Wall clock time and date at job start Sat Apr 11 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.47133 * 36.18540 * 10 9 7 12 12 C 1.56004 * 110.52583 * 273.54424 * 10 9 7 13 13 C 1.56337 * 105.77216 * 248.33556 * 12 10 9 14 14 C 1.51562 * 101.81386 * 25.43779 * 13 12 10 15 15 H 1.09004 * 111.12438 * 71.47650 * 14 13 12 16 16 C 1.51522 * 123.33705 * 207.25964 * 14 13 12 17 17 N 1.49624 * 102.49648 * 151.62972 * 16 14 13 18 18 C 1.34776 * 126.07499 * 154.35374 * 17 16 14 19 19 O 1.21692 * 120.00190 * 180.02562 * 18 17 16 20 20 C 1.46663 * 119.99807 * 0.02562 * 18 17 16 21 21 C 1.36537 * 125.98810 * 179.71756 * 20 18 17 22 22 C 1.40366 * 106.70825 * 179.90632 * 21 20 18 23 23 C 1.35127 * 107.11389 * 0.34735 * 22 21 20 24 24 C 1.50703 * 125.61441 * 179.77954 * 23 22 21 25 25 F 1.39898 * 109.46884 * 299.97595 * 24 23 22 26 26 F 1.39892 * 109.47238 * 59.98224 * 24 23 22 27 27 O 1.33934 * 108.76917 * 359.78422 * 23 22 21 28 28 C 1.49289 * 107.85269 * 334.35121 * 17 16 14 29 29 C 1.49701 * 110.52422 * 158.98215 * 10 9 7 30 30 H 1.08999 * 108.54627 * 196.59283 * 29 10 9 31 31 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 33 33 H 1.09002 * 110.19232 * 7.40880 * 12 10 9 34 34 H 1.09002 * 110.18952 * 129.18449 * 12 10 9 35 35 H 1.09006 * 110.96096 * 143.56526 * 13 12 10 36 36 H 1.08997 * 110.95970 * 267.30596 * 13 12 10 37 37 H 1.08998 * 110.80399 * 269.88000 * 16 14 13 38 38 H 1.08993 * 110.80536 * 33.37771 * 16 14 13 39 39 H 1.08006 * 126.64820 * 0.03494 * 21 20 18 40 40 H 1.07998 * 126.44063 * 180.15843 * 22 21 20 41 41 H 1.08997 * 109.46825 * 179.97438 * 24 23 22 42 42 H 1.08999 * 110.39332 * 112.41586 * 28 17 16 43 43 H 1.08999 * 110.39597 * 234.80985 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5891 -3.2129 -0.6032 12 6 4.3067 -2.9901 1.4582 13 6 5.8389 -2.8783 1.7480 14 6 6.2550 -1.7744 0.7964 15 1 5.8807 -0.8065 1.1299 16 6 7.6523 -1.6518 0.2234 17 7 7.4069 -0.9683 -1.0848 18 6 8.2893 -0.2045 -1.7590 19 8 7.9710 0.3012 -2.8191 20 6 9.6331 0.0172 -1.2149 21 6 10.6208 0.7606 -1.7946 22 6 11.7281 0.7017 -0.9340 23 6 11.3748 -0.0718 0.1162 24 6 12.2568 -0.4158 1.2887 25 9 13.3945 -1.0911 0.8341 26 9 12.6421 0.7592 1.9430 27 8 10.1117 -0.4824 -0.0566 28 6 6.0111 -1.2828 -1.5107 29 6 5.5081 -2.2710 -0.5023 30 1 5.9228 -3.2429 -0.7697 31 1 -0.4849 0.8401 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 3.7455 -2.3694 2.1566 34 1 3.9831 -4.0282 1.5342 35 1 6.0198 -2.5892 2.7834 36 1 6.3499 -3.8112 1.5103 37 1 8.2827 -1.0392 0.8679 38 1 8.0952 -2.6357 0.0690 39 1 10.5609 1.2928 -2.7325 40 1 12.6838 1.1816 -1.0845 41 1 11.7079 -1.0539 1.9813 42 1 5.3940 -0.3847 -1.4831 43 1 6.0076 -1.7164 -2.5108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026409047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:39 Heat of formation + Delta-G solvation = -75.997198 kcal Electronic energy + Delta-G solvation = -29904.295797 eV Core-core repulsion = 25395.284348 eV Total energy + Delta-G solvation = -4509.011449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.65158 -47.65464 -43.24275 -40.66057 -38.77999 -35.57547 -33.76063 -33.40595 -31.77354 -31.19310 -29.85558 -28.91076 -26.98238 -25.78410 -23.88839 -22.94859 -22.34753 -21.82913 -20.34176 -20.09074 -19.08759 -18.45833 -18.03138 -17.91279 -17.79530 -17.31692 -16.74468 -16.36718 -15.45379 -15.13941 -14.68459 -14.51295 -14.39896 -14.28349 -14.00169 -13.99032 -13.89727 -13.69782 -13.55671 -13.47560 -12.89153 -12.69610 -12.59671 -12.13826 -11.90591 -11.87424 -11.49906 -11.21757 -11.02822 -10.84097 -10.58708 -10.53585 -10.45010 -10.33194 -10.18571 -9.84785 -9.60774 -9.35626 -8.98051 -8.82059 -7.33150 -5.81555 -3.17737 0.45904 1.70441 1.72992 2.56187 2.89150 3.29987 3.34309 3.37380 3.43631 3.52784 3.91917 4.01464 4.30956 4.31530 4.36400 4.54895 4.74110 4.84923 5.04946 5.07300 5.08447 5.23679 5.28153 5.36083 5.38129 5.46967 5.51143 5.59575 5.74296 5.75390 5.77630 5.90103 5.98305 6.03798 6.15744 6.21134 6.29063 6.33794 6.40731 6.63157 6.88480 7.18942 7.76661 7.94347 8.37648 9.15082 9.87721 10.06432 11.36665 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.002938 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.808329 B = 9527.789510 C =10068.971727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.205 3.795 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.098 4.098 14 C -0.126 4.126 15 H 0.090 0.910 16 C 0.115 3.885 17 N -0.613 5.613 18 C 0.611 3.389 19 O -0.514 6.514 20 C -0.032 4.032 21 C -0.130 4.130 22 C -0.156 4.156 23 C -0.088 4.088 24 C 0.361 3.639 25 F -0.183 7.183 26 F -0.183 7.183 27 O -0.142 6.142 28 C 0.130 3.870 29 C -0.124 4.124 30 H 0.075 0.925 31 H 0.260 0.740 32 H 0.361 0.639 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.310 -4.528 3.131 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.110 0.890 9 N -0.386 5.386 10 C 0.094 3.906 11 H 0.083 0.917 12 C -0.185 4.185 13 C -0.137 4.137 14 C -0.146 4.146 15 H 0.109 0.891 16 C -0.006 4.006 17 N -0.346 5.346 18 C 0.398 3.602 19 O -0.391 6.391 20 C -0.086 4.086 21 C -0.150 4.150 22 C -0.175 4.175 23 C -0.140 4.140 24 C 0.307 3.693 25 F -0.164 7.164 26 F -0.164 7.164 27 O -0.038 6.038 28 C 0.010 3.990 29 C -0.144 4.144 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.194 0.806 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.187 0.813 40 H 0.181 0.819 41 H 0.152 0.848 42 H 0.099 0.901 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 25.781 -4.455 2.699 26.302 hybrid contribution 0.835 1.483 -0.060 1.703 sum 26.616 -2.972 2.638 26.911 Atomic orbital electron populations 1.69691 1.05090 1.25863 1.57289 1.24655 0.95172 0.97086 1.01911 0.86643 0.79324 0.85309 0.77755 1.21110 1.21614 1.20390 1.19063 0.80488 0.94707 1.43222 0.89022 1.42802 1.04030 1.01785 1.89986 1.19984 0.87788 0.89674 0.93156 0.91690 1.23809 0.93666 1.01062 0.99933 1.21843 0.97330 0.96493 0.97986 1.22649 0.93781 1.01168 0.96965 0.89146 1.21943 0.97598 0.97576 0.83491 1.49746 1.14091 1.48191 1.22556 1.16111 0.80930 0.79316 0.83857 1.90928 1.76475 1.50292 1.21446 1.22369 0.96342 1.02896 0.86944 1.22021 0.91133 1.00191 1.01680 1.21708 1.01138 1.00910 0.93740 1.22889 0.85795 1.04673 1.00689 1.19080 0.81126 0.81127 0.87984 1.93079 1.53173 1.79677 1.90481 1.93083 1.91984 1.50298 1.80992 1.84094 1.24437 1.58736 1.36496 1.21068 0.79879 1.00100 0.97939 1.22113 0.99118 0.98750 0.94409 0.90674 0.93002 0.80588 0.90273 0.92251 0.91803 0.91667 0.89916 0.90496 0.81318 0.81875 0.84793 0.90120 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.97 55.49 0.78 -27.98 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.95 27.73 -169.99 -4.71 17.24 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 7 C -0.25 -6.58 10.46 -15.06 -0.16 -6.74 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 N -0.74 -16.33 4.74 -53.45 -0.25 -16.58 16 10 C 0.20 3.50 3.45 -67.96 -0.23 3.26 16 11 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 12 C -0.14 -2.13 6.74 -23.33 -0.16 -2.28 16 13 C -0.10 -1.11 6.62 -25.67 -0.17 -1.28 16 14 C -0.13 -1.58 3.06 -89.45 -0.27 -1.86 16 15 H 0.09 1.33 7.97 -51.93 -0.41 0.92 16 16 C 0.12 1.27 6.00 -3.05 -0.02 1.25 16 17 N -0.61 -8.50 3.43 -173.02 -0.59 -9.09 16 18 C 0.61 9.07 7.85 -12.86 -0.10 8.97 16 19 O -0.51 -9.19 17.23 5.20 0.09 -9.10 16 20 C -0.03 -0.40 6.95 -36.80 -0.26 -0.65 16 21 C -0.13 -1.37 10.62 -39.40 -0.42 -1.79 16 22 C -0.16 -1.38 10.77 -39.89 -0.43 -1.81 16 23 C -0.09 -0.77 6.75 -35.41 -0.24 -1.01 16 24 C 0.36 2.32 5.76 36.01 0.21 2.52 16 25 F -0.18 -1.38 17.32 2.25 0.04 -1.34 16 26 F -0.18 -1.44 17.32 2.25 0.04 -1.40 16 27 O -0.14 -1.46 7.89 4.98 0.04 -1.42 16 28 C 0.13 1.99 6.69 -4.04 -0.03 1.96 16 29 C -0.12 -1.74 2.26 -91.15 -0.21 -1.95 16 30 H 0.07 0.91 7.99 -51.93 -0.42 0.50 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.36 7.99 4.58 -40.82 -0.19 7.80 16 33 H 0.08 1.37 7.98 -51.93 -0.41 0.96 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.83 6.26 -51.93 -0.33 0.51 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.45 7.16 -51.93 -0.37 1.08 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -32.43 361.23 -7.23 -39.66 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.52 Total: 5.86 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.58 Total: -1.29 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.07 Total: -53.66 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.13 Total: -10.52 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.08 Total: -2.74 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.43 -7.23 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026409047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.336 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds