0.02 1.31 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.05 1.16 7.31 -2.38 -0.02 1.14 16 37 H 0.11 0.86 6.81 -2.39 -0.02 0.85 16 38 H 0.10 0.99 6.81 -2.38 -0.02 0.97 16 39 H 0.27 1.34 4.46 -2.91 -0.01 1.32 16 40 H 0.19 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.05 2.27 6.27 -2.39 -0.02 2.26 16 43 H 0.04 1.67 7.97 -2.38 -0.02 1.65 16 Total: -1.00 -84.30 355.65 4.79 -79.52 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.58 Total: 23.28 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 4.62 Total: 1.97 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -3.96 Total: -120.40 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.02 Total: -28.93 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 1.54 Total: -4.52 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -84.30 4.79 -79.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026341056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.442 kcal (2) G-P(sol) polarization free energy of solvation -84.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds